Array 1 153454-152757 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ089435.1 Klebsiella pneumoniae strain MGH97 aeurp-supercont1.2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 153453 29 100.0 32 ............................. GTCATATCATGGACGTCAAGCGGCATTGACTT 153392 29 100.0 32 ............................. GAGGCAATCAGGATTACATTTACCGGACATAC 153331 29 100.0 32 ............................. CGTGGCGGGTTGACCAGATCGGCGATCTGCCC 153270 29 100.0 32 ............................. ATTCCTGCGGGACCTGATAATAAAAAGGTCAG 153209 29 100.0 32 ............................. TACGATAACGCGCAGCAAACAGGCTATATCAC 153148 29 96.6 32 ............................C GGTCCAGTTTGGTTCTTTAGGGCGAACTACCT 153087 29 100.0 32 ............................. AAGGTACTCCATGTTTTTCATAAGCGGTATCA 153026 29 100.0 32 ............................. TTTTTTGGTACAGGTGGGAATACAGGCAACCA 152965 29 100.0 32 ............................. GCGGGAGTGCGAACCGCCGTCCCCGTTATTGT 152904 29 100.0 32 ............................. TAACAGGGCCATTTTCCCGGGTTGCCAGACGA 152843 29 96.6 29 .........................G... GGGTTCACTTGGGTGAAACTGAACTAACT 152785 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================ ================== 12 29 97.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCCAGCGGGGATAAACCGAACCGGTAAATTATTAAATGTTGGTGCGGCCTGTGTTCCCCGCGCCAGCGGGGATAAACCGCATGGCTTACGATCAGCTGGCTGAGCGATTTGGTGTTCCCCACGCCAGCGGGGATAAACCGTGCCGGACGTTGTACCTGTGAGTTAATTCTTCGTGTTCCCCGCGCCAGCGGGGATAAACCGAACTGATAGCACATCGCCTCAAGCTCTGTTGTGTGTTCCCCGCGCCAGCGGGGATAAACCGGCAATAACGCCCTTCGGCATCACGCCTAACAAGTGTTCCCCGCGCCAGCGGGGATAAACCGCCTGGCGGGGCGGTCTTCTTTTCTGGCCGCCGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGATAAACCGATTTAAAATCTCCATTCAGTTGTGTTCGACAA # Right flank : GTCCACTAACGTTATCGATCCTGAGGGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGTGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTGGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATTC # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 154087-153631 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ089435.1 Klebsiella pneumoniae strain MGH97 aeurp-supercont1.2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 154086 29 100.0 32 ............................. CCTCAATATTGGGATTTACTGATTGAATTGCG 154025 29 100.0 32 ............................. GCACACCTCAAAATACTGTTAATATATACAGT 153964 29 100.0 32 ............................. AACCGGTAAATTATTAAATGTTGGTGCGGCCT 153903 29 100.0 32 ............................. CATGGCTTACGATCAGCTGGCTGAGCGATTTG 153842 29 96.6 32 .........A................... TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 153781 29 100.0 32 ............................. AACTGATAGCACATCGCCTCAAGCTCTGTTGT 153720 29 100.0 32 ............................. GCAATAACGCCCTTCGGCATCACGCCTAACAA 153659 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGGCCGTCTGTGGCTGACGCAGCGCGTTTTGCGACAGCAGGGGGCCATTCGGATGCCACAATCTGCCCGATTATTGATTGAATCCGTCTACGGGGAAGATATCGCTATTTCCGATGGTTTAGCCAAAGCCGAGCAAGCGCAGTTGGCAAAATATTACTGCGATCGCGCGTTTGCTCACCAAATGCTCCTGAACTTCAAGCCGGGATATAGCCCCGATAGCAGTGATTTCCTGGCTGACAAGCTCTCTACTCGCCTGGCAGAAGAGTCGATCACGCTGTGGCTGGCGAAAAACGTCGATGGACAGTTGCTGCCTTATGCCTGCGGCGCGCATCCGTGGGAAATGAGCATGCTGCGGGTGCGGGAAAGCTGGTGGCGTAAACACAAAGCTGAATTCACGCTCCTGGCTGAAAAGCCGCTACAGCAGTGGTGTGTACAACAGCATCAAAACCCGGATTTCGCCGTGGTGATTATTGTTACAGACTCGCCGGATTGCGGTTATT # Right flank : CCTGGCGGGGCGGTCTTCTTTTCTGGCCGCCGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGATAAACCGATTTAAAATCTCCATTCAGTTGTGTTCGACAAGTGTTCCCCGCGCCAGCGGGGATAAACCGGTCATATCATGGACGTCAAGCGGCATTGACTTGTGTTCCCCGCGCCAGCGGGGATAAACCGGAGGCAATCAGGATTACATTTACCGGACATACGTGTTCCCCGCGCCAGCGGGGATAAACCGCGTGGCGGGTTGACCAGATCGGCGATCTGCCCGTGTTCCCCGCGCCAGCGGGGATAAACCGATTCCTGCGGGACCTGATAATAAAAAGGTCAGGTGTTCCCCGCGCCAGCGGGGATAAACCGTACGATAACGCGCAGCAAACAGGCTATATCACGTGTTCCCCGCGCCAGCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [15.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //