Array 1 42663-43818 **** Predicted by CRISPRDetect 2.4 *** >NZ_LPVX01000006.1 Thalassospira sp. MCCC 1A02491 contig14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 42663 36 100.0 30 .................................... CCTCAAGCGAATACTGTGGTTGAGTTTGTA 42729 36 100.0 30 .................................... GTCACTCATCACGCTCTCCTATGTTGCGCT 42795 36 100.0 30 .................................... CGATGCTGTGGCGGGTGGTAGCGGTCTGGT 42861 36 100.0 30 .................................... GGAAGCAGATGTTTGGCGGGCGCTGAACAT 42927 36 100.0 29 .................................... GCGGCGTAATTGTTATTAAGAGAAATCAC 42992 36 100.0 30 .................................... TCGATAGTGCCGTTTGCGGACCTTATGTAA 43058 36 100.0 30 .................................... GCGCCCCGAGTTCACCGCGATGGCAGCGAT 43124 36 100.0 30 .................................... CCTGCTCAGTGATTGCGCGAGCATCCATAG 43190 36 100.0 30 .................................... AAGCGGATAAAGATCGATATGGATGCCAAG 43256 36 100.0 31 .................................... TCAAGCGTTAATTTGATGGCATTGATCGTCG 43323 36 100.0 30 .................................... TCCCGGATCCAATCCATGTAGGACATATCA 43389 36 100.0 30 .................................... AGAAAGACGCATTGATTGCGGAGCTGGTTG 43455 36 100.0 30 .................................... GCCCCCTCATTATGCCAAGCACACCAGCAC 43521 36 100.0 29 .................................... TCTCTCTCACAATGCGTTTTTCTCCGCTT 43586 36 100.0 29 .................................... CAAAAGAGAATACCCCACCAATGATCAAA 43651 36 100.0 30 .................................... CTCACCAAAGCCAAGGACCAAACCAATGAC 43717 36 100.0 30 .................................... GATGGCCTGTTCGCCGTGTTGGTGTGTTGA 43783 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 18 36 100.0 30 GTTGCGGTTGGACCACAATCTCTCTTCTGCTAAAAC # Left flank : TCTGGAACCCGGCCATCATAGGTGAAGGTTCAGGGCTACAAGTTGCCTTGGCATTGATGGGCGGTGTTGTCGCTGCAATTTCGCTGGCAGTTGCCATTGAAGGATATCTGAATGGCAAGCAGAACAGGATTGCGCGGTGTATGTTTGTGGGCATAGCGGTCGCGTGTGTGGCGCCATTTATATATATCGCAATCCCGGGTATCTTTTTTGGCTGTGTGTTGCTTGTTCGCAATTACAACACCTCATCAAACACATCCGACAAAGTAACAGAAAGTCAAAACATTCCTGGAGCCTGATATCGCTCTAGTGTGCGAAGAAGGTATGTGCCTTTGTGCCATACCTTCTTTTTTTTGAGGGTGGAGAAAATTGTCAGCTTTTCTGTCACTTCTGGAGATTTTTGTCAGCTTTTGTGACAATTGATGACAACTTATCTGGCAAACGAAAACGCTAAGGAATTGATTTCGAGGGCAGTCGAATGTCACCTTTTGTGGCACATGACA # Right flank : GCTGTTTCTGAATTGGCATCCGTCGAAACAGTTGCGGTTGGACCACAATCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGTTGGACCACAATCTCTCTTCTGCTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: F [matched GTTGCGGTTGGACCACAATTCTTCTTCTGCTAAAAT with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.70,-0.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [55.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 52-680 **** Predicted by CRISPRDetect 2.4 *** >NZ_LPVX01000032.1 Thalassospira sp. MCCC 1A02491 contig8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 52 36 100.0 30 .................................... GTGATCGGAGCGCACAAGTTCTATGCGATA 118 36 100.0 30 .................................... ATGAGCTGGTTGTAACGCTCTAACGATAAA 184 36 100.0 30 .................................... GCACCCCGCCGTGAACATGCGTCTTAAGGC 250 36 100.0 30 .................................... ATCGCGGAATATCAGCCGATACGGACTCAA 316 36 100.0 30 .................................... TGGCGAGTGTTGCTGACGCCTGCTCCTGCT 382 36 100.0 29 .................................... TTTCAGACAACCAAAACCACAGTCATTAC 447 36 100.0 30 .................................... CCAAGCATTTCCGCTCCACTCATCGTAAGA 513 36 100.0 30 .................................... TTCTGCGAGAGCCATGAGAACAGGTCTTTC 579 36 100.0 30 .................................... TCGCGCAGAGGATTTTCTTTCGGTTTAGAA 645 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 10 36 100.0 30 GTTGCGGTTGGACCACAATCTCTCTTCTGCTAAAAC # Left flank : CAATCTCTCTTCTGCTAAAACGCTGTTTCTGAATTGGCATCCGTCGAAACAG # Right flank : CCACCTTCGGAAAAGCTCCTGATTTCAGGGGCTTTTTTGACGTTCTGGCGGGTTCACAATCCTCTTATTCGTCGTTCAGAACATTTCAAACTGGCTGGGATTTTTGCGCGAATCCTGTTTTGTTCTACCTGTATATGAAACGATGTTCTCATATTGCTTGTCAGTGAAATACAGAATATCGACCTTGCCGCCAGCGGGCAGTTTCATATGGACTTTGCGCGTCATGCTTTCTGCCTGTTCCTTACCGGCACAGAAACGAAGGTAAACGGAAAACTGGGCCATTTCGAAACCGAGGTCGAGGAGGTGGTTGCGAAAACCAGTTGCGGCCTTGCGTTCCTTTTTGGTTGTGACCGGCAAATCGAAAAGCACCATCATCCACATCATTCGGTATCCCGATAACATGTCGCTATCCCAGTTCAAGTGGAAGTGGGGCCAGCGGCAGGGCAAGGCTTTGGGCTTCACCAAGATAGCATTGCGCCAGCGACCCGGCGAGGCGATGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGTTGGACCACAATCTCTCTTCTGCTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: F [matched GTTGCGGTTGGACCACAATTCTTCTTCTGCTAAAAT with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.70,-0.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //