Array 1 351488-346599 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNBG010000003.1 Phocea massiliensis strain 1001287H_170206_D6 NODE_3_length_409519_cov_88.4396, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 351487 33 100.0 35 ................................. AGGTTTTCAATGCTGTTTGTGTATTCCTGTTCTGT 351419 33 100.0 34 ................................. CCGATCTTTGCCTTCCGGTTGCACGCGGGGCAAA 351352 33 100.0 34 ................................. CCATTATTATTTTACCACAAAACAATGCCTAAAG 351285 33 100.0 34 ................................. CTCTCCCAGATGGCGGCAATCCTGGCCGCAGCCA 351218 33 100.0 35 ................................. CCCTTGGCCCGGTGGAGGACATCTGCCAGGGCCCG 351150 33 100.0 35 ................................. AAAATCAGATCACACGCGTCTTAAAGGTGTGTACC 351082 33 100.0 33 ................................. ATTTTGCGAATTGTCTTTTTGTAGTAATATTGG 351016 33 100.0 35 ................................. AAAATCAGATCACACGCGTCTTAAAGGTGTGTACC 350948 33 100.0 33 ................................. ATTTTGCGAATTGTCTTTTTGTAGTAATATTGG 350882 33 100.0 35 ................................. CTTGAATTTAAATATACACCGATAAACTCACACTG 350814 33 100.0 35 ................................. ACCAATTCCCCGGCGGGTTTGCTCTCCTTGGCCAC 350746 33 100.0 35 ................................. CACAAGAGAGTTGTTCCAGCCGCCACTGCACCAGA 350678 33 100.0 33 ................................. CGCTTTTATTTTTTTGGCTTTTTTGGGGGCCTG 350612 33 100.0 35 ................................. TTATGCCCATCTTGGTCATCCGGGTGGATATGGCC 350544 33 100.0 35 ................................. AAGTCTTGACCGGCCTGCGCCCAGGCGAGCTAATC 350476 33 100.0 35 ................................. CCGCTCTGGGGAAAACAACAATGCTCGGGCTGCAG 350408 33 100.0 36 ................................. TTGCCACAGCGGCGGCCACCGGCCCGGTAATCACGG 350339 33 100.0 34 ................................. CAACAGTTGTTTCAGTTGATCTATGAGGGCATAA 350272 33 100.0 34 ................................. GTCATAGCTGCCGCCCAGGGTAAGCACCCCATCG 350205 33 100.0 35 ................................. CCCATCTCCCGGTCCTCACAAAGCAAAACGCTCAC 350137 33 100.0 35 ................................. CAATACCTTGGCGGGGTAGTCCGCCCATTCGCACT 350069 33 100.0 36 ................................. CCACCAAGGTGCCAGTGCTGCGAGGCTTGACAAACA 350000 33 100.0 34 ................................. CTGGATGCGCAGAAACAGGCCCAGAAGGCGGTGG 349933 33 100.0 35 ................................. GGGAATTGGAGTTAAAAGGGATAAAATGCACCATC 349865 33 100.0 35 ................................. AAACGGCGCTCCCGAGCGCAGTGCCAACTCAATAC 349797 33 100.0 35 ................................. ATACAGAGCATCAGTAATGCAGACGATATTTTCTT 349729 33 100.0 34 ................................. CCCTTGGCCCGGTGGAGGACATCTGCCAGGGCCC 349662 33 100.0 33 ................................. TGGAGACCTGCATGACCCCAATGTCTTCCTGGC 349596 33 100.0 34 ................................. CTCCAAGAGCTGCTGGCGCTCGGCGCTTTGGGGA 349529 33 100.0 34 ................................. TGGCCCACCGTAAAATGTCGATGTAGTCATTGGG 349462 33 100.0 34 ................................. TTGGATGATTTTTTGGGGGTACAGGGTCACCCGG 349395 33 100.0 34 ................................. TGAAAGGTGTAAAGACCGCGTGCAGATGGCGAAA 349328 33 100.0 35 ................................. CGGGATGCCTACCGGGACCGAATCCGCTACAATTT 349260 33 100.0 33 ................................. ACCTGGTATTCCCGGTTGATAATATCATAACCA 349194 33 100.0 35 ................................. TCGTTCCACCCCGGCGGGAAGCCCTGCCCGCCGCC 349126 33 100.0 35 ................................. TCACAAAACCCACGGGCTTTCCCTCCATTCGCAAA 349058 33 100.0 34 ................................. CTGTGTCGCCTGCATATCGGCGTGGTGCAGGGCC 348991 33 100.0 33 ................................. AGTCCCTTTGCCATACGTGCCTCTAGCAATCGT 348925 33 100.0 36 ................................. ATCCCCCCGCAGGTTTTTCTGCCGGCGCATTAAGGC 348856 33 100.0 36 ................................. GGCAAAGACGTCCCGCAAATCCTCGTTGGGCATGAC 348787 33 100.0 34 ................................. CAGGTACTGGTCAAACCCCCGGCGCTGTAGGTCG 348720 33 100.0 36 ................................. TACGAGCACATCCATATGGTCCCAGGATCGCAAAAG 348651 33 100.0 36 ................................. GTTTTTTATACACTGGGAGGTGTGCCAAGTGAAAAA 348582 33 100.0 34 ................................. TTCTGTCCGACTACGTGAAGGAACACGAAGCCTT 348515 33 100.0 33 ................................. ACAGACGGTTTGCTGGGAATGGTGACGTTTGCG 348449 33 100.0 33 ................................. TTCCCAGCCGAAGGGCATTGACAAGGCAAACAC 348383 33 100.0 34 ................................. AAGATTTGGTGAAGATTTGGACGAGGGCGAACTT 348316 33 100.0 34 ................................. CAAATATTGCTTCAGCAGCAGCCATCATTACCAT 348249 33 100.0 35 ................................. CCCCACCGAGGCGTATTTTGCCAAAGGCTGCTATG 348181 33 100.0 33 ................................. GAAGGGGAATTCCAGCGGGCCAAGGCCCGGGGG 348115 33 100.0 33 ................................. CGATTCGTGCGATGATTTTTGAAGGATAATATC 348049 33 100.0 32 ................................. AGCTGGGCGCCCGCACCTATGTCCAAGCAACT 347984 33 100.0 35 ................................. AGATAGTACACCCGCTTCTGGATGGACTAATAATT 347916 33 100.0 33 ................................. AATAAGGACAGTGGGACGATTTGGTGTTTACTG 347850 33 100.0 36 ................................. TACCCGAAGCCAGTGCTCATCCTCCCCCAGCTTCTG 347781 33 100.0 33 ................................. CCATTATTATTTTACCACAAAACAATGCCTAAA 347715 33 100.0 35 ................................. CCTGGCCGCCAGCCCTGGGGAGGGCCTTGCCCTCA 347647 33 100.0 34 ................................. TATCCAACTAAAATCCAGTCATCTGCCACCAAGT 347580 33 100.0 35 ................................. TCTCAATGACTTGGCCATCAACGAGTCGGTCACTT 347512 33 100.0 34 ................................. CACGCTGTCCCAGTAGTAGTGGAGGACGCCGGTT 347445 33 100.0 36 ................................. CTGCGAAAGGTTTTTCTCGCTCTCAATCCAGCCCCC 347376 33 100.0 36 ................................. TCCGCAGCATTTTGGCCTGGGAGTGGTACGACGACC 347307 33 100.0 35 ................................. GCTGGCAGGATGGGATAGATAAGAAGGTGAACATC 347239 33 100.0 34 ................................. ACGACGGTATTCTTATCCTCCACATCCACATGTC 347172 33 100.0 36 ................................. CAATTCATAGGCTTCTTGGCCAGTACTCTGCCACCG 347103 33 100.0 35 ................................. AACCTGGACTATGATCTGGTGGCCGCCTTGGACCG 347035 33 100.0 35 ................................. TTCCACCTACTCAGATGACCAGCAGGGTGCAACGG 346967 33 100.0 35 ................................. ACCGAGGCCATCGCCTTAATGCGCCGGCAGAAAAA 346899 33 100.0 35 ................................. ATCTCGGTGCTGGACATGCCAAAGACCTGGTTTAG 346831 33 100.0 34 ................................. ATCCAATGTCCCGGTATTACATTCTGCCAGATAC 346764 33 100.0 33 ................................. TTGATTGGGAACAAGGAATTAACCGCGATCTTA 346698 33 100.0 34 ................................. AGCTCAAAGGACCAGTTGAGGCCGTACCAGATGA 346631 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 73 33 100.0 34 GTCGCCCTCCGTGAGGAGGGCGTGGATTGAAAT # Left flank : GAGCAGCAAAGGGACAGATGTGGACCGGATACAGCTGTGCGCCCAAGCAATGGCTTTAGAGGAGATGTTGGTCTGTGGAATCACCCATGGCTATCTTTACTATGGGGAAACCCGCCGCAGGGAGCAGGTGGAGTTTACCTTGGAACTGCGCAACCAAGTGGAGTCGCTGGCCAAGGAGATGCAAGGATATGCACAGCGGGGATACACCCCCAAAGGGAGGTTGCAAAAGCATTGCAATGCCTGTTCTTTAAAAGACGTCTGTCTCCCCCAGCTGTCCCGAAGCCCCTCTGTTAGGGAGTATATCGAACAAAGGATGGAAGAACTTGTGTGATGTGCGAATCGGAAGCGGTCAGAGAACTCCTGAAGGGTTCGCACCAAATTGATGGAAAAAAGGAGGACACAAAGCGGAATTTTTTGGATTATATTCCATAAAAAGTAAAATCATACAAATGCAGCATATAAATGCTAAAATTAATAGAAATGTTTTGTGCAAAATTGCT # Right flank : ATAAAAGAGAAGCTGGGCATTCAGTATTACGGGCGTCGCCTTCCGCGAGGCAGTGTGGACGCTGCCTAGAAATCCGATTGGAAAGGGGAAGTTATGAAACACCTGCTCAATACCTTATATGTTTTGTCAGAGGATAGTTACCTTTCCCTCAATGGGGAGAACGTAGTGGTCTCCCAGGGGGAAAATCAATTGGGGCGGTTCCCCCTGCACACTTTAGAGAATATCCTTTGCTTCAGTTACAAAGGGGCAAGCCCTGCCCTGTTAGGTGCTTGTGTCAAACGGGGTATACATTTCTGCTTTTTTACCCCCAATGGACGGTTTTTAGCCCGGGTTTGCGGAGAGACATCGGGCAGTGTTCTCCTTCGCCAACAGCAATCCATCGCGTCTATGGACCCAGTGCAGACAGTGCGGTTTGCAAAAAATCTGCTGATGGGAAAAGTATACAATTCCAGATGGGTCTTAGAACGAGCGACAAGGGATCACCCCCAGCGGGTGCCAGT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCTCCGTGAGGAGGGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.60,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [45.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //