Array 1 552998-552673 **** Predicted by CRISPRDetect 2.4 *** >NZ_SGWQ01000001.1 Herbihabitans rhizosphaerae strain DSM 101727 Ga0310478_101, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ================================================ ================== 552997 26 81.5 47 ...GT......-..A..........T. GAGTTTGCCGAAGTCCTCGGGGCCGAAGTCGAATTCGAGGCCGCAAC T [552983] 552923 27 100.0 47 ........................... CAACGTGACTGAATCTAGCTTCGGCGCTGGTCAGAGCGACCGCAATG 552849 27 96.3 47 ...............A........... GGCTGCAACGCGAACCTCAAGAACATCGGCGGCGAGGTACCGCAATG 552775 27 100.0 48 ........................... AGACCTGCTGCACATCACCTCGGACACCGGACAGTGCTCACCGCAATG 552700 27 74.1 0 ...T....C.....G.G....A.GC.. | T [552687] ========== ====== ====== ====== =========================== ================================================ ================== 5 27 90.4 48 GGGACCGGTCGGAGCGACCGGTGAGAG # Left flank : TCCACGAGCCGAGTGGCGGCGAGTCGTACACGCCGTTGCGAATGCGCACCTCGACATCGCTGGACGGGTTGGTGCCCAACAGGATCTGTTGCGCGCGAGCCAGCGAGGCGATCGGTTTCGCCGGAGTGCGCCCGTCATTGCCGTCGGAACCGCCGGGTGCCATGTACAGCGTGAACACGGCGTCCGGAGCGGCCGAGGGTGCCGCCTGAGCGGACACCACCGTGGCCAGCACGCCGGCCGCGGCCAGCGCCACTCCACAGATCTGCGCACGTCGCGAGAACCGAGCCATGGTCGAGCACGTTAGCCACCCCAGCCGCTCCACGTGCGCGTTTCACAGAATCTGGCCCCACCGGCACCGCGAGCGCACCGGCGTAGAAGTGATCAGTGCGAGCGGCACTGAGGGTGTCCGCGTGCACGCCAGCCTCGTGGCGCGCAAATGGGGCTGGCTAGTGAGAGGCAGCCGCATCACCTCGGCGTGGGGCGCAGACGCCGGCCGCAAT # Right flank : CGGTGGCGTCGCGCAGGTCGATGTCGTGATAGCCGCACACGCCGCAATGGGATCCGGCCGGTTAGCCGGAGGCAGTGGCTCCTGTGCACTGCGGACGGCATCTACATCTGGGGGCCGCAATAGAGTCTGGCTGACTGAGCTGAAGGGCAGGTGCGGGCTCGATCGATCGTGATCGCGTCCAGGTCGCCGCGATGGAGGGTGGCGGGATTGGCCAGCGTCAGCACGGACACGGCCTTCGCGTTGGCGCGCGGTGAGGCACCGCAATGGAGTCCAGCCGGTTTGGCCGAAGGCAGAACTCCGGCAGGAAGTTGTTCATCGCGAACAGCGGGCCGCAATGGAGCTGGCGAGGAATCGCCAGGGTGAGACGGCGACATTGACCTGCTGCGGCTGCCGCAATGGGGACCGGTCTAGGTGACCGGTGAGAGCCGGTAGGCAGATCTTGACCGGCCCGCCTTGGCGGTCCCCGCCGCAATGGGGACCGGTTCGGGAACCGGTTGTCA # Questionable array : NO Score: 2.50 # Score Detail : 1:0, 2:0, 3:0, 4:0.52, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGGACCGGTCGGAGCGACCGGTGAGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.00,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 2 554909-554569 **** Predicted by CRISPRDetect 2.4 *** >NZ_SGWQ01000001.1 Herbihabitans rhizosphaerae strain DSM 101727 Ga0310478_101, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 554908 37 100.0 40 ..................................... GCTCGAGGCGGGCACGGAGTACTTCTACCGGTTCCGCGCC 554831 37 100.0 39 ..................................... CCGGTAGGTCAGGACGGAGCAGGCGAACGCGGCGCCGTC 554755 37 100.0 38 ..................................... TACGGAGACACCCCATACTACCGAACACGCTGGATGGG 554680 37 100.0 38 ..................................... CTCGCCTCCGGGTTGCGCTTGGCGACCTCCTCCCAGCT 554605 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 5 37 100.0 39 GTCAAAGAGTTGGTGCCGCAATGGGGACCGGTGAGAG # Left flank : CCCGCCGGCCGAGCAGCCAACCGGAGATGACGACAGGCCGCAATGGGGACCGGCGTTTTCGGCCGGTGAGAGCTGCCCGTCCAGTGGTTGCACTGCACCCTCGGGTGGATCGCCGCCGCAATGGGGACCGGCGTTTTCGGCCGGTGAGAGGCGTTGCACAGCAACGCACGGTCGGGCATCGCCGCGAGGCCGCAATGGGGACCGGCGTTTTCGGCCGGTGAGAGCTGCCCGTCCAGTGGTTGCACTGCACCCTCGGGTGGATCGCCGCCGCAATGGGGACCGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGGCGTTTTCGGCCGGTGAGAGACCGGCACGCCGAAAAAGACACCGGAGCAGAAGAAATTGCCGCAATGGGGACCGGCGTTTTCGGCCGGTGAGAGTTCACCAAGGGTGCGCCGTCAGTG # Right flank : GGCTCGCGAGAAGTATACCGGTTGACCTGCGGAAACGGGCGCGGTTGCGAGCGGTTCGGTGAAGAGGGTCGTGCGGGGCTCGGTTGGCGGCTCGGAAGGGCGCGGTTTCGGGGGCTGACCTGCGTGCGAGCGGTCCCTGGGGTTTGAGGCTGCACCGGACCGCTCGCAGTGGGCGCGGCGGCGGTCAGCCCTTGTTGCCCCAGGTTCGGAGGCGGGTCTCACCGGCGGGGAGCTTGCAGCGGTCGGGATCGCCCGCGTAGCGCAGCGCTTCTTCGGGGGTGGGCTTCCAGGGCCACATCATCCACACGCGCGTGTGCTTTCCGCCGCCGTACACCGATTCGAGCGTGTTCTCGATGAACCGGTTGTGGTGGCCAGCGCACTCTTTCGCGCGCGCCTTGTACTTCTCGTAGCAGTACTGGTCGCACACATCGTCGCGGTAGTACTGGTCAGGGCCGGTTCGGATGAAGGTGCTGTATTCGAACGAGTTCAGCGAACTGCGG # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAAAGAGTTGGTGCCGCAATGGGGACCGGTGAGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.80,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [35.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA // Array 3 555185-555668 **** Predicted by CRISPRDetect 2.4 *** >NZ_SGWQ01000001.1 Herbihabitans rhizosphaerae strain DSM 101727 Ga0310478_101, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 555185 36 100.0 38 .................................... CTCGCGGCGATGCCCGACCGTGCGTTGCTGTGCAACGC 555259 36 100.0 42 .................................... GGCGATCCACCCGAGGGTGCAGTGCAACCACTGGACGGGCAG 555337 36 100.0 37 .................................... CTGTCGTCATCTCCGGTTGGCTGCTCGGCCGGCGGGT 555410 36 100.0 41 .................................... ACGCGGTGCACCCGCACCTGGTCACCGAGTTAGCCGACGTG 555487 36 100.0 36 .................................... ATTCCCAGCGCGTCGCGCGCGATCCGGACGAGGCAC 555559 36 83.3 38 T...........A..CG........T........C. CCGGCGGTTTCGTCGTCCAACGTGCCGACGCGGATGTC 555633 36 86.1 0 ............A.CC................T.A. | ========== ====== ====== ====== ==================================== ========================================== ================== 7 36 95.6 39 CTCTCACCGGCCGAAAACGCCGGTCCCCATTGCGGC # Left flank : TCCAGCGTGTTCGGTAGTATGGGGTGTCTCCGTACTCTCACCGGTCCCCATTGCGGCACCAACTCTTTGACGACGGCGCCGCGTTCGCCTGCTCCGTCCTGACCTACCGGCTCTCACCGGTCCCCATTGCGGCACCAACTCTTTGACGGCGCGGAACCGGTAGAAGTACTCCGTGCCCGCCTCGAGCCTCTCACCGGTCCCCATTGCGGCACCAACTCTTTGACCACTGACGGCGCACCCTTGGTGAACTCTCACCGGCCGAAAACGCCGGTCCCCATTGCGGCAATTTCTTCTGCTCCGGTGTCTTTTTCGGCGTGCCGGTCTCTCACCGGCCGAAAACGCCGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGGTCCCCATTGCGGCGGCGATCCACCCGAGGGTGCAGTGCAACCACTGGACGGGCAG # Right flank : CGTCAGGAGGAATCGCATCCACGCGTACACCGTGATCAACTGTCAGGTTCCCGGCTCACCGCAACCGGACCATCGGCGGCCGAGACTCGTCACCCGCGTCAACGACGGATACTGGGAGCCTCGGCCAGCGAGCCAGGGCGGCACACGCCTACACATCCGCCACAAACCGGCAAACGCGCCATGTCTGGCGAAACTTGGCGTAAGCTGGCGGCCATGGGAGTTTCGGCACTGTCAGTATCACAAGTACAAGTGACCGCCACGGCAGATGGGCGCGTGACGATTCCCGCCACGCTGCGGAAGGCCGCAGGGATCGAGGCTGGGCAACGACTCGTTGTCTACGTGGAGGACGGGCGGGTCGTGCTGGAGCAGTGGGAGCACCTGCTGGACCGCGTCCAGAGCAGGGTCGTGGCGGCAACCGGCGCGCACACCGGCCTGGCATCCGAGGAGCTGATCGCCGAACGGCGAGCCGAGGCCAAACGTGAGGACGCGAGCGCCAACGC # Questionable array : NO Score: 3.04 # Score Detail : 1:0, 2:0, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTCACCGGCCGAAAACGCCGGTCCCCATTGCGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.70,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 4 569269-567601 **** Predicted by CRISPRDetect 2.4 *** >NZ_SGWQ01000001.1 Herbihabitans rhizosphaerae strain DSM 101727 Ga0310478_101, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 569268 36 91.7 39 ........CA.....................T.... CGACCCGGAAAGCGCGCTCGGTGAACTGGCCAACGATCT G [569266] 569192 36 100.0 41 .................................... TCGAGATCTCGGATGTACAGGTTCGGGTGCCGCTCACACGT 569115 36 100.0 35 .................................... GCGGGTTGCCGGAGGACGACCGTCACGTGGCGGCG 569044 36 97.2 39 ...............A.................... CAGTTCGCGGATCGTCTCGCCGAGCAGGAGCTGCGACCG 568969 36 100.0 38 .................................... AACCGTATTCCCATCATGCCAGTACGCCGTTTTGCTGT 568895 36 100.0 40 .................................... GCGTGCGACGCGTGCGCCCCGGCTCGGTACGGGATGACCT 568819 36 100.0 35 .................................... ACGGTGACGTTCACGCCGTCGGGCAACGTGTGGTT 568748 36 100.0 36 .................................... AACGGTGTGACTAACGGTGTGAGTAACGCGGGTAGT 568676 36 100.0 38 .................................... GGGTCCTTCTCCTCGGTTTCCAGGCCGAACGCCTTGGC 568602 36 100.0 37 .................................... CCCCAGACTCGCGCCGAAGTGGCGCGTGCACTGCTCG 568529 36 100.0 37 .................................... CTGAACGCGTTCAGGCGCTGATCCACCAGGCGAACCA 568456 36 100.0 40 .................................... CCCGGATGTCGGGGCGGTAGATGCGCGAACTCTTGCGGTT 568380 36 100.0 41 .................................... CCCGCAACTCGGCGTCGGCCGCGCGCCGCAGCCTGGTGCTC 568303 36 100.0 37 .................................... GTGCGCATGGGTGCCCGCCTCGTCCAGGGGCGTGGAC 568230 36 100.0 35 .................................... ACCGTGGTGTTCAGCTTGATGCCGAGCGGCAGTTT 568159 36 100.0 40 .................................... TGAGCCCGGCGGCCGTGGTGGCGGACGAAGTCCATTGGAT 568083 36 100.0 38 .................................... GAAGAGACCGAGCGGCATGCTGGTGCTCAGGACGAGAT 568009 36 100.0 39 .................................... GGCAGTCTCCTTCGGCCGCCGCGCTCTCGACGGAGACCG 567934 36 100.0 38 .................................... CGGTCCGGGCGATCCTGGCGGGCGACTCGGCGCTGATC 567860 36 100.0 39 .................................... ACCGATGTGTAACGGGGGAGCATGGTTGTGCGAGTACAT 567785 36 100.0 38 .................................... CAGTTCGACCACACCGACAAGGCCGTGCTGGTCGTACG 567711 36 100.0 39 .................................... CGCGCACGCACTCGGCGCTGGCGTTGGTCACAATTCCTC 567636 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 23 36 99.5 38 GCCGCAATGGAGCTGGCGGGGAATCGCCAGGGTGAG # Left flank : ACCCGCTCGCCGATGTCCTCAGGCAGCGACCCCGGATAGATCAACTCGGGCAACCTGAGGCCCTTCACGACGGTCCTCGCCTGCCCCGGATGCGCCTGCCGGTACCGAACCGCCGCCCCTCGTCCGGCTCGAGCACTCTGGCCCGACTCGCCACGGCTTTGAGCCGCCCCCACCACACGCGCACCGAAGGCGCCGCGACAACGTTGCGCAACCACTGCGACGCCCACCCGTAGCCCGACGCGACCACCACGCCGCCGGGTTCGCGCAGCAGCACTTCGAGCACGACGTACCGCCGCGCCTCGCTCACTCGTCCGACGTGCTCCACCATCACCAGCCGCCGCCGAACAGAAACCCGCCCGGTACAACGGAATCGGCACCCGTGCCAACCAGCGCGGAATCCTCCGCATGATCACGACCATAACCGCGCCAGCCCTGGCGTGCCGCCAATGCGATCGCCCAGCGGGCGGCCGTCGCCGTTCTGCCCGCTCCCGTGCGATCAC # Right flank : GGCTCGCGGATTCTGGGGGCCTTGACCTGCGGAAACGCGGCGGGTTGCGAGCGGTCGCTTCGAGGGCGGGTGGTTCAGTGCGTGTGTACCTCCTCTGAGGTCGGAAATCGTGCGCTGACCTGCGTGCGAGTGGTCCCCGGGGTTTGAGGTGGTACCTGACCGCTCGCATGCGTCAGACGATCTGTGGGCCGGCGCCGGGCAACGTGCGTGGGCGGCCGAGGGTGCGGATGGCGGCCGGGCTGGCTGTGGGGCCGAGGTCAATCTGTACGACGCTGTCGGCGGCGAGGTTCATGATCTCGGTGACATTTGACTCCAACTCTGCCCGCTCGGCAAGGGACAGGTCGCACACGAATACAGAGTACTGCAATCTCACACCGTGATCCTCCATGACCGTGCATATCCGACGTAGCCGCTGAGGATCGGCGATATCGTAGGCGATGAGGTATCTGCGTCGCGCCATTGTGTCACCGCGTTGTCATTGGCTTGTATTCAGGTAGCTC # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGCAATGGAGCTGGCGGGGAATCGCCAGGGTGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.10,-11.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-25.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.74 Confidence: LOW] # Array family : NA //