Array 1 402719-404306 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLVB01000043.1 Pseudomonas aeruginosa strain WH-SGI-V-07312 WH_SGI_V_07312_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 402719 28 100.0 32 ............................ TACCTGCGCGGCCTGTCTACCCAGCGTATTGG 402779 28 100.0 32 ............................ AATAATTCAGAGTCCAGCCTAGCGCTGGGCTT 402839 28 100.0 32 ............................ TTCGTCAAGAACTACCCTGGCGCGTATCTAGA 402899 28 100.0 32 ............................ TCAACCGCGACGCCCTCTTTGTTGTACTGGTC 402959 28 100.0 32 ............................ TTGATATGGTTCTGCAAAAACGAGCGGATCGG 403019 28 100.0 32 ............................ ACGTCCATGCAGAACTCGAACGTCGTGTGCAT 403079 28 100.0 32 ............................ TGCGGCGGCCGCAGGCCGAATGCGAAGCCCGG 403139 28 100.0 32 ............................ GACCGGCGTTGTCCATTTTCAGGAATTCGGCC 403199 28 100.0 32 ............................ TGTCCGAAGCCGGCGGCGATTGCGTGGGCGTG 403259 28 100.0 32 ............................ GCGATCATCGAGTCATAGTGCGCGGCATCGCC 403319 28 100.0 32 ............................ AAAAACATCGGTCGGCACAGTCAATGGCACGC 403379 28 100.0 32 ............................ TTAGTGGTTGGCATGGCGAGTGATGCCACGTA 403439 28 100.0 32 ............................ ATCAGGACGTGCCAGATGATTCCGCCAGTGGA 403499 28 100.0 32 ............................ CTGCCCTATGACCCCCTGGCGAAGGGCGGGAT 403559 28 100.0 32 ............................ CAGGGCAAGCGGCACCGTGTCGCCGTCGGCGA 403619 28 100.0 32 ............................ AAATGCGGTAGGTATTGCCGGCGACGTTGTGT 403679 28 100.0 32 ............................ TCCAGGCTCTGCCGGGCCGCAGTCTCAAATGC 403739 28 100.0 32 ............................ TGCACAGAGAAACAGGCCAAGCGCCTGCGCCG 403799 28 100.0 32 ............................ TGATGCCCGACATGGGCCGCTTCGCGGGAACC 403859 28 100.0 32 ............................ CTCGCGGGCGCTTTCGCAATCTCTCGCGCCGC 403919 28 100.0 32 ............................ AGCGGGTCAGTTCGACGAAGCCCCTCCGACGC 403979 28 100.0 32 ............................ ACATTCCGCCTTCGTCGCGGGGTCGCACTTCC 404039 28 100.0 32 ............................ CGACTGTCCCGGTAGAGATCCGTCATCTTCGC 404099 28 100.0 32 ............................ TGCGGGGACTGCTCTGGTGTTCCAGTCAGCGA 404159 28 100.0 32 ............................ ATATGCTCATCGGTGACGCCGGCGGCGCGCCC 404219 28 92.9 32 .....................A..A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 404279 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 27 28 98.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATGGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGGTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGGTCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGCCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGGTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTCTCGGCCGGGGCCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAACCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGGTCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGATTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCTTCCGCC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 413454-412825 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLVB01000043.1 Pseudomonas aeruginosa strain WH-SGI-V-07312 WH_SGI_V_07312_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 413453 28 100.0 32 ............................ CAGGTGTCAGCCAGCGTCAAGCAGCGGAACTA 413393 28 100.0 32 ............................ GCGCCAAGCGCCAACTGCGCAAATGCTGAAAA 413333 28 100.0 32 ............................ TCGCTCAATCGCCGTCGCCGGGTCAACTGACG 413273 28 100.0 32 ............................ CGGCAGAAAAACGGATCGGTCGCGACTTCGAA 413213 28 100.0 32 ............................ TATGATCATGCCCCGTCCTCTGGCTCAAACAC 413153 28 100.0 32 ............................ TGCTCGATGAGGTAAGCAGCAAGCCGGCCCAT 413093 28 100.0 32 ............................ AGCTCACGCAGGAGCGACCAATACCGCTTGTT 413033 28 100.0 32 ............................ ACTTGCAGCGCCGCCGCGTCGTCTTGCATGCG 412973 28 100.0 33 ............................ TACCCGGACATTAGACGAAAACTGCGTTCCGGT 412912 28 100.0 32 ............................ ATGAACACTGAACTTGCACCCGTTGAAATCTA 412852 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 11 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCGCGCACTTGTTCGACAACGCGAAAGGGCGCTTGAGGTCGGCAATCAATGTCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTCTCGCCCTCGAACGGCGCGGTTGACCGACGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTAGGAGGCCTCGAAAAAAGAGGGTCTCTGGCAGGAAAGACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGTTTCACTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAGTTCCTACCCCACCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCCTGGAAGCTCACGCTCCTCATACAGACGCAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGTATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATCTCCCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGATGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [35.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 135932-136439 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLVB01000046.1 Pseudomonas aeruginosa strain WH-SGI-V-07312 WH_SGI_V_07312_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 135932 28 100.0 32 ............................ TGGCTGAGCGGAACCTATATCTCAAAGGTGAA 135992 28 100.0 32 ............................ ACAGCGGCTCGCCGTTGGCACCGAGTGCGGTC 136052 28 100.0 32 ............................ GTCCAACGCCTCGATGTCGGCGTCTACCAGAT 136112 28 100.0 32 ............................ GTCTGCACCGGGCACTCGCTCTGCCAGCCGTT 136172 28 100.0 32 ............................ AATCTGGTCGACACGCGGAACCACCGTCTGCA 136232 28 100.0 32 ............................ ACAGTCGGTCATCTTTCACGCGGCAAGTAATG 136292 28 100.0 32 ............................ TAATCCTGACAGGCCCGGTTCGCAGCCAGTAG 136352 28 100.0 32 ............................ AGCATCGAAGTCTGGCCGAACTTCCGCAATTC 136412 28 96.4 0 ...........................G | ========== ====== ====== ====== ============================ ================================ ================== 9 28 99.6 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCGTGCACTTGTTCGACAACGCGAAAGGGCGCTTGAGGTCGGCAATCAATGTCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCTCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGGTTGATCGCCGTCCCGGTCCTCGCGAAACGACCTCCAATTGCCTGAAACTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTAGGAGACCTCGAAAAAAGAGGGTCTCTGGCAGGAAAGACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : GTCGCGAGCGATATAGTCCCGTAGGGCGGATAACGCCACGGGCGTTATCCGCCGATGTCACGGAAAGCGGCGGATAACCGCAAGCGGTTATTCGCCCTACGGATCAGGACTTCGGAATGAACTCTTCTCTCAGGCTCATAGCGTCTCTCGTGGTCTCTCTCCGGCAACTCCGCACACCTGTCAGCCACGTCTCCGGTCCGTACAGACGCTTGCAAAAGGGACTGGCCTGGGAGAGCGAAACGAGAAGCCGAGGCAGGCAAGGAAATCAGCTTGCCCAGCACATTCAGACTCAAGACCACGAGGGCAGAAAACTGCCAGCCTCAGGCCGGCAACAACGGCCGACAGGCTTCGACGAAGCGCCGGCAGGCACCCGCACATTCGCGCTCCAGCGGCTCGTCGCCATCGCAACGCGATGCGCATGCCAGGGCATAGCGCGCCGCCAGCTCGCAGGCGGCCGGCGCCCATGGGCTGCGGCGCTCCAGCAGCAGGGCAGCGAGGCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //