Array 1 2428-75 **** Predicted by CRISPRDetect 2.4 *** >NZ_SIRP01000017.1 Isoptericola sp. BMS4 Scaffold_17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2427 29 100.0 32 ............................. GTGGCCGTCAGGACCCCGTCAGGGCTCGTCGC 2366 29 100.0 32 ............................. ACGGACGGCGTGATCAAGGCGCCGTCCGACAC 2305 29 100.0 32 ............................. GTCGAGTAGCGCGAGATGTGGAACGGCGGGGC 2244 29 96.6 32 ............................G TCCTTGTTGTAGACCTCAAGCTCCAGGGGCGC 2183 29 96.6 32 ............................G ACCTCGGCGCGGCGCTGTACGCGATGGACCTG 2122 29 96.6 33 ............................G GAGACGGCGCTGGCCGCTATTGCGGCGGGTCGT 2060 29 100.0 32 ............................. GCGTCGGAGTCCACTACCAGGCCCGTCGGGGC 1999 29 100.0 32 ............................. GCCCACGCGCCCCTGTGGCGCATCATCGACGC 1938 29 100.0 32 ............................. CAGCGAGTCCGGGCCTCCCCGCAAGAGCGACC 1877 29 96.6 32 ............................G CAGAGACGGCCGTGCTCCGGACAGCCGGCTAC 1816 29 100.0 33 ............................. CGCGGGACCCGCCGCGGCAGCGCGCCCATCAGG 1754 29 100.0 32 ............................. CGCACGGCACCGCGCGCTTCCGTTGCCAGCGG 1693 29 100.0 32 ............................. ATTTCATCGACGACGCCGTACGCCCCGGAGAG 1632 29 100.0 32 ............................. CGTGTCGCGGTCGTCGGCTCGACGCCGGACGG 1571 29 100.0 32 ............................. GACGAGGACGCTGCGGAGGACGCGGAGGCCCC 1510 29 100.0 32 ............................. GTCAGCAGCCCCGGCTCCGAGTCGCTGCCGCC 1449 29 100.0 32 ............................. GCGACCGCCGTCAAGCTGTTCGGCACCCAGGC 1388 29 96.6 32 ............................G CAGCGGTGGAACGCAACCGCCGACGGCGGTAT 1327 29 100.0 32 ............................. CCTTCGTCGGTGCCGGCATCGTCCTCGGCACC 1266 29 96.6 33 ............................G CCGGAGCCGGTGCTCAACCCCGAGCAGTGGGCG 1204 29 100.0 33 ............................. GTCGGCGAGTACGTCGTCGTCCGGCCTGTCGAC 1142 29 100.0 32 ............................. GGGCCCTCGGTCTGCTCGACGATGACGCTCGC 1081 29 96.6 32 ............................G CCGAGAGCGATCCGCGTGCCCGCCGGGGGCTC 1020 29 96.6 32 ............................G GCCCCGACGACGCGGGGCCTGGGTGGTGCGTG 959 29 100.0 32 ............................. TGAACGAAGTGCCCCGCCCGGGGCAGGTCGCA 898 29 96.6 33 ............G................ TACCCCGTCGCGGCTGTCATCGCCGGGTATGAC 836 29 96.6 32 ............................G CGCAATGCCCGCCGCCTCCTGCTGGGCAGAGA 775 29 96.6 32 ............................G CAGCGGACCGATGAGCCCGCTCGAGGTGGTCG 714 29 96.6 32 ............................G CCGCTCTGCTGCGGCTCGATCGTCAGCTCGGT 653 29 96.6 32 ............................G GACGGCATCTCGTCAGTCCGCGACCGGTTCGC 592 29 100.0 32 ............................. GCCGGGTCCGTGTCGCCACGTGTGGCGGTGAG 531 29 96.6 32 ............................G TACTGCGGCGTGGTCATCACGATCAGCACCGT 470 29 100.0 32 ............................. TCGGCCGCGATCTTCTGCAACTCGGCGATCCG 409 29 100.0 32 ............................. GTGGAGGTCGCCACGTTAGTCGTGATCGCCTC 348 29 96.6 32 ............................G GCTGGGGGTCCCAGAGTGCCCGGACGGTTTGA 287 29 96.6 32 ............................T CTCCAACCACAGTGGCGTAGTCGTTGAGCACT 226 29 100.0 32 ............................. AGCCGCGGCGAGCCGGTACCGTCCTGGTCCGC 165 29 100.0 33 ............................. GCGGATGGCGCGAACGGAACCCCGACAGCAAGC 103 29 96.6 0 ............................G | ========== ====== ====== ====== ============================= ================================= ================== 39 29 98.5 32 GTGCTCCCCGCGCGAGCGGGGATGAGCCC # Left flank : CGAACTGAGCGCCTGACCTCACCAGGATCACCGAGCGCTACACCACTACCGGGGACTTGACCTCCGAACGTCGGCGACGAGTGAATGAATGGCGTTCCGGTTGTGGGTATCGTCAGAGGTCAGCAAG # Right flank : GTCGGCGCCGTTCTGGGTCAAGTCCCCGGTAGTGGTGTAGCGCTCGGTGATCCTGGTGAGGTCAGGCGCTCAGTT # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.89, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [35.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2706253-2704127 **** Predicted by CRISPRDetect 2.4 *** >NZ_SIRP01000001.1 Isoptericola sp. BMS4 Scaffold_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================== ================== 2706252 29 100.0 32 ............................. CTCACGAGCTTCGAGGTCCGCGGCTGGCGATG 2706191 29 100.0 32 ............................. CGCCCTGTTGAGCCGCGAGAAAGTGCTCGCCT 2706130 29 96.6 32 ............................G CCGCGCACACCGCCAGCCCCGAGTGCGCCCGC 2706069 29 96.6 32 ............................G GGCCCCGAGGATCACCCCGGGGCCCTTCGTCG 2706008 29 100.0 32 ............................. TGGTCGTTGATCGCCTGCTGCACCGTGGGCAG 2705947 29 100.0 32 ............................. CCCTCGTTCTCGTTCCAGAGCTTCACGACGAC 2705886 29 96.6 32 ............................G GACTGGTTCGACATGGCAACCGAGAAGGAGCT 2705825 29 100.0 32 ............................. ATTCGGGCTCCCAGCCCGGGAACGACGAAGGC 2705764 29 96.6 32 ...................T......... CGGTACGCCGACGACGTGCTCATGATCTACGA 2705703 29 96.6 32 ............................G CTCGGCAACATCAAGCGCCGCACCGTCACCGT 2705642 29 96.6 32 ............................G GCGACGTCGAAGACCTTCGGCACCCAAGAGGG 2705581 29 100.0 32 ............................. GCGGGCCGCAGGCCGTGGAGCTTGCCGGAGTC 2705520 29 96.6 32 ............................G ATGAGGCGGTAGTACTTGCTGGCCACCTGGTG 2705459 29 100.0 32 ............................. AACGCGGCCTCACGCCGGGCACCAACGACCCG 2705398 29 96.6 32 ...........A................. GGGGGACAGGAGGACAGGCCTCCCCGGTATGG 2705337 29 100.0 56 ............................. AGCGGCGGCGAGCACCGACCCTGGCGACCGCGCTACACCACTATCGGGGACTCAAC 2705252 28 89.7 32 T...................-.......G TCCGCCGGGTCCCGATGGGCTGGCAGCACCCG 2705192 29 96.6 32 ............................G CACCAGGAGTCAGCGGAGCAGATCGCCAAGCT 2705131 29 96.6 32 ............................G GCACCACCACCTCATGGCACAGATCACCCTCA 2705070 29 100.0 32 ............................. TCCTCGAACGAGGCGACGCACAACGCGATGGT 2705009 29 100.0 32 ............................. GCCCGCGAGCCCGTCGAGGACCGCGACGCGGG 2704948 29 96.6 32 ............................G GCGACGGGCGCGGCAACCGCAACCCAGCTCGG 2704887 29 100.0 32 ............................. CACCCTAGGAGGGCTCATGAGCACCAGGCTGG 2704826 29 93.1 32 ....................TG....... GACACGACGCTGGGCGACGACATCCGAGCCAT 2704765 29 96.6 33 ............................G CCGCGGAACCTCGACCCCGCCGTCGCCGGCGAG 2704703 29 100.0 32 ............................. CCGCACCCGCAGCCGAAGTCCTCGCAGCGGTA 2704642 29 100.0 32 ............................. TGCCACGACCCCCGGAGCGTCGCCAACCCGGA 2704581 29 100.0 32 ............................. TTCCAGACGACGATGACGTCGGCCTCGCCCGC 2704520 29 96.6 32 ............T................ CGCTTGCCGTCGACGACCGAGTACCGCGGCAC 2704459 29 96.6 32 .......T..................... GACGGGTTCGCCCGGACGATGGCGGCGCTGGC 2704398 29 100.0 32 ............................. GACCGCGCCGAGCGGGCCCTGGTCATCGTCTA 2704337 29 100.0 32 ............................. AACGCGGCCAACCAGAACAGCGCCGCCGACCG 2704276 29 89.7 32 ..............C......G......G TGCGTCGTGCGCGGGTTCGCGGAGGACGGTGA 2704215 28 93.1 32 ....................A-....... CGACCGGCCATGGTGCCGGCGTCGAGGGCGAT 2704155 29 79.3 0 ..C....T...........A......GGA | ========== ====== ====== ====== ============================= ======================================================== ================== 35 29 97.1 33 GTGCTCCCCGCGCGAGCGGGGATGAGCCC # Left flank : CCGACGAGGAGGGCGAGGACCGCTTCGACGCCGGGTGAGGGTGCGGGCGCAGGTCACACGGCCGGCGATTGGACCTCCGGGCCGTGGGTCCAGTAATGTTCCTCAGGCGCCGGGAGCGCAGGGGAGACCCGAATTCCTGGTCGTGCGGATGTGGCTCAGTTGGTAGAGCATCACCTTGCCAAGGTGAGGGTCGCGGGTTCGAGTCCCGTCATCCGCTCGGAGGCCCCACTCTCTGTTCGGCTCAACCACGAGCGTCCAGAGGGCACGTCTCAAGGTGGGTTGGCCGAGAGGCGAGGCAGCGGCCTGCAAAGCCGTATACACGGGTTCGAATCCCGTACCCACCTCGCAGCACGGGCGATTGGCGCAGCGGTAGCGCGCTTCCCTGACACGGAAGAGGTCACTGGTTCGATCCCACGCCGAAGATCTCGGCGACGACCCTGGCGACCGCGCTACACCACTATCGGGGACTCAACTCCGTTCTGGTCGCGCCGTCTGTCGGG # Right flank : TGAGCCCCACTGCCGCGAAGCGGCAACCCAGGATGAGCCCCCATGGGCAGTTGGCCTGTGTAGAACGGGAGGCCGGCGACCTGCCGTGCCGGCCGGATCATCCGGGGGCGTCGTCCCGCACGCTGGTCCCGGCGTCCTGGGCGGGGAGGGTCCGGTGCGGCCGCGGCGCGTCTCTGGGCGGGGCGTAGCGGAGCGGGGAGGCGACGACGAGCGCGCTCGCGAGGAGTGCGAGCACGGTCACGGCCGCGCACGCCCGGGTCACGACGGCGGTGGCCCTGGCGCGCAGCGTGCGCCGCGCGAGGGCGTGCAGCGCGAGGCCGACGACGCCGCCGGCGGTGTTGACGACCAGGTCGGTGACGTCGGACCGCCCGACGGCGAGGGCGTACTGGGCGGCCTCCAGGGCGAGGCTCGTCCCGGCGACCGCGCCCACCGCCTTCCACCACGGCCAGGACGGCGCGAGGAGGCCGAGGTAGAGGCCGAGCGGCACGAAGAGCACCAGG # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.83, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //