Array 1 104830-104556 **** Predicted by CRISPRDetect 2.4 ***
>NZ_VFFJ01000010.1 Salmonella enterica subsp. enterica serovar Berlin strain 14V1042 NODE_10_length_166847_cov_18.5722, whole genome shotgun sequence Array_Orientation: Reverse
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ============================= ================================ ==================
104829 29 100.0 32 ............................. TCGTGGCGTAGCACGTCTTATTTTTGAATCCT
104768 29 100.0 32 ............................. AGTATCCACTTAAACACAATCATTATTCGCTA
104707 29 100.0 32 ............................. GCATTGATTTAGCGTTGGGTGTGGATTATTTG
104646 29 100.0 32 ............................. GAAGTGGAGAGTCGCTGGAAAATGCTCATAAA
104585 29 96.6 0 ............T................ | A [104558]
========== ====== ====== ====== ============================= ================================ ==================
5 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Left flank : GTGCTCGCTGCCGGTGAAATTGAGCCGCCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCCTTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGTCGCCTTGCCGTCTGGTTACTGGAGATTCGGGCCGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGTTGCGGGAATGCCGTCATGGCCTGGGCGACCAACACGGAGTCGGGATTTGAGTTCCAGACATGGGGTGAAAACCGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT
# Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGTAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT
# Questionable array : NO Score: 6.02
# Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37
# Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37
# Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41
# AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: R [0,5.92 Confidence: HIGH]
# Array family : I-E [Matched known repeat from this family],
//
Array 2 121991-120965 **** Predicted by CRISPRDetect 2.4 ***
>NZ_VFFJ01000010.1 Salmonella enterica subsp. enterica serovar Berlin strain 14V1042 NODE_10_length_166847_cov_18.5722, whole genome shotgun sequence Array_Orientation: Reverse
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ============================= ================================ ==================
121990 29 100.0 32 ............................. CGTGAGTCTCAATATAATTTGGGTTCCGGGGC
121929 29 100.0 32 ............................. GTTCCGAACCCTAGAAGCGCTATAAGATTGCA
121868 29 100.0 32 ............................. AATCCGTTCTCGCTAGAACCGACAAAGCGTAA
121807 29 100.0 32 ............................. CCGCTTTTTCTATGCGGTTATGGGGGACATAA
121746 29 100.0 32 ............................. CCAAGAACAAGAACAGGAGCAAGAACAGGAAC
121685 29 100.0 32 ............................. GCGGGACCGGAGGCGCAGGTGGTGGCGCTTTA
121624 29 100.0 32 ............................. GGCTTACTTGGGGGGCAAATCGGAGCGTACAA
121563 29 100.0 32 ............................. TGTGCTTCTTTGTACTGCAGACCGTTAACCAC
121502 29 100.0 32 ............................. TCCGGTAGTGGGTATCCCGCCGCCTTATCCAT
121441 29 96.6 0 ............................C - Deletion [121413]
121412 22 75.9 32 -------...................... AGTCAATGACTTCCAAAGATGCCCGGGCGGTT
121358 29 100.0 32 ............................. AAATCGCGCGGCGATCGACTCAAGGCGGCGAC
121297 29 100.0 32 ............................. GCGCGTCAGCGTGGATTAACTCAACAGCGCTC
121236 29 96.6 32 ............T................ CTGGGTCTTGGTTTCGACGTTGTAGCGGATTG
121175 29 96.6 32 ......T...................... CGTTCATCGGCAGCGTCACGCAATATGAAGAA
121114 29 100.0 32 ............................. AAGGTTAGCGTTGTCATTGATCTGGTCGGCAA
121053 29 96.6 32 ............T................ AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG
120992 28 89.7 0 ............T...........G-... |
========== ====== ====== ====== ============================= ================================ ==================
18 29 97.3 30 GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACAGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATATGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT
# Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC
# Questionable array : NO Score: 5.95
# Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:-0.16, 8:1, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37
# Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37
# Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41
# AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: R [0,5.92 Confidence: HIGH]
# Array family : I-E [Matched known repeat from this family],
//