Array 1 140092-139149 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKJL01000002.1 Gardnerella vaginalis strain UMB0032A .16933_8_50.2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 140091 28 100.0 33 ............................ CCAAATACAAAAGATAGAATTTACAAATATTGT 140030 28 100.0 33 ............................ CAATTCTATCAAAATAATCGCCGTCATGAATAC 139969 28 100.0 33 ............................ TCCTTACACACAATACACGCAAGTTTTTGACTA 139908 28 100.0 33 ............................ TTGTAAACTCCTGTGAAAAGCTTTTCTCTTGTC 139847 28 100.0 33 ............................ CGTAGGATAAATAGGAAAAAATAAAAAGGTACT 139786 28 100.0 33 ............................ CATTTACACCGTCTACAAGATATGGATTATATA 139725 28 100.0 33 ............................ CTTAATACCTTCTAAGTTTCCAGAAGATGAGTA 139664 28 100.0 33 ............................ TTAGCTTATAAGGCATTAAATGACAAAATCAAT 139603 28 100.0 33 ............................ TCATAAAAAGGCGCATTATAAAAGAGAATCGCG 139542 28 100.0 33 ............................ TGTGAGCGGTTTCGTCAGGATATCCGCAAGCGT 139481 28 100.0 33 ............................ TGATTTTAGACGCGAGTTTATTCGACACATGAA 139420 28 100.0 33 ............................ CGAAAGCGGAGTATCACCTGACGCTAGAAACAA 139359 28 100.0 33 ............................ TATACACCTGATTTTGATGAGTTTCACAGTATC 139298 28 100.0 33 ............................ TCGCCAACCGTTATTTCCAATTGATAGCCAATG 139237 28 100.0 33 ............................ TCAGTGTCACCACCCGTAGGTTTCACCTTATCA 139176 28 96.4 0 ..............C............. | ========== ====== ====== ====== ============================ ================================= ================== 16 28 99.8 33 GTATTTCCCGCATAGGCGGGGGTGATCC # Left flank : TTTATTCCTAATGAAATTATTGAGCTAACTGGTATTACATCCAACATGCTTGAATCTTATGGTGTCGGATTAGATTTAGCATTAAGAGAATTTATTGATTTTGTGGGAAAATTACCATTATTAGGATATAACGTATCGTTTGATATTGGATTTTTTAATTCGGCTTTATTCTCATTAGATGAGAAACTCAGCAGTGCTTTTTCTGTTAATAAAGTTATTGATATTTCACGTTTTGTGAAGCATGATAGGAGGTTTTTGAAAAATTATCAGTTGAAGACTGTTCTGCATGAGTATAACATTTCTGAGTCAGTTCCTCATAGAGCTCTCCTGGATGCTAGGCTAACGGCGCGTCTTGTTCTTAATTTGACAGAATTGTTAAAGTTTCTTTCATAAGGTTATAATTTTGAAGGATTGTGTGCAACAATGGGTTAATTTTGAAAAGTAAATAGTTTTTACTATTTAGTCTTGGAAAAATAGCTATTTTATTGGGATTTTTAAGT # Right flank : TAAGCACCCTAAAAACGCGGCGGGTATAACCACGTCTTTTCCGCATACGCTGGATAAAACCTACATGTGCGGCAAGTGTGGTTGTAGTAGTCTAGTGGTGGATATGATAGCGGACGCACAAGTGGAGGTTAAAACGCTACGCGGCGTATTATATCGCGCGCGTTGATTGTTTTTATAATAGGGTAGGCAAATAAAAACTTGCCTACCCCTTATTTTTACTGTTGATTGTTTGACTCTGCTTTAGCTGCTTTACTAACCGCCTCTTGCAGCGCTTGCCATGATGACGGCAGCTCTACAGGGCGATGTGGGCGGCGCGCAGCCCAATCACGTATAATGTCATAATCCCACGCAGGCTTTGCTGTTAGCGCACCAACTGAGTGCGTTGGTAGTGGGATCAGACCGCGGAGGCTACTCGCATCTTGACCATCTAAGGCTGCACGCCTAGATCGCACCAAATACTGGCGCATAGACTCGTAGCCGACGCCAAGAAGACGCGCAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTTCCCGCATAGGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.10,-9.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 1 136695-137244 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKJL01000003.1 Gardnerella vaginalis strain UMB0032A .16933_8_50.3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 136695 36 100.0 28 .................................... TAATAGCGCTTATGGCGATACCGCGTAT 136759 36 100.0 28 .................................... CGAACAGTCTGATACTGATTCCCAGCAA 136823 36 100.0 29 .................................... ATACTTCACCTCTTATCAGCTTTTCCATT 136888 36 100.0 28 .................................... CAATCCATTGAGTTGCTTTATTATCTTC 136952 36 100.0 29 .................................... CTCAAGCATCGGTGGAATCATATTTCTAT 137017 36 100.0 28 .................................... CGTGTATCGTAGGCTTGCTGACGAATTA 137081 36 100.0 28 .................................... TTGTTGAGCGTCCTGTTTATGATGCTGG 137145 36 100.0 28 .................................... TAGCGTCTGCTGCTGACCGTGGCTTGTT 137209 36 97.2 0 .G.................................. | ========== ====== ====== ====== ==================================== ============================= ================== 9 36 99.7 28 CAATTATATCAAGAATGGTAGAAGCTAATTTTCAAC # Left flank : TAATGGTTCTGGACATACAATTCCTAGCGCTTTATCTGATTTAGCTCAATCATATGGTATTTATGTGGAAAAAGACATGGAAGACTTTCGAGTACCACAATTTGTAAGGAGTGAATTATGAAAGTCGATGAGGACAGTGGTGGCATGTGGTGTTTAGTAATGTTTGATTTACCAGTGAAAACAAAAGTAGAGCGTCACGCTGCAACTGTATTTCGCAATATGCTGCTTGATATGGGGTATGCAATGGTACAATTTTCTGTGTATGTCCGTTATAGCCCCACTCAAACAGGAAATAGAACTTCAGTAAAAATAATTAAGGATAATCTTCCTCCACGTGGATCAATACGCATTTTACATGTCAGTGATCATCAATGGTCATCTGCACAACGTTATTACAATGCCAGGCAAGAAAAGAAAGAGGAGGCTCCCGATATTGCTATGCTTTTTTAATCATAAAATGTCTTATAATGGTTGGAATTCTACCATTCTTGATGATATAC # Right flank : CCAATAAATAAAAACGGGGAAGCTGGAAAGCTTCCCCTGCAGTAATAATCATTAAAACTGCTGAGCAATCAAACTGGATAACAAGTCCAGTCTTATTGAAAATTAGCACTTCTAATATATCATCTTTAAGAAATAAAAAACAAGTGGACTTTTTTAAGTTTTGTTAAAATATTTGAAAAATTAACATATCAATGTGATTGATGGATAGTGTAGTTGAAAATGTTATTACTTTTCGAATGCATGTGTTTTCTAAAAACTGCATTCGTGAAATGTATGTATGTAGGTTTTATGTAAACAGCATCCATATATTCATAATGGGAACGTTACTAAGGTAGCATTCCCATTATGTTTTTTATAATATGCGACTTATATGCGATTTACCAAATGTGTACGCGCTCGCTTGGAGCAAGCCACATCTCGTCGCCGTCTTTAACGTCGAAAGCATCGTAGAACAAGTCAACGTTGCGTGCAATGCCATTAGTGCGGCATTCTGCAGGGGA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAATTATATCAAGAATGGTAGAAGCTAATTTTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.30,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA //