Array 1 3157-2694 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRQW01000104.1 Fischerella muscicola CCMEE 5323 NODE_139_length_16790_cov_36.527874, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 3156 37 100.0 32 ..................................... GGATACCCACCACGTATAAGCAGTTTTTTTAA 3087 37 100.0 33 ..................................... TAGGTGACTACAACTTTTACTGTTGAACAAGGA 3017 37 100.0 35 ..................................... CCTCCTTCTGCTGGAGTAGCCGCGATCGCGCTCCG 2945 37 100.0 34 ..................................... ACAAAGTTGATCCAATCAAACCCACTAGAAAATA 2874 37 100.0 35 ..................................... GCACCACTCCCACGATCATCAATTATCCTTCTGCA 2802 37 100.0 35 ..................................... TATCGCAAAAATTTCGTGCGGTCTTAATCCATATG 2730 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =================================== ================== 7 37 100.0 34 GTTGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Left flank : AGAAGATCCCAGTCAGCATCACTTTTTTAACCTCTGTTCCCGTAGTACCTCGGTAATCAAACAAGATTTTCCTTGTAAAATTAGGATGCTGGGTGTTGCTAGCTATAACTTCCTGACAGTTGCCACAGGAGCAGTATTAAGTGGTGTGGAAGCGACACCAAAAGTTTGGGATCTAGCCGCCGCTTGGGTAATAGTTAAAGCTGCGGGAGGAAGTTGGATCTCACTCAAATCAGAACCTTTTCCTTTGTCTGCTGGCGTTGATTATAGCGATCGCTCTTTCCCCACTTTGGTTGTCAGTCGTCCAGAATTGGTGTCTACATTTAAGCCATATTTGGAAAATTTAAAGATTTAAACTTTGGCACTCTCCAAGTTGCTCGATTGACTTTATGGTGCAGATGGGTAGGTGTAGAAATCAGTTAGCCCATAAAAAGTACCTTAATCCGTTTGACAGCAATAGTTTCATCGGTTAAGTAGCGAAAATAGGTCTGCACCAATAGCAA # Right flank : GTCATAATTTATTAGCCTTCCTACAGGCACTCTGTGTGGGTTGTTAAGTCCTCAGTGTTGCCGCTTCGGGGCGCGAAAATACTTGTTCGCGTATCCTTTCCTTATTGGAGTTAATGAAAAACTTAATATCGCAATATAAAACCACACTGTTGTAGCAATGTGGTGAGATTTACGTATAGCACTTTAAAGTTAGGAGATTTAATTCATAATCACCATCGAGTGGTGTTATTGTAAGCTACAAAGTCGAAGTTCAGCATTCCGGACGAAACACAAACATTTTTTGGACAACAACCTTAAGAAAAAATGATGTCGCAAAAAAATCCCTGGACTATAGTCTTAGTCGTGATCGTGTCAATTGCTGCCACCCAGATAGGTTTTCGTAACCTGATGTGGTTTTTGGATACTATTAATCTCATCCACACTCAGCCTTCTTCACATCAGAGATAACACTGAAATCACTACTTGCTATTGAAGAAGGCAGATGGCAGAAGGAACCATCA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 1 3617-7096 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRQW01000106.1 Fischerella muscicola CCMEE 5323 NODE_145_length_7042_cov_22.425732, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 3617 37 100.0 35 ..................................... ACCTCCAAAACCACCTGAAAATACTGCCCCTACAC 3689 37 100.0 37 ..................................... TTTATACTTAGGTTATCCTTTGGACTGCCCTGGGGAT 3763 37 100.0 41 ..................................... AACATGACCGCAAGCACTACAAGTCTGACTAGTATGGCGAG 3841 37 100.0 36 ..................................... GGAAATAGACATTTGTGCAGATATTAGAATCAAATA 3914 37 100.0 33 ..................................... ATTTGGCAAGCCTTTATGGGTTTGAGCAAGTTG 3984 37 100.0 36 ..................................... CAGCACGGTTTTATTGTTCCTCAAGAATTACAAGAA 4057 37 100.0 35 ..................................... GAATTAATTTTTGGGGGCGGATGCGATCGCATCTT 4129 37 100.0 38 ..................................... TTCGCTAAGGAAAGATTTATTAGGTCTGCCTTCCAGCC 4204 37 100.0 37 ..................................... GCGATCGCACCTAATTTCTTACGATTACGATCGCGCC 4278 37 100.0 34 ..................................... GGACTTGCAAGTAAAAATCAAATTGAGCTAAAGC 4349 37 100.0 37 ..................................... AAAGCGCAGAGTTTTTGCACCAGATAGGCGATCGCCA 4423 37 100.0 36 ..................................... CTCCAATAAAAATAGTAAAAAGTGTGGGTATTGTGA 4496 37 100.0 34 ..................................... TTGAGGATTATATATGCGCTACGCTTTAAGTTTA 4567 37 100.0 34 ..................................... AAGGTGTAGCAATTTCACCAGGAGGACTTGCATA 4638 37 100.0 35 ..................................... TTCGAAGACACGAGGCTAATCAGAACCAGGCACGG 4710 37 100.0 34 ..................................... GCGGAAGTATTATGCGCGGTGTAAAACTGTTGGA 4781 37 100.0 34 ..................................... CATCCAATATCGGAGACAAGCATTGCGAACAAAA 4852 37 100.0 32 ..................................... TGCGCTATCAACATTGACGCTCAAGCAGAACT 4921 37 100.0 34 ..................................... TTCCCCTCTAGGCATACGATTCTATGTTGCTATA 4992 37 100.0 34 ..................................... AGCATGTCGTTGATGCTTAACATATTAATTAATA 5063 37 100.0 36 ..................................... TATTACAATGATGCCTCTCCATACTTACCAGATATT 5136 37 100.0 34 ..................................... ATCGCTTTGGCCGTGTCTGGTTCGGATTAGCTTC 5207 37 100.0 34 ..................................... AGGTGAAGCAATCCCAGGTGCGGCGAATATTGCT 5278 37 100.0 35 ..................................... CTTGCATTTAAGAAATACTGAGGATTGCTGGAAGA 5350 37 100.0 35 ..................................... AAGGTATCAGATGTTACCTACACGTTAGAAGAATA 5422 37 100.0 33 ..................................... GGGCATGTAGGATTAACTTGGGAGGAGCTGATG 5492 37 100.0 33 ..................................... TTGTAGGATCTACAAATCTAGCTATTGAATCAG 5562 37 100.0 35 ..................................... CCTGTCTCCGCTAATATATTGTGCATTCATATTGC 5634 37 100.0 31 ..................................... AGAAACCGGCTAGCCTTTGCTGCGATATTGA 5702 37 100.0 35 ..................................... TTCCGCCAGGAGTACGAGGCCTCGTTTGAAGAACC 5774 37 100.0 34 ..................................... AGTGCAGTGGGGATCTTCCAGTAACGGCAATCCC 5845 37 100.0 32 ..................................... TACGAGCGGGCAATAAAAGCAAAAGCTTTGGA 5914 37 100.0 35 ..................................... TTTTTGAATCAAGCTGAAACCATAGATTGCAGCGG 5986 37 100.0 33 ..................................... AACGATAACAGAATGGGCTGCGAAACTAGGGAT 6056 37 100.0 35 ..................................... AAAAGCCTTGCAAATAAAGCTTTTTAGCATTTTTA 6128 37 100.0 34 ..................................... GGGATCTGCCTTGTCATCGATTGCTGTTGCGGAT 6199 37 100.0 37 ..................................... ATGTTTTGAAAGTTATTTTGAGCGGCTCTTTGAGCAA 6273 37 100.0 35 ..................................... AACTTACCTGAACCTGTCACCAGATCCCAGCAGAG 6345 37 100.0 34 ..................................... ACTACCCTGGGAGAAAAACCTGACATAGAATTTC 6416 37 100.0 34 ..................................... TGGGTACATCCTCCTGGCCAGATTTTGGATTTTC 6487 37 100.0 35 ..................................... CATATCTCTACTATATATATAGTAGAGAAGAATGT 6559 37 100.0 40 ..................................... TTTCTATTGCTTTTTCTATTGAAATAATAGAAGAAGGATT 6636 37 100.0 35 ..................................... TTGCTATGCTGCTTTCGACGGGGATATGCCTGTAG 6708 37 100.0 35 ..................................... AGAGTTTTACTCAAGCAATCAAAATTAGAGTTTGA 6780 37 100.0 34 ..................................... GATAGACTCTATTGCAGAGGTATATCCAGAAAGT 6851 37 100.0 33 ..................................... GATTGGAGAATCGTACCTGTACCCGCATCGGGA 6921 37 100.0 34 ..................................... CTTCTTCTTCGATTTGAGGCGCAAGCGATCGCAG 6992 37 100.0 34 ..................................... GTTTTAGATAAAATTTATTTTCTTCTTCTAGGAA 7063 34 91.9 0 ..................................--- | ========== ====== ====== ====== ===================================== ========================================= ================== 49 37 99.8 35 GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Left flank : CGCTGTGCAAACTCTTTTAGCAAACGGGACATTATAAATTTACTCCTCAATCAATGCACTTTCCTTATTTTCGGTTATTTCGGGAGCATCCCAATTTTTAAAAGTTAGCTGGCGAATATAATTCACTGCTACACAAACAAAGCTCCAAAGTTCTGATCCGAGGAAGCCTCCGCTCAGACTTCTCTGTGCCCACGCAGGCTACAATTAGTCTGCCTACAATAAGTAGCATCACCTGCAAAAAAATACAATTTGCGCAAATGAGTAGGTGTTTTTGTGAACATGTCAAAAATATGGGCTGAAACCATTACTCTGACTGCTTTTGAACCATATTGTAGCGATAGGGAGGTTTGCGGCATCGCCAAAAAGTTTGCTATGACTAAATTTGAAGGATTTTTGCTCAAACATCACTTGACATCCCAACGGCTGAAAAGCTATATTTCCTCTAGGTCTGCACCACTGAACCTTGAAAATCAAATACAGCAAGCCTTTCAAAACGAGCG # Right flank : | # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : NA // Array 1 4994-2066 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRQW01000716.1 Fischerella muscicola CCMEE 5323 NODE_1470_length_7749_cov_33.570526, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 4993 37 100.0 35 ..................................... CAATTGGAATACTTTGTACACGGATACTTATAACG 4921 37 100.0 35 ..................................... CTTAAACAATGGCTTGATGGTAAGGAAAACATGAC 4849 37 100.0 34 ..................................... GGCATCAATCAAATTGGCGCGACTGAAGTCGGCA 4778 37 100.0 35 ..................................... CCCAGCTGGTGCAAATTCACCTTCAAATCTACTAC 4706 37 100.0 35 ..................................... CTCTGCGAAGTTTCCAAAGCTGGGGCGCTAACTGA 4634 37 100.0 35 ..................................... CAGCCCTGATACAGTTACAGTCCCGGCTATCAGGA 4562 37 100.0 38 ..................................... CGGCGAACCCAAATAGTAATCCGTTTGAAAACTTATGA 4487 37 100.0 37 ..................................... CAAAATGTTAGACAAAGACCAAAACCAAGTCCAAGAT 4413 37 100.0 34 ..................................... TTTGCTCTTTGGGCTATGCGATCACGCTCTAATT 4342 37 100.0 40 ..................................... TCCGTTTGTTGCCTCGGATCCAGTATCCCAGATCCGGTTG 4265 37 100.0 34 ..................................... TGGGTGAATTCGGCGAACAAGGTGAGATACAACA 4194 37 100.0 34 ..................................... AAATTAACAGTAGCCTCTTTGCTACCTGCTGTGT 4123 37 100.0 34 ..................................... GACGTTCCCAAAGCTCTAGCCGTAGATGGCATAA 4052 37 100.0 37 ..................................... GCATCGACCTACGACGCTTAGAATTAACCTTGGTTAA 3978 37 100.0 34 ..................................... GGGCATCACTTCTATCTCTAAAATCTCGCCTGTC 3907 37 100.0 32 ..................................... GTGAAAATATTCGGATTCTTAAAGTCAGTAGC 3838 37 100.0 33 ..................................... GGGCAGTGGCCAACAAAATACTAGGTACTTAGA 3768 37 100.0 34 ..................................... TGAACAGCTTAAGGTGCTTAAGTACTACGGAATT 3697 37 100.0 35 ..................................... AGTATAAGCGGTGGTAAAGATAGTCTTGTTGTATC 3625 37 100.0 35 ..................................... GTTCCATGGCTCGGCTAGTCACCCTATCACAGTAG 3553 37 100.0 37 ..................................... AAGCTACCGTCTTTTACCGAATCTACATCAGGCTTGG 3479 37 100.0 35 ..................................... ACGGACGACAAGCTGACCGGAGCCGGAAATACCTC 3407 37 100.0 36 ..................................... TGGGCAGAGAAAGTCTGGAACAGCTCCGGAGCCAAC 3334 37 100.0 37 ..................................... CTAAAAATTTAAACAGATATGACTTAGGCGGATCACT 3260 37 100.0 36 ..................................... CTGCAAATACTAACGCTAATGTTGCTGCTGGAAGAG 3187 37 100.0 35 ..................................... ACATTACCTAGAGATATCCCTGCGGAGGCAGTGAC 3115 37 100.0 34 ..................................... ATAAATTGGTGCATCGAACAGCATAAATATTTCC 3044 37 100.0 35 ..................................... TCTTCATACTTCCCACAGTCTTGCGGGTGCGTGAA 2972 37 100.0 37 ..................................... GGCAATCTGCTTATGAACACCTATCCTTGCCATCTCC 2898 37 100.0 34 ..................................... CTCGCATCGCTACGGCTAGGCTATCCCAGGCGGC 2827 37 100.0 34 ..................................... CAACTTAGTCCCTTCACTGTCTGGCGCGTGGGCA 2756 37 100.0 34 ..................................... CAGCGAGGCTCGTTCCTCTGGCTCTCCTTCGAGA 2685 37 100.0 38 ..................................... AATAGATATCCCATGAACAACCAAATGGCTGAAAAAAA 2610 37 100.0 36 ..................................... CCTCAATCCACTCATGGATTTTGTATTCACGTTTGC 2537 37 100.0 37 ..................................... GAGGATCGCTCGTAGAAGCAATCTTTTGAATTGGTTT 2463 37 100.0 37 ..................................... ATTCCCAGACAGCAGCCTGGAAATGACTTACTTTTTG 2389 37 100.0 35 ..................................... AAATCTGCGTAGATACAAGCGCACCCTTGATAGCT 2317 37 100.0 35 ..................................... CGCCAGACTCGAAGGCGGCTGTGTCGGGCTCAAAA 2245 37 100.0 36 ..................................... CGGTTTCGTCATCCCCTGGTAAATCGAATCCGCCAA 2172 37 97.3 33 ....................................C TCATCTTTAATTTCAATGCGATCGCTCTGTTTT 2102 36 73.0 0 AC..T..A.A.................T..A-..G.G | A [2074] ========== ====== ====== ====== ===================================== ======================================== ================== 41 37 99.3 35 GTTGCAACTTACACAAATCCCTATTAGGGATTGAAAA # Left flank : CCAATACTGATAGTCTTTTTATCTGCCACTACCACGGCCATCACTATCGATATTAGCAATATGCTGCCCAAACGCTGGAAATTTCATAAGATGCTCCCTAATGACCTATCTAATATCATCTACAAAAATGAGTGGGAATAACAGGATCACTGAGCTAGCATTTGGCATTTTGGCAGAAAATGAACTTACAGGCTTTTTTTGGTCAGATATTAATTAATGATCATCAATGGGAAATGTTGAGTTTCTGTAATTGCGCCAACCTGTAGGTGTTTTACACACAAAGGAAAATGTTATGCTTGAAAGCTTTGTCTGTTCTGGGTTTGAACCATTCACATCAAAACAGAGGTTCGCGCAATGTCTGAAACTTCTACCAGTAAAGCTTTTGAGCCGATTTTTTCCAAGCCACTCTTGACACTGCGATCGCTCAAACGCTATATTTATTCCAGGTCTGCACTACTGAACCTTGAAAACCAAATACAGCAAGGCTTCTAGATCAAACA # Right flank : AGAGTAAGGTTTGTTCATAGCGACTACCTTCTGCTCTCAGCCTTCTACCTTCAAGTGGTATATTCAGCGTTAATTTTCACGTAGTCATAACTTAAATCACAACCCCAAGCTTTACCGGAACCATGACCGTTACCAATACTTACAGAAATTAACACGGTATCTTCCTTAAGATACGCACCCGCAGCTGCTTTTTGTAGATATTCACTTGCTGCTTTGCGATCAAAAGCTAGGGGTTGACCATTTTCCATCATTAAAAAATTCCCTAACTGAATTCTAAGGTTCTCTTGTTCAAAAGGTACACCCGCACGTCCGGCAGCCGCCGCAATGCGTCCCCAGTTAGGATCACGGCCAAAAATCGCAGATTTGACTAAAGATGAACCAGCAATAGTTTTGGCAATTTGACGTGCTGCTTGTTCATCCTGTGTGCCAGTGACTTGCACTTCCACTAGACAAGTTGCACCCTCTCCATCACGAGCGATCGCTTTTGCTAAATGCTGGCA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTACACAAATCCCTATTAGGGATTGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 1 9548-9074 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRQW01000080.1 Fischerella muscicola CCMEE 5323 NODE_104_length_9581_cov_27.453918, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 9547 37 100.0 34 ..................................... CCGATCAGGCTACCTCGGAAGAAGGGCATATCCC 9476 37 100.0 34 ..................................... ACGGTATACGCGTCTCGTCCTGCCACAGCACTGA 9405 37 100.0 40 ..................................... GATCGCCAGATTGGGGCGCTGCCCCTCATATGGATGGTGC 9328 37 100.0 38 ..................................... CTGCGATAAATGACTTGTTAAACCCCAACGTGTACATG 9253 37 100.0 35 ..................................... CCGCACCCTCTGATACTGGTACGCTTAAATTGAAT 9181 37 97.3 34 ..................A.................. CGATTTTGATTATCGAAAAGGCGTTAGCTGTTGC 9110 37 91.9 0 .......T................C........G... | ========== ====== ====== ====== ===================================== ======================================== ================== 7 37 98.5 36 GTTGCAACTTACACAAATCCCTATTAGGGATTGAAAC # Left flank : TCCGGTTTGTCGGGGGGAAAGGGGTAGTGATATCCCCGCCCCACCCATTAAACTGAGGCGGATTACTCGAAAATCCGAAAACAGATC # Right flank : TTATAAAGAAGGCTTGTTGAAAGCAATAAAAGTTACTATAAAAGCTCTTCACTTTTTACCCTTCTGCCTTCTGCCTTCTGTCTTCTGTCTTCTGCCTCCTATAACACTCCTTTAGAACTGGGGATCAACCCTGCACGACGGGGATCAATCTCTATCGCCATCCGCATTGCCCTCGCAAATGCCTTAAATGTGGCTTCTATAATGTGATGAGAATTAATCCCATCTAACTGGCGAATGTGCAATGTCATCTGGCTATTACCAGCCAAGGCTACAAAAAATTCTCGTACTAGCTGGGTGTCATAAGTTCCAACGCGCTGGGTAGGGATTTGCAAACCGTAGCTGAGATGGGGACGACCCGAAAAATCGAGTGCTACCTGAATTAAGGCTTCATCAAGAGGTGCAAGAAAGTTACCAAAGCGGACAATGCCTTTTTTGTCACCTAATGCTTTACTGATTGCTTGTCCTAAGGTAATGCCTACATCTTCGTTGGTGTGGTGGTC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:0, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTACACAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 1 7913-50 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRQW01000103.1 Fischerella muscicola CCMEE 5323 NODE_138_length_12903_cov_25.647989, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 7912 37 100.0 34 ..................................... ATCATATACTAGGGCCACCTCGTCGCCCTTTTTC 7841 37 100.0 36 ..................................... CAGACAGATAGAAAGCTTCTGGACTTAAAATTTCTG 7768 37 100.0 31 ..................................... ATATAGCTTTCGACGGGGAGAAACCCGTAGG 7700 37 100.0 33 ..................................... GATTGTGTAATAATCCAAATTCCCAGGCGTGAA 7630 37 100.0 35 ..................................... TCTAGAGACTTCTGAGAATACTTGCGATCGCTCGA 7558 37 100.0 38 ..................................... CCGCCAATCCAAAGCCATCTTCCGCTTGGAAGCGCTTT 7483 37 100.0 34 ..................................... TACACAATCTTATCGAACAGGGTATCTTTACACT 7412 37 100.0 34 ..................................... AAGGTGGTAGGGAAATTGAAAGAGTAATTATTCG 7341 37 100.0 35 ..................................... CCGAACTTTTCTTGCATTCTCGACCAGAACCCGAA 7269 37 100.0 35 ..................................... GCTTTTATTCGCTGCGATCGCTCTAATGATAAACT 7197 37 100.0 40 ..................................... ATCCACAGGTAAAGTTAGTGTGTATGCGGCGGACACTCCA 7120 37 100.0 34 ..................................... ATCTATCAAGACTTGACTTCTCCTCCTGCTTCTA 7049 37 100.0 38 ..................................... GTAGATCCGTACTTTGTGTAACCGGGGTTTTCTGCGGC 6974 37 100.0 35 ..................................... TCATTACATGGCTTGAAAGGACGAAAGATATTTCC 6902 37 100.0 34 ..................................... AACAACTCAAAAATGGATGAAAGCTTTATAGAGA 6831 37 100.0 35 ..................................... CCTGCACTTAAATATCCAATAACTCAAGCACGCTG 6759 37 100.0 33 ..................................... GTGAAAATCATGTCCGGGCGATCGCAAACAATT 6689 37 100.0 36 ..................................... CATTTCTATATACTTTTCCTTCATCATGTACATTTT 6616 37 100.0 34 ..................................... CATAAGCTTGGTAATTTTAGCAAGTGCGGGAATT 6545 37 100.0 36 ..................................... AACTTCGACTAGGACTCGATCGACGGCTGGGTTGTA 6472 37 100.0 34 ..................................... GTGCTATAGGTTGCCGGTGGAATTGCTACTTGGC 6401 37 100.0 36 ..................................... GCAAAATTCTTACTCGGATATGTAACTCCAATTACT 6328 37 100.0 35 ..................................... TCTGCTGGAACATATCTAGGATCGCTATAATATCC 6256 37 100.0 34 ..................................... TATTTTGATGGGTCTTTTGTCTTCATCCCTCCGG 6185 37 100.0 36 ..................................... AACAAAAATCAAGATCTTGAACACCTAGCAATATCC 6112 37 100.0 33 ..................................... ATTTAAATCTTTTCCAAAAACTCTTGCGATCGC 6042 37 100.0 35 ..................................... ATCCGGGCAGAGCTGGCATTCTTTGCGGAGAATGC 5970 37 100.0 36 ..................................... TACCTAAAAAACAAAGGATGGAATATCGTTGAACTC 5897 37 100.0 33 ..................................... AAACACGAGCTGTACAAGAGGGCCGCGCTGGCT 5827 37 100.0 35 ..................................... GAGTTCGGACTGCTTCTGGCGGCTATTAGGCTTGT 5755 37 100.0 35 ..................................... ACTTAAGATATTCACTTGCTCAAGAGTGCTATGGA 5683 37 100.0 34 ..................................... CAAATCTGAATTCCATTTCATTTCTCCTTTATTT 5612 37 100.0 33 ..................................... AAGATAAAAACCATCCTTTATATAAGGAAGTAA 5542 37 100.0 36 ..................................... AGGGGATCCGATGGGTGATGAATAGGCGCCAGAGGA 5469 37 100.0 33 ..................................... GCCATCATACTTCCAGAATCTTGCTGTTTGATT 5399 37 100.0 34 ..................................... CTGGCCTTTCTGGATCTGATAGCCTACAAGGAAG 5328 37 100.0 37 ..................................... CAAGTACAGATCTGGGCGCCAGCATCCAGACTCCTCG 5254 37 100.0 37 ..................................... ATAGTCATCGGTCGGGCCGGATAAGTAATCATTCAGT 5180 37 100.0 34 ..................................... ATCCGAGGATGATGACAACAACAACGCCTCTATC 5109 37 100.0 33 ..................................... CCCTGGCAGTAGGAGGATCAAGCCCAAGGAGTT 5039 37 100.0 36 ..................................... CCATCCAATTACAATATTTCCAATCTTGTCATTAAG 4966 37 100.0 36 ..................................... ACGATTCCCCGTGATTTGTCTGCTTCATAATCTCTT 4893 37 100.0 39 ..................................... ATTGAAGACAATGAATTTGTCTGGAATGTAGAGAATTCA 4817 37 100.0 32 ..................................... TTGGCTCCTTAATTGGCTGCAAACACACTCGA 4748 37 100.0 36 ..................................... GATTTTTCCTGCTCTCGATACTCATGAACCAGTGAA 4675 37 100.0 34 ..................................... CCATTTAAATTCACTAAACAAGCCATCCAATAAC 4604 37 100.0 36 ..................................... CCGGCTGCTGTACAACTTACCGCGCGAAGATAGGAG 4531 37 100.0 37 ..................................... CTTTACCACCTATGTACGGAAATTCATCGAATTTAAG 4457 37 100.0 39 ..................................... TTAAGCCAACCGATACACCGCATTTAGTAGTTAAAGCCT 4381 37 100.0 36 ..................................... CCTAGGATAGCAAGTGCGGGCTCTTCCTCGAACAAC 4308 37 100.0 35 ..................................... GCCCTTGTCTGCCTCTAGGCTACCTGGGTACTACC 4236 37 100.0 37 ..................................... AATACAATTCCTTGTGGGTGGGGCAGTTGACACACTT 4162 37 100.0 36 ..................................... TTTAAGATCGTGTTGTGATTGCTCTATCTCACTGCC 4089 37 100.0 38 ..................................... ACTTCGCCGTAACTGCTTTAGCCAAATCCTAAATTTGG 4014 37 100.0 37 ..................................... TCTGCCAGTAAGATGGGCTGACCACTCATCGCGGTGA 3940 37 100.0 36 ..................................... TGCACAGCAGGTAATGTCAGCACTACTGACATTAAA 3867 37 100.0 38 ..................................... ATTGGATATTTAAGTGCAGGGACAAAAAGCGATCGCCT 3792 37 100.0 34 ..................................... GCATATTGGGGAAGTAACAGGGAATGTTAGTAAT 3721 37 100.0 35 ..................................... ATATGAATACTGGATAAAAAAAGATGATATTGATT 3649 37 100.0 36 ..................................... ATCAAATCCTTGAAGGTGCAGTGGAAGTAGAATTAA 3576 37 100.0 36 ..................................... GAGAAAGCGATCGCTTTACCAAAAGTCAGTGATGAT 3503 37 100.0 35 ..................................... CATATCCGACCCCGTACTCGCCGCCTCCACCGCTA 3431 37 100.0 35 ..................................... GAATTTCCAGAGGCTGATCAAGAAATGGAGGGTAA 3359 37 100.0 37 ..................................... ATCCGAAGAAACCGAGCCAGTACGCGGCAGAGTTTGA 3285 37 100.0 33 ..................................... CTGGCAGGGTCGTGATAGCTGGAACTATTACAG 3215 37 100.0 37 ..................................... CAACCAACACTACTTTTGCTTCAATTCTCCTTGATGC 3141 37 100.0 34 ..................................... TGCAATATCTCCAACCAACCCGCGTAGGTTGGTA 3070 37 100.0 36 ..................................... CAAAGGGAATCCCGCCTGAGCCTGGGCCAAGGTAAA 2997 37 100.0 36 ..................................... TGTGCCGTGGTTAGGCTGGAGCATGGTTGGCTCCTA 2924 37 100.0 35 ..................................... GAAAGGCCAGGTATCCAGCCTAAGCAGTCCGACCT 2852 37 100.0 36 ..................................... ACCTGATCTACCGCAATTCGCTGATTATCGTGGCAA 2779 37 100.0 40 ..................................... GCACACCACTGTTCCCACTGGCAAGGGACGCTTGGTGGTG 2702 37 100.0 36 ..................................... CTCAAAGGTGATCTGGAAACAGCTAATTACCTAATT 2629 37 100.0 41 ..................................... CTAATATCTTAATCGGAAGAAGAACAGATTCACTTGTCCCA 2551 37 100.0 34 ..................................... TGCTGGGGCTAACGACAACAACGGTGACAGGCTG 2480 37 100.0 41 ..................................... GAAAAAAATTGAAGAGCAAGGAAACCAGATATTGTGGGGAA 2402 37 100.0 34 ..................................... ACTTGCCACAAATCTTTTAACTGCTGGTAGTGCT 2331 37 100.0 34 ..................................... TACCAAGACTCGGCTGATCTCCATAAACTGGCAC 2260 37 100.0 36 ..................................... CGGGGGGGTTCTGGAGGGGATGCCTTTATCCATCCC 2187 37 100.0 35 ..................................... CAAGCAGCTCTGCAAGTTAGCCAGGGCCTTACCCT 2115 37 100.0 36 ..................................... GCAGAACTAGCGATCGCACCTAACCCAAGCAAAAAA 2042 37 100.0 34 ..................................... ACCAATTAGCAAATCGTACGGTTTAACTGGTTCT 1971 37 100.0 37 ..................................... CTATCACTTACCTGAACTGCCAAGTTCTTGACTTGGA 1897 37 100.0 35 ..................................... ATGGTAGAACCAAGGGTAACAAGGCGAGTCCGAGT 1825 37 100.0 33 ..................................... AAACGCTCGACTAACAGACACAACTGGGCAGGA 1755 37 100.0 34 ..................................... AAAAAGAACCGTAACAGATAAGGGTAACAGATGC 1684 37 100.0 40 ..................................... AGTTGCAAAAGAGCTATCCCCTGCGGAAAGAGCATCCAAG 1607 37 100.0 34 ..................................... ACCCAACAGACAAACCTGCTGACGGCTACTTCAG 1536 37 100.0 37 ..................................... AATTAATTCTTGTTTATCTAGCATTAACGTGACTCCT 1462 37 100.0 33 ..................................... AGCCCCAGCTTTGACGTGATTCAAGAACCCATA 1392 37 100.0 36 ..................................... TCGGTCTATAATCTCGTTATTAAGAGGTAGGTCTTG 1319 37 100.0 34 ..................................... GCTTTCTATCTTGCCAGATGCTGAGGCTGACCAG 1248 37 100.0 37 ..................................... GTACAATCCCCCAGTCAACGTCTCTAGGTCATACCAT 1174 37 100.0 35 ..................................... ACGGTGCTAAAAGATACACCATCTACTGAGACTTC 1102 37 100.0 39 ..................................... GCAAGTAATCGGGTACTTGAGAATAAAATGGTTGCGATC 1026 37 100.0 35 ..................................... GCTAATGATAAAAAGTGGATTATCAAAGCATTAGA 954 37 100.0 33 ..................................... CAGAGTGCCAGTCAGTGAACGGGAGAGACGAAA 884 37 100.0 40 ..................................... AAAAACCTTGAATCTCGTCCAAGAGAGTGGAGCATCTTGT 807 37 100.0 35 ..................................... CCTAACATTATGTGATTGATACCACGCCTAATTAA 735 37 100.0 34 ..................................... CTGGCTCCTGGGCTTCCTTGGCTTTTGCCTTGGG 664 37 100.0 35 ..................................... AGCGATAACCGGACTAGCTCCAGAGGGCATATTTT 592 37 100.0 34 ..................................... GATTGTTGATCCTGTCACTATCCAAAAGCAATTG 521 37 100.0 35 ..................................... AATGTATCTTTGCAATCGAATATGTTTGCTTTTTC 449 37 100.0 35 ..................................... GTAGCGATCGCGAGCTTGGAGAAACCACGAGCGAG 377 37 100.0 40 ..................................... AGCCTGTGGAGCAACTGTAAGACCAAAAGCTGTTACGGCT 300 37 100.0 37 ..................................... ATCGCAAAATGCGATCGCCTCTTCAAAACTCCAGTTC 226 37 100.0 34 ..................................... CCCGAAGATTCCGGTGGACAGTGGTTACCGGGAC 155 37 100.0 32 ..................................... ATGGGGCATGTGACGGTATATGCGAGTCGCCC 86 37 91.9 0 .................................GTG. | ========== ====== ====== ====== ===================================== ========================================= ================== 109 37 99.9 35 GTTGCAACTTACACAAATCCCTATTAGGGATTGAAAC # Left flank : TTCAAAGTTGTCTGATAATTTATTGGACAACCTCAGAGAAATGATTTAAAGCTGGCTATCTACTCAACCTACCGACAACTTGATTGCATTCCTAAGTAACCTTTGTGTAAAGTTATGGTGTTTTTAAACGCAGAGGGACGCAAAGTTAGCGCTGAGGTTCGCAGAGTTTTTCAGAATTATATTCGTTACGAGTTTGTGAAATTTTGTACTAAGGTTGTTGAGGATAATAGGGAATGTTGAGTTTCTGTAGTTGCGCCAACCTGTAGGTGTTTTATATAAAGACTCAAATTTTCTGCCTGAAAGCTATGGCTGTTGCGGGTTTGAACCATTCACATCAAAACAGAGGTTTGCGCTATGTCTGAAACTCTTACCAGTAAAGCTTTTGAGGCAATTTTTTTCAAGTCACTCTTGACACTGCGATCGCTCAAAAGCTATATTTACTCCAGGTCTGCACCACTGAACCTTGAAAATCAAATACAGCAAGGCTTCCAAATTGAGCA # Right flank : CGACTATCAGTCGCTCACAAGAGTGAGTAACTTTGAACTACTCCAGGCTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTACACAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : NA // Array 1 592-51 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRQW01000152.1 Fischerella muscicola CCMEE 5323 NODE_202_length_7925_cov_27.553818, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================== ================== 591 35 100.0 38 ................................... ATAAGTTCCCAGATCTGTCCGCTATGGACAAAGGTCAA 518 35 100.0 37 ................................... GCTGCTGCTGCATACTTCCTCCCTGACGCAAGAACTC 446 35 100.0 40 ................................... TTCAGAGAGCCGCTCGTCTGGTTTGCCGCAAGGATCAGAT 371 35 100.0 35 ................................... TCTCTACCAGTGACTCCCACATTCTGCTTAAATTC 301 35 100.0 38 ................................... TTAGTTGTACCAACTACAAACCCACATCCAAACAAATC 228 35 100.0 35 ................................... TATAAGCAAAGCTACGGTCAATCCCAGCACAATTG 158 35 100.0 38 ................................... TTCATCAAGCAGTTGCGTAAGCAACTGTAGTTCTTCTT 85 35 91.4 0 ...............................GTG. | ========== ====== ====== ====== =================================== ======================================== ================== 8 35 98.9 37 GTTTTAAATCACTTACCCCTCACGGGGATGAAAAC # Left flank : TTGAAAAAGTTTCTCAAGCACTGGGAAGAAAAGCTGCAATCTGAGTTAACGCACCCAAATACAGGATATAAAGTTAGCTTTCGCAGGTGTTTAGAGTTACAAGTGCGGGAGTATGTAGCTTGTCTGATGGGAGAGGTGAAGATATATAGACCAATGATTTGGAAACCTTAATAGAGAGATTGCATTGTGTTGGTTGCTATGCTATTGTTTACACCAACACCTGTACCTTGAAAACTTAATCAATACATATTCTCTGCTTGTAACCTGATAGTTAGTTTCCTTAAGGCATTTTGTTAAGAAGTGTAAACTGAGGGGGTCGTCTAACAGACCAAAGGCTGATTGTTTCGTTGATCCCCTCAGATAACTTAATGTGTCAGGGTTTGAGTTAGTTGCAGACTCTAGTTATTGTCAATAATAGTGGTTTATTGACAGGTAAAATAGACCCCCCTCAGTTTTACAGTTCTGTAAGCTTTATTTGGCAAGCTTTCTGTAAGAGTAGA # Right flank : CGACTATCAGTCGCTCACAAGAGTGAGTAACTTTGAACTACTCCAGGCTAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAAATCACTTACCCCTCACGGGGATGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA // Array 1 11-5561 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRQW01000024.1 Fischerella muscicola CCMEE 5323 NODE_27_length_9688_cov_19.638624, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 11 37 100.0 41 ..................................... CGAGATCGCCAGCTACGGCGAAGTTAAATTTCACGTAAACG 89 37 100.0 35 ..................................... GACTACTACAGAGGAATTGAGCGCCAAGCAAAAGA 161 37 100.0 35 ..................................... AACCTCATTTCGTTTCTTGGATATCTCGTAATGAG 233 37 100.0 32 ..................................... TGGTAATTTGCGCCACTCTTCGCAAAAGTCAT 302 37 100.0 35 ..................................... GCCTAAGGGTTCCTGACCTGTGACCAACCCTGTGC 374 37 100.0 35 ..................................... AAAAGCCTTGCAAATAAAGCTTTTTGGCATTTTTA 446 37 100.0 36 ..................................... GAATTTCCCCTCTAAAATTTCACCCATTCAAATTAG 519 37 100.0 33 ..................................... CCCCCTAACCTTAATCATTTTACCACGGATCAT 589 37 100.0 36 ..................................... TCATTAGACCTGTCCGAAGTTAATATTTCGGACAAG 662 37 100.0 41 ..................................... GTTTTATCTCCAGAAAATCCTTTTCTGGAGATTTTTGAAAA 740 37 100.0 33 ..................................... GAAAATCTAGAAAAGAAGTAACATTTAAATCTG 810 37 100.0 40 ..................................... TCAATAAAAGACTCTAGAACAGCTGATTCAGTAGAAGAAA 887 37 100.0 36 ..................................... TTCTAAATATTTTAAAGGATTGCTAATTGTATAAAT 960 37 100.0 33 ..................................... GCAAATCAGGCGCTAATTATTTACGGGCAGGGA 1030 37 100.0 38 ..................................... ACATGACATAATGGATATGTAAGGGGATAGGAGACAGG 1105 37 100.0 36 ..................................... AAAAATTATATAATCACCAGACATAACATCTAAAAT 1178 37 100.0 36 ..................................... GGCCTCCAGCAGCCGGAGGCCTCAATTAATTTGGAG 1251 37 100.0 35 ..................................... TACTTGACGAGGGGTGATTTGAGGTAAATTATTTA 1323 37 100.0 38 ..................................... ACCCGAGAATCGAAAGGATCCTCCAAAAGCCTGCCCGT 1398 37 100.0 35 ..................................... AAGGAAGAAATATTTAGAAGAGAGAAGAAAGCAGG 1470 37 100.0 38 ..................................... ACTCTTCCCACTCTTCCCAACCATTTTCCCCCCATTCC 1545 37 100.0 32 ..................................... CTAAGGTCTGAGATACAAAGGTAAGGCCCCGA 1614 37 100.0 35 ..................................... ACGGGATGGCTTTTGGCTGGTGCTGATGCCTACTA 1686 37 100.0 35 ..................................... ATCGGTGAGTGCTAGCTTGCCCTGAGCGACCTCAA 1758 37 100.0 38 ..................................... CTCTCCATCGATCGCCTGATATTTATACGGATCCCCTT 1833 37 100.0 41 ..................................... GCTCTAGCTGCGCCTTGCTCGCCCGCTTCGACGATCATCAA 1911 37 100.0 34 ..................................... GTAATCGGTGATTTGCTGCACTAATCTAGGAATT 1982 37 100.0 34 ..................................... GTTTTTTACGACAAGCAATCCACAGGTGAAGTTA 2053 37 100.0 35 ..................................... TTTATCTGTCCACCAAACAAACGGATCTCCTATTC 2125 37 100.0 37 ..................................... GACGCAGATTCTAGAGATGGTGAAAAATTCATCTGCA 2199 37 100.0 35 ..................................... GATAGGGATGCATATATCCAGTGGACATTTGAGCA 2271 37 100.0 35 ..................................... CCGTCGCTGTGTGCGAATGCTGGACAAGTCCTCTA 2343 37 100.0 36 ..................................... AGGATCGATGTGTTCAGTAATGCGAGTTTCATTTGG 2416 37 100.0 35 ..................................... ACGAATTTTATACTTTTGGCAACTCCTAATACTAT 2488 37 100.0 34 ..................................... TGCAGCCAATTAAGGAGCCAGTAGCAGACTGAAG 2559 37 100.0 34 ..................................... TTCTCTACGATCACTTGCCCTACCCTCAATCCTG 2630 37 100.0 37 ..................................... AGCTTTGTCTTGCTAGTTTCATGACGCCCATAAGTCG 2704 37 100.0 35 ..................................... TGAGAACAGCGACTTAGTTAAACAGGCTAAGGAAA 2776 37 100.0 34 ..................................... CCTGGTGTTTGATGCGGGGACTTTTGATGCGGGG 2847 37 100.0 33 ..................................... AACTTATCAACAACATGACCGCAATTTGAACAC 2917 37 100.0 34 ..................................... TCCTCAAGAGTTGTCTGGCTTGTATACTCCTGAC 2988 37 100.0 36 ..................................... ACAAAGTTTTCAAATCCAAAGCATATAAAGAAGCAC 3061 37 100.0 36 ..................................... ACATTCTTGAATTGCTTTTGTGAGAATAGCTAAAAC 3134 37 100.0 34 ..................................... CGCTGCTTATGTTTATCAGCAATTGCCAGGAATT 3205 37 100.0 33 ..................................... CAATTGCTTTGATAATTGCTGGTTTCAACTCCG 3275 37 100.0 35 ..................................... AAAACATACGCAAATGCAGTAGTTTTTAGACTTTT 3347 37 100.0 42 ..................................... TATTCCCTGACTGGCTTATACTGTTTACGAAAAGATGGTAGA 3426 37 100.0 35 ..................................... ACGCCACTGTGCGATCGCATTTTCAATATCTTGTT 3498 37 100.0 35 ..................................... AACATCTGTCAACGGCAAAAATGAAATACAAGATC 3570 37 100.0 34 ..................................... CCCAGAGACCTAAACAAAAATACCCCTGAGAAGT 3641 37 100.0 35 ..................................... AATTTCTTGCATAATCCCTCCTTAAACGATAAACC 3713 37 100.0 35 ..................................... CGAAACTGCCAGGCAAAACCTGAAAAAAACTGGGA 3785 37 100.0 36 ..................................... GCGGATATGGAAAGCACTGATGATGCCGTGTCTGCG 3858 37 100.0 34 ..................................... CGCATCAAACAATTCACGAATATAAAAGTAGAAG 3929 37 100.0 35 ..................................... AGGGCGAGATGAATTCACTTTTGATTACTCCTAAT 4001 37 100.0 33 ..................................... TTTGTACTTTTCTTATCTTGGAAGAACTGAAGA 4071 37 100.0 37 ..................................... CAGTTGGCGCTGATAATTGTAGTTCTTGCTGGGTTGC 4145 37 100.0 34 ..................................... TGCTTGAACAAAGTCGATAATCTAACTCTGGATG 4216 37 100.0 35 ..................................... CCGATGGGTGGCCCGTTGCGTACAGAATAGCGATC 4288 37 100.0 35 ..................................... TTTAGGATAGGCATCTTTTATACTCCGGTATAGAC 4360 37 100.0 32 ..................................... ACCGCTGATCCCGGGACATCCAGGTTGACAGG 4429 37 100.0 38 ..................................... AGTGCGATCGCTCCAACGAAAAATAAAAAAGCTAATTG 4504 37 100.0 33 ..................................... ATCCCCTTAAATTTACAACAGATACGGTAAACC 4574 37 100.0 34 ..................................... ACCGCCTGAAAGACCAGGTGCAGGAACAAGATGG 4645 37 100.0 35 ..................................... TGACGGGTAGCGGGAGACAAGCTGTAGCCGCCAAG 4717 37 100.0 34 ..................................... GCCACCATCCCAACTCATGACATTCATCAAGAAT 4788 37 100.0 36 ..................................... CTGGATAGATTTATTGCGAGCTTCATCAATATCCTT 4861 37 100.0 35 ..................................... GAAATCAAAGGGACGGTAGAATCCAAGGAACGGCC 4933 37 100.0 41 ..................................... AAGAAGTTGGGCAGCAGTTGATAGAAAAGTTCACTGGGCAA 5011 37 97.3 38 ...A................................. CGCCAGTGCCTTGCCCTCTGACTCGGAGTAGGTATAGG 5086 37 97.3 36 ...A................................. TGTTTCCTCCCCTCACCTCATGTAACTACTATAGCG 5159 37 97.3 37 ...A................................. CATCGCCCTTTTGAAAAGCTGGTGAATTTGAGCCATA 5233 37 100.0 35 ..................................... GTCCGTAAGTCAGCCCGAAAGTCCGGGGATTAGTT 5305 37 100.0 36 ..................................... TCGCAGAGGGATGCTGTTTCACGCTGTTTCATCGAG 5378 37 100.0 35 ..................................... TTAATCATTATGTCAATAATGTCAATAGTTTTTTG 5450 37 100.0 38 ..................................... GACGAGAAATTTTGCTCATAATATCCGCTGCATCGTCA 5525 37 91.9 0 ..........A............C...T......... | ========== ====== ====== ====== ===================================== ========================================== ================== 77 37 99.8 36 GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Left flank : CTTCTAGGAAG # Right flank : CTTAATTGCAAGAAGTTTGAGATATAGCATTCCTAAATCATTCGCCAGAGACAAGAACCCCGACTTTTTGGAAAAGTCGGGGTTCTGGGCTTTGCGATTCTCACAGAATGATATAGAAGTGCCATAGATAAACCAGAAGCGATCGCCCCATCGCCCCTGCTAACCACTAACAACCAACAAACATGCTGTCGTAAGGAACGTAAAAGCTGTCTTGACAAAGCGATCGCTTCAAAAGAGGAAGATATACACAATCTGATGCTTAGCAAAAGGTGGGTAGTATTTTAGGTTGTGGGCGACTGTTGAGTAGGATTTGTATAGGCGATCGCTAAACTTTTCGGAGAGGGCGTCGATGGGCTTGTAGGTTGAAAATAGTTGTTTATTTCTAAAATTTTTAGTTTAAATCACGCACCTCTTCTAGAAATCAAGATGACAAATCGAGTAATTTTCATTGGATTATCACTATTTGTATACGGAATAGCGCTTAGCTTGCCAGCCCTTGC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [10.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : NA // Array 1 10813-4304 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRQW01000642.1 Fischerella muscicola CCMEE 5323 NODE_1122_length_28118_cov_25.502489, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 10812 37 100.0 37 ..................................... CCGTAATCGGTCATTACGGGCGAATTTAGGATGTACA 10738 37 100.0 34 ..................................... AGTAAAGTATCGCAGGATCGCAGAAGGATATTGA 10667 37 100.0 34 ..................................... TTTGTCTTTTAAAATATAATTGCAAACCCATCCT 10596 37 100.0 34 ..................................... TTGATCGCGCCTTTCTCACCCTTTTTGTTCTTTC 10525 37 100.0 33 ..................................... GCAGAAGTGTTGTGCGCGGTGTAGTGCTGTTGA 10455 37 100.0 33 ..................................... AAGGCTCAAGGATAGAAAAATATTTCGCCCATC 10385 37 100.0 33 ..................................... GGAAAATATTGAAAAAAATATTTTTCCGTACGA 10315 37 100.0 41 ..................................... AGCAATTAATCCTGTAAATATATATAGGCTCATTCTGAAGA 10237 37 100.0 36 ..................................... AGCAATACCTCCAAATAAATTGGCTCCTCACTGTTT 10164 37 100.0 34 ..................................... AATGATCGCGAGATCACTGACTGCTACGGTACCC 10093 37 100.0 38 ..................................... AGCCGACGGGACTGCGGCATTCGGCAACATCGTAGGTA 10018 37 100.0 38 ..................................... ATCCGAGGAAGATGACAACGCCTCTATCGACATCTCAC 9943 37 100.0 40 ..................................... TCTAGGGATCCCTAGGTATAAATACTCAGGCTACCTTAGG 9866 37 100.0 33 ..................................... TAAATCGACTCCCAACAGACTCGCCACTTTCTC 9796 37 100.0 34 ..................................... AGATTAATAGGAATTGCGCCTGATTTTGTAGCCG 9725 37 100.0 34 ..................................... TAGTCTTTACCGACGGGGCTGAGATCTTCGTCGA 9654 37 100.0 35 ..................................... CTGTGTAGTACAGTTCCAAAGGGGGCACAGTCTCC 9582 37 100.0 35 ..................................... CTAGAGGATGCCAAAAGGAATCCTATATGATATAC 9510 37 100.0 34 ..................................... TTGTTGACTAGTGAATACATAGTATTGCCAGTCA 9439 37 100.0 35 ..................................... CTCAATTGCAGTACAAGCGCGCGACGGTATTTCAG 9367 37 100.0 34 ..................................... TGCCAGTACCATTCACCATCAAAGTCACCTTTGG 9296 37 100.0 36 ..................................... ATGCGATCGCTGGATTACTACTGGAGATGATCGCAG 9223 37 100.0 35 ..................................... TGTACTAGTACCTGCTCTTTCATAGGTTAAGCCTT 9151 37 100.0 38 ..................................... TCAACCACCGCTCCTATCGCTCCCCGGCGCATAGGCGA 9076 37 100.0 35 ..................................... TATCAAATGGACAAGTACGGATACTTGCCAGACAC 9004 37 100.0 35 ..................................... CTCTTGGTCTACGATGACTATGGATTCTGGGGGTG 8932 37 100.0 38 ..................................... TTTTAGTAGACTTTGGTATGGATTAAGCTTCGTGGCAA 8857 37 100.0 40 ..................................... ACCCCTAAAGCATTCGCTATCTTGGCATCATTCCTTACAC 8780 37 100.0 40 ..................................... ATCGCAGGCTGCCCATTCAAATCTTTAGCCGCAGAAGATT 8703 37 100.0 36 ..................................... ATGTCACCAGCTCGGTATTTAGCGATCGCATCGTTC 8630 37 100.0 35 ..................................... AACAGGTTTCCTAGGATCGCCCCGAGGAGTCCCTA 8558 37 100.0 34 ..................................... GCGATCGTGCAAATCCCATCGCTTTCTAAATCTA 8487 37 100.0 40 ..................................... GCATCTGGCAGTCTCTTTAGCAGCATCTGGGATCCTCAAC 8410 37 100.0 37 ..................................... AGAGATGACCAAGAGGCTGCTGCTAGGCCAAGTCAGG 8336 37 100.0 34 ..................................... GCCGGAGCGGGAGACACCGGGGCAACTATCTTAG 8265 37 100.0 38 ..................................... GGGCTCCAAAGTAGCTTACCCCTGGTATTTGATGCGGG 8190 37 100.0 36 ..................................... CAATCAGCAGCGCCCTGTCTATGCCAAGTGTCGCCC 8117 37 100.0 37 ..................................... GACTTTGCTCGTAAGAAAATGTCGCCGGACGACAAAC 8043 37 100.0 35 ..................................... TGCTGCACTGGAATCAGGAAACAAAGTAGGCAAAA 7971 37 100.0 34 ..................................... TGCCTCCATCGGAAACATGGATATTGTCGCAGGG 7900 37 100.0 35 ..................................... AAGTAATTCGGAATTATAGAGGGAAATTGAGGCAT 7828 37 100.0 38 ..................................... CCTTCGAACTGGGAGATCAGGCTATCTGGAGTGGCGAC 7753 37 100.0 34 ..................................... CCCATAGAATCGCCAGATCCGATGCCCTCTCAGC 7682 37 100.0 36 ..................................... CAAGCTGGAGATAGTCCCGGACAGTCGACCTGGGAT 7609 37 100.0 35 ..................................... TGCGATCGCCACTGGAACACGAATAGTTTTGATTG 7537 37 100.0 35 ..................................... CTTTTGATGCGGGGACTACGGGCAGTAAAGAACTG 7465 37 100.0 38 ..................................... TGGTGGCCTCGGAAACTACCAAACCAGCAGTCCGTAAA 7390 37 100.0 41 ..................................... TGATTTTTAGACATAATTTAATTACCCTCCAAATTTTACCA 7312 37 100.0 37 ..................................... ATAGAGCGCAAGGTGTATTCGCCGTCAGCAGTCAAAA 7238 37 100.0 37 ..................................... TTGCTCAAACCAGGGAAAAATCGGAGGCCCTTGAAAA 7164 37 100.0 34 ..................................... CTCTGATCTGCCAATTTTTGACATACTCAGACAA 7093 37 100.0 34 ..................................... ATTGCTTGGTGTAAACAAGACACCGCGACCGAAT 7022 37 100.0 35 ..................................... TGAAGATTACAACATTTTTGATAGAGAGAGGATAA 6950 37 100.0 36 ..................................... GGCAATAACGAAATCAGCAAGAGACGACGGACGCGG 6877 37 100.0 36 ..................................... AGCTAACTCATATTTAGCTTCTAGCAGTTGTTGTTG 6804 37 100.0 37 ..................................... AAGACACTCAACCAATAGCTCTGGGATTAGACCCAGG 6730 37 100.0 34 ..................................... GTATCCGGCGCGGGCAATCTCGTTGCCCACTGAA 6659 37 100.0 33 ..................................... AAGCGCGGACATGAGATTAACCAAGCTCATCGC 6589 37 100.0 34 ..................................... ATTTTGTGGCCTGATGCTGGCAGTACTTCAAATC 6518 37 100.0 35 ..................................... GCCTACTTCTGTGGGGTAACACAAGCAGCTGACTG 6446 37 100.0 36 ..................................... CAAGAAACTTGTAAAATCCATCTATATATTCAGAAT 6373 37 100.0 36 ..................................... CATTCATACTGCTGCCTCATTCGCTATTACTATTAA 6300 37 100.0 35 ..................................... GAACACAGGGAAAATCGAGACTTGGTTAAGGTCAA 6228 37 100.0 34 ..................................... ATGGCTCGGCATCTCGGCTACCGACAACGTATGA 6157 37 100.0 40 ..................................... ACACAAGCCCATCCCCAAAACCCGTAATCGTCATACACTA 6080 37 100.0 33 ..................................... ATGTCGTTTCGTAAGGAGGGTAATCTTAGTACT 6010 37 100.0 35 ..................................... TCATCTGTAAAGATGTCTTGGTCAAAGTTATCACA 5938 37 100.0 34 ..................................... TTGGAGGTAACAGCTTCCTAGCATTCTTGGTTAG 5867 37 100.0 36 ..................................... TTGGTTGGTGGAATTGAGATAGGATGCTGCTTTCAG 5794 37 100.0 36 ..................................... CTTCACCATCGTATAACTCTGTGGCTCTGTACTTCG 5721 37 100.0 34 ..................................... ATGAGTTACGAACAACTGCAACTACCCCTCGATA 5650 37 100.0 40 ..................................... GGACTAACAGCCAATGCAAACAATCGTGCAGAACAATTAT 5573 37 100.0 34 ..................................... TAGAAGTTCTAGTATCATGATGTACCTTCGTTGT 5502 37 100.0 37 ..................................... CAAATACATGCTTTCTGTTTTTCTTGTCGTATATCCG 5428 37 100.0 33 ..................................... CCGAGTAGCCCGGAGACGACCTTCTTATACCAA 5358 37 100.0 34 ..................................... CCCGTTGTTGTCGTTAGCACCAGCAAATAAGATA 5287 37 100.0 35 ..................................... ATAAGGATACGACCTTGGATGCCCAAGACTTGGTA 5215 37 100.0 36 ..................................... CTGAGCATCAAGAAGACCAGACAGGGTTTGGTTAAA 5142 37 100.0 34 ..................................... GGAGTAGTGATATGGAACACGATTATTTCGAGTA 5071 37 100.0 34 ..................................... GGAGCTCCTTGTGAAAGCGCAGCAGTTTGAGCAA 5000 37 100.0 36 ..................................... CCCTTGATCGTGTTGATGACGGGGGGAGGGGCTCCG 4927 37 100.0 40 ..................................... GGAGAAAAATCTTTGGCGCGATCGCCCCTTGTCTGCAAAA 4850 37 100.0 35 ..................................... AATCCTGGTGAAGAAGAATCTGGCAATGCCGGCGG 4778 37 100.0 37 ..................................... GAGAAGCAAGGCTTCCGCTCTTTGCGGAGCCTTGTCG 4704 37 100.0 37 ..................................... TTCCGCCTACAGCTACAGCAGTTATTACAGCACTTAA 4630 37 100.0 37 ..................................... CAACAGTACGCTAACAAGTACGGCTTAAATCCTGGTT 4556 37 91.9 34 .........A...TT...................... GCGAGACATCGCAAGGCTTCAAACCACAGGCTTG 4485 37 91.9 37 .........A...TT...................... TTAGTTCTGGGGGAATTGGGTTTAGCCGAAGGTTTGT 4411 37 91.9 34 .........A...TT...................... TTGACCCTCTTGCTAACCCCTTTGGTCATCCAGA 4340 37 91.9 0 .........A...TT...................... | ========== ====== ====== ====== ===================================== ========================================= ================== 90 37 99.6 36 GTTGCAACTTACACAAATCCCTATTAGGGATTGAAAC # Left flank : CCCGAAGATAAACGTCGTACCAAAATCCACAATATTCTCAAGTCTTACGGACAGTGGATGCAGTATTCTGTGTTTGAGTGCAACTTAACTGAAACCCAGTATGCTAAACTGAGGGCGCGTTTGGCAAAACTCATTAAACCTGATGAAGACAGCATCCGCTTCTATTTTCTTTGTGCTTGCTGTCAGGGTAAAATTGAGCGCATTGGTGGTGAAATGCCAATGGATACTACGGTGTTTTTTGCTTGATGATGGTGCAAATCAGTAGGTGTAGAAAAAAAGCAGTCAATTTTTGGGGCTGAAATACTGATCCTGTCTAAGTTAGAGGCTGAATAGATGCTAAATGGGATCTGCACCTTTTCTGTAATTATTGCCCTGACTACATTTGAGCCATTTTATACTCATTTGCTCTTGACAGTGCGATCGCTCAAACGCTATATTTACTCCAGGTCTGCACCACTGAACCTTGAAAATCAAATACAGCAAGGCTTCCAAATTGAGCA # Right flank : ATTTAATCCTTTAATAGTCATCCAAATATAGTACTTATATACTATGTGCTAAAACCAACTTGATTTTAAATCCCCATTCTTTCAACTGTTGAAGAATCTCTACTGTGTTCACTGCCTGTCTGCGTGGTGTAACAATCCTTATTACTTAACTATACTTAACTTATGGCTTTCTTCCTGATTATACTTTGCCGATAGTCACAAAAGGCGATAAGAGGTTTCATAGAATTTTGATATTAATAAATTTGCTTGAATCTTAGGAATTTGTGATAAACTAAGAAAAGAAGTTTAAATTCGGTTGTGCGGTTTGTTTTTATTTGTACTTAGTATTACAGACTTCTCCGGATCTAAAACTCTACGCCATTTGATTCTGGAGATGTTTTATGTCGATTTACGTTGGTAATCTGTCCTATGAGGTTGAGCAAGATGACCTCAAGCAGGTATTTTCCGAGTATGGAACTGTGAAGAGCGTTCAACTACCTGTAGACCGGGAAACTGGTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:0, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTACACAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA //