Array 1 2406655-2405634 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP054495.1 Flavobacterium columnare strain F2S4 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 2406654 36 100.0 30 .................................... TTTCTAGCTTTAGTCACCTCATCTTTTGAA 2406588 36 100.0 30 .................................... TCTGAGTACTGAAAATTATAGCCATTGTAA 2406522 36 100.0 30 .................................... TTTTATGTTTTTGACCGTAATCAAAAGATA 2406456 36 100.0 30 .................................... CGATTAATTTTAGATAAACCAAGAACTTTG 2406390 36 100.0 29 .................................... ATGATAAATAAGTTTTGTATGATGATGTA 2406325 36 100.0 29 .................................... ATTTCTTTTAGTCTTATTCTTTTCTTGAA 2406260 36 100.0 29 .................................... CCTGCTGTAATTGCTGTAATTGCTGAATA 2406195 36 100.0 30 .................................... AGTTAGATTTATATCAAGTATTTTAGCCTG 2406129 36 100.0 30 .................................... TCTATTACAGTGTAATATTCTTCAGGTATT 2406063 36 100.0 30 .................................... ATAAAATCCATTTTTTCAAAATAATTTAAA 2405997 36 100.0 30 .................................... GCATTTGATATTTTATAATTGTTCCGATTT 2405931 36 100.0 30 .................................... TCTACTGTTTTTATTAACTTGATAAACAGT 2405865 36 100.0 30 .................................... GTTTTTTGAATAAATAGTTCATAATCGTAA 2405799 36 97.2 29 ....A............................... ATTTGAGATTGGTGGATTAGCCTTATCAT 2405734 36 100.0 29 .................................... ACGCCTCTATTTCACGTTTATGGTAAAAA 2405669 36 69.4 0 .........................AGGGACGAGCG | ========== ====== ====== ====== ==================================== ============================== ================== 16 36 97.9 30 GTTGGGAAAGCCCTTATTTTGAAGGGTATCTACAAC # Left flank : TTTACTTAAATATTATGATTATAATACTGAAGAGTTGAAGGAAAAAATAAAAAATATGGATGAGGATGAAAAAGCCAAAATAGTTAATACTAAAGAGAATTATAACAAAATAACCAATGTTTTAATTAAAAAAGCACTTGTTTTAATTATCATTCGCAACAAAATGGCGCACAATCAATATCCTCCTAAATTTATTTACGATTTAGCTACTAGTTTTCAAAATGATAAAGGGAATAAAGATTGGGAAAAATTTGTACACCAAAAAGAAAGCGAATACTTTGCGACCTATTTCAACCGAGTTTTTGAAACCATAACAAAAGAATTATGGGAAAACAAAGAGAAAAAAGATAAAACACAGGTCTAAATACAATTGCTCTTTGACATTTTAAATTAGGATTAAAAAAATGACTACATTTGCAGTGATTAAAACAAAAAAAGTTCATTTTTTAGTATAAAAAATTGTAGTAATCCCTTACTATGAGAGGCTTACCAGCGTTTAG # Right flank : TTAAAAAATAGTCCAATGGACTATTTTAGCGAAGTAGCCAGGAGGCGCGTGGGCGTTTAAAACCGAATTCAATTTTTTTGAAGGAGGGACGAGCGTTAAGGAAGCTGTCCAAAAAGTACTAATTCAACATCCAGTTTGTCACTCCTACGTAAGGAGGAGTCTCATAATCAATAGTATGTAATTTCTTCCTTTGGTCAAAATCACAAGATTGCGAACTTTTTGGACAGTCTCTAGCAAAATAGCGAGCAGGCGTTTGAAACCAAATTCAATTATTTAAAAAATAGATAAACCATAATTCTTATTCATAGAAATACCTGTTTTTTTAAAATAACAAAAACAAACCTATAACACAATCAAGTAAATATGATCTGTATACTACCTCCTAAACTTCCTTATAATTTAACCTCAACACCTAAGATATTTTTGTAAATTTGATCCATCAAACCATTTGGAAACATGAAGGCTAAATATATTAATCCGTTTACCGACTTTGGATTTAA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGGGAAAGCCCTTATTTTGAAGGGTATCTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.30,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 2 2975655-2973261 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP054495.1 Flavobacterium columnare strain F2S4 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================================================= ================== 2975654 36 97.2 30 ......A............................. TCATCATTTATTAATGAATCAAAATTATCA TAATA,T [2975640,2975651] 2975582 36 100.0 30 .................................... ATTTTATTTTTTTCAAAGGTCAAGGATGGA 2975516 36 100.0 30 .................................... ACAAATATAAATTATGACAACTTTATCATT 2975450 36 100.0 29 .................................... TAAATAAAAAAAGTTTAGTAAAAGTTTAG 2975385 36 100.0 73 .................................... TCTGTTAATAATAGTAATCCCGTTTATATGGTTGTGGTTTACAAACACCAAGTCAATATTTGTTATAGGTGTG 2975276 36 94.4 30 T.....A............................. AATGGTCGGACAACCTATATACACCTTCTT AATAT [2975264] 2975205 36 100.0 30 .................................... TAAATCATCAGTAGTTCGTATTGTGGATAT 2975139 36 100.0 30 .................................... TTTAGAGTGCAATACGGAAATTTCCGAGTA 2975073 36 100.0 30 .................................... AAAAATTTGTTAAAGTTTTGTTGAAAAGTA 2975007 36 100.0 30 .................................... TTATTTTGAAAAAAATTCAATTATAGGGAT 2974941 36 100.0 30 .................................... CGAGCTAATTCTTCAGCTAAACGTTGTTTG 2974875 36 100.0 30 .................................... GCTGGTTTGAGAAACGAAGGCGAGGTCTTT 2974809 36 100.0 30 .................................... TTAGTAATCAAAATTAATTTTGAATTGCAT 2974743 36 100.0 30 .................................... TCACGCTTTAAGATTGCGTTCTTACGAAGC 2974677 36 100.0 30 .................................... ATGGTGCTGAGTAATTCATTACTCATAAAC 2974611 36 100.0 29 .................................... GTAAACAAGTTTATTATACCTGGCACGAT 2974546 36 100.0 30 .................................... TAAGCCGTGGGGTTCGATCCCGACACCGAA 2974480 36 100.0 29 .................................... GATATAAAGAGGTTGTACAATAAAACCGA 2974415 36 100.0 29 .................................... ATTTTTCAATTCACCGTGGGTCGCCACCC 2974350 36 100.0 30 .................................... AGAATGTAGAGATTTATTAAATGAAATTGA 2974284 36 100.0 30 .................................... TCACGCTAAAAATAATTTTAACATTGATTT 2974218 36 100.0 30 .................................... CAAATCACAATCATTTGAGATTGAATAGTG 2974152 36 100.0 30 .................................... TTATTGCCGGAACACCAGCGAATGAAGTAA 2974086 36 100.0 30 .................................... GAAAGAAGCTAAAGCGATGTTAAGAGCATT 2974020 36 100.0 30 .................................... ATATCTTTTCTTTTACAGGAAACAATAAGA 2973954 36 100.0 30 .................................... CAATTTTAATTTATGACTGAATTTGAAATG 2973888 36 100.0 30 .................................... AAAACCATAAGAATTATTTAAAAAGTTACC 2973822 36 100.0 30 .................................... CTTTTACAATGCACGAAATTGTAGAAAATG 2973756 36 100.0 30 .................................... TGGTCAAGCAGATTCTGTAGAGAAACTTCT 2973690 36 100.0 29 .................................... TTAAAAAACAAATTAAATCTTGAAGACCA 2973625 36 100.0 30 .................................... ATATAAAACTAAAAATAAATTTATAGTAAT 2973559 36 100.0 30 .................................... ACAAATAGTTAAATCCCAGCCGTTGTATTG 2973493 36 100.0 29 .................................... CTAATGGATTATTCATTGACGTAATTGAT 2973428 36 100.0 30 .................................... ATTATTAAACTACTTAATTTCCCATCTCTA 2973362 36 100.0 30 .................................... GCAACAACCCTCCGAACCAATACCACCAAA 2973296 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================================================= ================== 36 36 99.8 31 GTTGTGGTTTGATTAAAGATTAGAAAACACGATATT # Left flank : AAATGCTTGCCGAATTTAAAAAACGATTAAATGTATAATTATGATTTAAGCGAACAAGCTAAAATAGATTTGTTGCGTATTTATGAATATGGAATTGGTCAGTTTGGTCTAGACCAAGCTGATAAATATTTTGACATGATGCACGATTGTTTTAATAAAATTGCTAAAAATCCATATTTATTCCCTTTGGCATCAAATATTAAGTCAAATTATTACAAATGTGTTTGCGGAATTGACACCATCTATTATAAAGTTGTTACAAATGGAGTTATCATTACAACAATAGTTGGAAGGCAGGATTTTGAAATTCAAAATTTAGTTCATTGACATACACTATCAAATCGCAAATAACCAAACCTCATACTGATTGGTTTGATTAAAGATTAGAAACCGAGGGACGAGGTTCAACGAAGTCAAAACACGATATTATTTGGTTAAAAATTACGATTGTAATTTCAGTTGTGGTTTACAAACACCAAGTCAATATTTGTTATAGGTGT # Right flank : AGCTAACAGCTTAGTTATTAAATATCAAAGCATTAAGCCAAAATATCGTTAAAAAAAATGCTTCTTTTTTGGCACGTTATACCAAGATTGAAGCATTTTTTTATTTCTAAAACAGTTCCAGTTGGGTGGGTTGTGGTGCTTTAGGGGTTTCTACTTTACCCCAAAAGTTTTGTATGTTCCCAAATTGCTTGTCTGTAATTCGTAACATACTTACTTTTCCTGAAGGAGGCAGGAGTTTGTGTACACGTTTTTCATGTACATCGGCACTTTCGCTACTGGCACAATGCCGTATATATACCGAGTATTGCATCATACTAAAACCATCTTTCAAAAGTTGGTTCCGAAATCCAGAAGCATTTTTTCGGTCTTTCTTAGTCTCAGTAGGCAAATCAAAAAACACAAACAACCACATAATTCGATACCCGTTTAAATCCATAATTTTGGGTATTTTATCTTTTTACGATCGCCCGAAAAACACTGTTGTAAGGAACTTGCCGTTT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGGTTTGATTAAAGATTAGAAAACACGATATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTGTGGTTTGATTAAAGATTAGAAAACACGATATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //