Array 1 84866-84166 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAECST010000021.1 Klebsiella pneumoniae strain CCBH27859 NODE_21_length_84865_cov_16.941053, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 84865 29 100.0 32 ............................. ATTGATATGATGCATTATCATCCCTTCTTTTT 84804 29 100.0 32 ............................. TTCTCTTCCGGCCACTGGGTGAACTGCGGGTC 84743 29 100.0 32 ............................. CATCCCTGTTAACGTGTTCATTAGTCCGTTAA 84682 29 100.0 32 ............................. GCTGATAGCTGCCAGATAATTAGCGTCAAAAA 84621 29 100.0 32 ............................. CGGCATGAACTTAGCATTCAGGTGCAGTTTTC 84560 29 100.0 32 ............................. GCAATAACGCCCTTCGGCATCACGCCTAACAA 84499 29 100.0 32 ............................. TGAACGGTGCGCGATTCGTTCATCGCCATCTT 84438 29 100.0 32 ............................. AGCTCTGAGTTTGAAGAATGCCTGGCCGCGTA 84377 29 100.0 32 ............................. GGCAGCGCCTCGACTGCACTGCCGATTTTGAG 84316 29 100.0 32 ............................. GCGGCGTCAGGTGTGTGGCAGAAAATTATTGC 84255 29 100.0 32 ............................. ACTGATATCACCGAACTGGCTCGGGCCATGAA 84194 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================ ================== 12 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : GTCCACTAACGTTATCGATCCTGAGGGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGCTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTGGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCGCGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATTC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1237-49 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAECST010000054.1 Klebsiella pneumoniae strain CCBH27859 NODE_53_length_36103_cov_19.213290, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1236 29 100.0 32 ............................. TTATTTCTAAACTCAGTTTTGTTTCATGCAGT 1175 29 100.0 32 ............................. GAGGAGCCTCAGTTGCTGGTATCCAGTGCCGG 1114 29 100.0 32 ............................. CGTCACTGTTCTTCAGCAGTTAACCCAATCAC 1053 29 100.0 32 ............................. GAGAGTCCGACAAGAAAAAAGGGGAGAATTAT 992 29 100.0 32 ............................. GCGACGACGCTCTGCTATCCCTCGCCGAAATG 931 29 100.0 32 ............................. AACGCTCAAGGGCTGGGTTGTCCCTCGGGTGG 870 29 100.0 32 ............................. TCCATCCTGACGGCGCAGACCATCGGCCAGCA 809 29 100.0 32 ............................. GATGCCAACCTAAAAAAGCTGGGCGCTTTGGT 748 29 100.0 32 ............................. CGCTGAAAATTCAGACCGACAGCCACATTGAT 687 29 100.0 32 ............................. TACTGAAAGACGGCGACAAGGATAACGCGATC 626 29 100.0 32 ............................. ACCCCTGGCTTTTTAGATACTCCAGTTGAAAG 565 29 100.0 32 ............................. CACGTACGCAAAATTAACCGTTCCAAAACCAT 504 29 100.0 32 ............................. ATGGCAAACCTTCGTAAAGAAGCGCGTGGCAG 443 29 100.0 32 ............................. GCCGCAGACAATTCATGGTATGGATGGTCACT 382 29 100.0 32 ............................. TCATTGAACAACTCACCCTGCGCATCAATGAG 321 29 100.0 32 ............................. GTGTTCAGCCTCGGTAACTTCTACGAATATAG 260 29 100.0 32 ............................. ACGGTCTTCAGGTGGCGCAATACGCCACCTGG 199 29 100.0 32 ............................. GTGTTCCAGCATGGAGCAACTCCGGTGGCGAT 138 29 100.0 32 ............................. GCGTTTTCTGAGATAACTAAAGCTCTTTTGGA 77 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 20 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCGTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : GATTGATATGATGCATTATCATCCCTTCTTTTTGTGTTCCCCGCGCCAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [45.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //