Array 1 1356859-1357792 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP008796.1 Thermodesulfobacterium commune DSM 2178 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ============================================ ================== 1356859 35 100.0 40 ................................... TAACCTTTACTTCAACTTTTACTTTTTCCTTTTCCTTTTT 1356934 35 100.0 41 ................................... TGATAGTCAAGGGGCTTCATGTCAATTGAAGCTACCAATGT 1357010 35 100.0 42 ................................... TTATTGTCCTACTTACTTCTTGTTGATTTTGTTCGTCCATAA 1357087 35 100.0 38 ................................... AAGGGGATTATAGAACTCAAAGTTTGAAGGATTGTATT 1357160 35 100.0 40 ................................... TCCTCTTTTTCTTCTCCTAATCTTACCTCACCTGTCCATT 1357235 35 100.0 39 ................................... CTATCACAAGGTATCCCATCATGCGGACAATGATCAATG 1357309 35 100.0 37 ................................... AAATCGACTGTTACCTCAACTTTTACTCTTTCCATCG 1357381 35 100.0 44 ................................... CCAACACTTCAAAGGCAGTGTTGCAATCAGTCTTCCCCTAAAAA 1357460 35 100.0 42 ................................... CACCTCCCCCTCTTTTTCTATTTTATTTATCTTCTCTTCCAA 1357537 35 100.0 44 ................................... CCATTGCCCCCATTCCAAACTCTTCCCACACACTCCCTCCCTGA 1357616 35 100.0 36 ................................... TATAATACCTAAACCTCATCCTTCATCTCCTCCTTC 1357687 35 100.0 36 ................................... ATGTCCTAGGTTTTCTCCCTTGGACGATTTGCCCAA 1357758 35 94.3 0 ...............................G..T | ========== ====== ====== ====== =================================== ============================================ ================== 13 35 99.6 40 GTAGAAACCTGCCCTACTTCAAAAGGGATTGCGAC # Left flank : AATTAAAAAGGTACTACAATTTTAGGCTTTTACAAGAAAAATCTAACTGAACTTAAAAATTTTGTCTTTTAAAGGGTTGTTTTATAAAAATTTTTATATATTATATAATTAATAAGTGGTTATTAGGTCTTTGACAAGAGAATAGGCTACGGGGCAGGGGTTGAAGTTAAGTTGTTAGTTTTTTAAGGAGATGGTATACCCTTTTCAAGGGTGTGTGTACATATATTTAGTAAATAAATGGATAATTTTTACCCCTCCCTACAAGCAAGATTTGATGCGACATAGAGAAGGGTATTTTTAGAGGTATTTTATTGAGTCTCATTTGCAATTAAATCTGCCCGAAAGTATCCTTGTAAGTTATTGATTTTATGTAGGAAATTTTTGTTATCCCAGGCTGTCAAGCATAGATTTCATCAGGGTTTCAAAGGGTCATTTTTAAAAATTTAGTTTTATACTAAACTTAAAAAAGTTAGATTTTATCAGGGTTTCAAGGGGTAAGA # Right flank : TGTTAAAGGCTTGTGTCTGGATAAACAACCGTCCTAAACAATGGACTTAGAGAATGCCGCCTGTGGTTCTTGCAATTTATTTAATTTAGGCTATGATTATTTTTTAAATTCCTTTAAAGGTGAGGTAAATGAGCACAGGTAAAATAGTTAATCTGGAAAACAAAAATAAAACTGCCGAAGACTTTAAACTTTCTCCTTTAGAGGAAATCACCCTCAAAACCACCAAAGAAATCGTCATCAAGTTTATCGAAATGGGACGCTGCTCCCCTGCTACCTTTGAAGAGGTTTTCACCCAGGTCTTTTCTGTTATCAAAAAAACCCTCACCAAATAGATGCAACTTTTAGCCATCCACGCAAGCCCAAGAAGTCAGGGCAATTCTGAAATTTTCCTTGATGCCTTCCTCTCTACCCTTAATCACCAAAAGATAAAAACCGAAAAGATAAAACTTACGGAACTTAAATTCTCCCCTTGTGTTGAATGCGGAGGTTGTGAAAAAGAC # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGAAACCTGCCCTACTTCAAAAGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.00,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 2 1461789-1463221 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP008796.1 Thermodesulfobacterium commune DSM 2178 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 1461789 30 100.0 38 .............................. CTCCTGTTTTTCCTGAGTATTCAGCTCTTATTGACCCG 1461857 30 100.0 39 .............................. TCAAGAGACTTGTAATAATTGTCCATCTGGATATGTTTA 1461926 30 100.0 36 .............................. GTGCTTGGTATGATGTTTTAGAGGTTTATGTAGATG 1461992 30 100.0 38 .............................. TAAGCAATTTTCTCAACATCTTTTATCCCCACCTCCGT 1462060 30 100.0 36 .............................. TTTCCAGCCTTTTCCCATCTATTTCGTCCTCAAAAA 1462126 30 100.0 36 .............................. CAAACTACTACCTTCTCCCCCAAATAATTAAAATAA 1462192 30 100.0 37 .............................. GAAGAAGAGGTAGCTCAAAAATTAGGTATTAAAAAAT 1462259 30 100.0 38 .............................. GTTCAATACGACACATAGAAGGCTTGTGGGAACTATAC 1462327 30 100.0 37 .............................. AGGAAAAAGAAGGATAATTCTTCGGTGGAAAAATAAC 1462394 30 100.0 36 .............................. TGAATTTGTAATGAAAAGATGAAGCGAGATGTTTTT 1462460 30 100.0 37 .............................. TGAGAACTGGAAATTATCAGTATTCAGTGCCTGAGAT 1462527 30 100.0 37 .............................. ATCTATCTGTTTAGGTATCTGAAATTCAATCATTCCG 1462594 30 100.0 37 .............................. TTTACCATGAAGGACCCCACTGATCATTCGGGAAATC 1462661 30 96.7 37 ................T............. ACCGCTCCCTTTCCTATCCGAGCCAACTCAAAAGAGA 1462728 30 96.7 36 ................T............. CTTTAAACTTCCCAATCCAAGGCACAGGAGCCGAAT 1462794 30 96.7 37 ................T............. ACTGTTTAAATTTCTTGCTTGCCTCTTGACTATATTG 1462861 30 96.7 37 ................T............. CCCTCAGGTAATCTTGTCCTGAGAACAAAGTGTATGG 1462928 30 96.7 35 ................T............. GTTTCACCGTTCAATTCTTGCATATATCTAATTAG 1462993 30 96.7 37 ................T............. GAAGATAGCCCAGACCCAGAGCATCCACAGTGCATAA 1463060 30 96.7 36 ................T............. ATGAGTCTCTTGACATTTTCTAAAAATATGTTAAAA 1463126 30 96.7 36 ................T............. ATATTAATATACACAACACGTTGCCCTGCTTTATCA 1463192 30 96.7 0 ................T............. | ========== ====== ====== ====== ============================== ======================================= ================== 22 30 98.7 37 GTTTTGAGCCTACCTACAAGGAATTGAAAC # Left flank : TTAGAGTTGTATAAGATTGAAAAACACTTAATGGGAGACGAAGAATATAAACCTTTTATAAGTGAATGGTAGGCAATGTATGTGATTTTAGTGTATGATATTAATGAAAAAAGAGTGCAAAAAGTGTTAAAGATTTGTAGAAAATTTTTGCATTGGGTACAAAATTCAGTTTTTGAAGGAGAGATTACAGAAGCAAAACTTTTCAAGCTAAAACAGCAGCTTAACCATGTTATAGATCCTGAAGAAGATTCGGTGGTTATATATACGTTTTTAACTGAGAAGTATTCAAGAAGGGAGATTTTAGGAAAGAACAAAGCGGTTACGGATGTGATTATATAAAATTTCTGTCGATCTTAGATAATGTAAAAGTTCTTGGGGATAGACGAAGGGCAAGATATTAGATTAAATCTTGACAAGCTGGATTTTGGAGTGGTAATTTTTTAAAAAAAGGAATTAGTTCTTTGACAATTGAATAATAGATTTTATAATATTTTAAATGG # Right flank : CATTACTCCTTATTTGCCCTTACATGCTTACAGAAGGCTCGATAATTGAAGGAGACTTTTGGCCTGAGCCTGTTGAAGTCAAAAGAGTAGAAGAGGTAGAGGATGGATACCGCATCGTTGGTTCAACGATAATTTCCCGTCAGCATGTAGATGATTTCATCGCCTTTTCAGACCTTCCAAAGATAAAAACTAAAGAATTCTTGTTAAGTTTTACTCAACCGGGCTCTGAAGCCTTTTTAGCCCTTGAGGCTCTTCGGTTTAGGTATGCTTCCCTTTTTGACCCCTTGCTTGCTGTAAACGTCTCCAAAGTCGAGCCCCTACCCTTTCAGATTGAAGCTGTCTATGGCTATATCCTAAAGCTTCCTCATATAAGGTTTCTTCTTGCTGACGACCCCGGGGCAGGAAAGACTATCATGGCTGGTCTTGTGATAAAAGAGTTAAAGCTTAGAGGGCTTGCTAGGCGAATCCTCATCGTTGTCCCAGGTCATCTAAAAGATCAA # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGAGCCTACCTACAAGGAATTGAAAC # Alternate repeat : GTTTTGAGCCTACCTATAAGGAATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [83.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : NA //