Array 1 297038-295482 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLUD01000012.1 Pseudomonas aeruginosa strain WH-SGI-V-07277 WH-SGI-V-07277_contig2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 297037 29 100.0 32 ............................. GGATTGCTTCGCCCATCTGCCGGGCCTTGCGA 296976 29 100.0 32 ............................. ACCGGATGCAGTCTTAATCCCTTTTTGCGTCG 296915 29 96.6 33 ............................A GTTATGCTGGTGCTGTCATAGATCATGTCGAAC 296853 29 100.0 32 ............................. CTCTACGACGAGAAGTTTGGCCTGTCGCTACT 296792 29 100.0 32 ............................. TCTATGGGAGGTGGGGAGTGAACGAGACCGTA 296731 29 100.0 32 ............................. TTGAGGGCAAACGACGTTTTGCCCATCGAGGG 296670 29 100.0 32 ............................. TAACGGCCCGCCCCTTCACGCGACCTCCCGCG 296609 29 100.0 32 ............................. CCAAGAAAGAACGCCGAAAGGCCGTTAGGAAA 296548 29 100.0 32 ............................. ACGTTGAGTACGTCGGCGCCGTACTTTTCGTC 296487 29 100.0 32 ............................. TCGGCCATCACTGGCAAGGTGCGCGAAGGCGT 296426 29 100.0 32 ............................. GCGCTTCACGGAGACGGCCTGCTGTTCCCTGC 296365 29 100.0 32 ............................. TTCAGCAGGGCGTCAGGGATGGCATCGTGTCC 296304 29 100.0 32 ............................. GCTACTGTCGAAGCCGGCACCACTCTGGACGC 296243 29 100.0 32 ............................. GCCGGATTCCGCTGCCGGGCTACATCATCCCG 296182 29 100.0 33 ............................. CGGGGCATGACTTCAACCCACCCCCAGCCCTCC 296120 29 100.0 32 ............................. TCGCACTTCCAGCCATGGCTGGACAAAGCGGC 296059 29 100.0 32 ............................. GCAGTCAAGGCTGCCGGCGGCCAGTCCGCCCT 295998 29 100.0 32 ............................. GCCAGCAGGGATGCCAGCACGCAGCCAGTCGC 295937 29 100.0 32 ............................. CAGTGACGGCAGCAGACGCGGCGATGCTGGAT 295876 29 100.0 32 ............................. TCGGTAGACGCACAGATGGTCGAGCAACTTCG 295815 29 100.0 32 ............................. GCGCAGGGCAAAGCCAAGGTCACCGCCGGCAC 295754 29 96.6 32 ...........A................. TTCGAGGTCAGCGGCTTCGGCCCCGGCGAGCA 295693 29 96.6 32 ...........A................. GTCGCCAGGCCCACGTCGGCGGATCACCAACA 295632 29 96.6 32 ...........A................. ATGTAGCTGTTACGCGGTCCCGCGGTGCTGAG 295571 29 96.6 32 ...........A................. GTGATGGAGCGGACCGCCCCGAGCACCGCAGA 295510 29 93.1 0 ........T..A................. | ========== ====== ====== ====== ============================= ================================= ================== 26 29 99.1 32 GTGTTCCCCACGTGCGTGGGGATGAACCG # Left flank : TGACCCGCATCATTCCCACCATCGAAGAGGTACTGGCCGCCGGCGGCGTCGAACCTCCCAGCGCACCGCCCGAGTCGGTGCCGCCAGCCATTCCCAACCCGGAGGGAATCGGCGACCTCGGGCACAGGACGCAAGGGTGAGCTTCCTGGCCGTAGTGGTGGAAAACGTCCCGCCGCGCTTGCGCGGACGTCTGGCAATCTGGCTGCTGGAAGTCCGCGCGGGCGTCTATATCGGCGATGTATCGCGGCGTACCCGGGAAATGATCTGGCAGCAGCTGAGCGAGGGCTACGAGGAGGGCAACGTGGTAATGGCCTGGGCCGCCGCCAACGAATCCGGCTACGAGTTCCAGACCCTGGGCGTTAACCGTCGACATCCAGTGTTGTTCGACGGGCTGCAATTGGTGGCATTCCAGCCTCTGGATCGGACCACGGAATAGAGGATGAGGCGGTAGATTTTTCGAGGTGTTTTTTCTTCTTTAAAAACAATTCTGTACGGTAAGT # Right flank : TGGAAGTACGCTCGCGCAGCGAGGATGCGATATATGCACGGGGCGAGCCGTTCACTTGAAAAGCCGACATTCCTGGCTGTCCTGTATTTCCCCTTTGGCATGGATAGAGCAGCCCCATAGGGCGAACGACGCCACCGGCGTCATTCGCCATGGCCGGGTCAACCGGAACGTCGAGCGGCTACCAGGCGCTGCTGCAGGCGCGTCAGGAAGGCCACTTCGAAGGCGGTCTTCTGCATCGGTGTGGGCAGGCTGTCGCGGCCGAAGGCGAAGGCGGTCCAGAGCTGGCCTTCGATCTGGTCGGCAAGCCAGTTCTCGGCCTGGCGGACGCCCTTGTCGATGGCGGGCTGGGCGGGAACCGGCCAGAGCAGGGATAGACCGGGTTGCCGGTCGGCGGGGGGAATCTCGACCATCAGGTCCTTGTAGCGTTCGATGATTGCGTCGACGTGGGTCTTTTCCTTTTCATCCTTCGTCATGCTGGGTACTCCGTTTCTGAGAGTCAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGTGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGTGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 307337-306210 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLUD01000012.1 Pseudomonas aeruginosa strain WH-SGI-V-07277 WH-SGI-V-07277_contig2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 307336 29 96.6 32 ............................A GCAGGATTTGGAGTCGGAGCGTTTACCTACAT 307275 29 100.0 32 ............................. GTGAACGATGCGAATCGGGCGGGGGTTTGGTC 307214 29 100.0 32 ............................. GCTTGGTAGATGCCTGGAACAAGTCGGTCAGC 307153 29 100.0 32 ............................. CGCGCTGTCCTCGGCCTGGACTGGACCATCGA 307092 29 100.0 32 ............................. TGGGCGAACGACGGCAGCGTCACCCAGGCGCA 307031 29 100.0 32 ............................. ACAGGGACGTTCTCCGCGAGCTGGCCATCGAC 306970 29 100.0 32 ............................. GCAGAGCGGATTGCTGCCCGCTTTGTCGGCAC 306909 29 100.0 32 ............................. GGGGTGGTAGCACCGGACTCGCGGATCTTGAA 306848 29 100.0 32 ............................. GCGTACATGACTGAGGGAGAGTCCACGGACCT 306787 29 100.0 32 ............................. TCATATAGCTTGTATTTTTCCTTGCTATGAGA 306726 29 100.0 32 ............................. AAAAACGACGGCATTCACTACGCGCGCCAGGC 306665 29 100.0 32 ............................. GCGTTCATTTCCCAGGACGTGGACCAGCTGCG 306604 29 100.0 32 ............................. GCCCCAAAAAGCGTTGGCGTCATCGGCTGGCT 306543 29 100.0 32 ............................. TTCATGAACGGCAGAACGTTGAGCGCCGATTT 306482 29 100.0 32 ............................. GTTGTTCTAGAGTCCGTTCAGGAGATGCTTCT 306421 29 100.0 32 ............................. AGGTATTCCTTGCCCTTGGCCAGGAGCACGCC 306360 29 100.0 32 ............................. TCATCGATCGTGGCGGCTGCACTGGCTGCCTG 306299 29 89.7 32 ..............C..........G.T. GTATCGACATCGATGGTGACCAGGCTGGTCCG 306238 28 79.3 0 A..........A..C.....-..A....T | C [306229] ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.2 32 GTGTTCCCCACGGGTGTGGGGATGAACCG # Left flank : GGCATCGTTGTACAGGGCGACGAATTCCGCGCCCCAGAACAGCACGATCTGCGCCTTGGCCGGCAGCAGCGTGGCCATCGTCGTCTTCAGGCTCGCCGACCAGGCGTCCGGCGGGCCGAGGGGCGAACCGGCCGCGTCGAGGCTGAGCAACAGTTTCCCGACCGCTCCTCCGTTGGCCAGGAAGGCCGGTGGATGGTCGAGGGTGTTCGGGTCCGGTTCGATGGTGAAAGGCTGTGCCATGTCTGCGGAGTCTTGCTCGGTTCCGGTTGAGGTGGTGGGTTGCATGGAATATAGGAGGGCGGTGGGTGCGCTTGCGTTCAATCAGCTTGGGGGACCGCGGGATCCCGATGCGGGTAGGTTTCGAATGGTCCCGAGGGAGCTGCCGGATTAGGCTGTGGGATGAGTACGGCCCTCATTTCCAGGAGCGGCGCGAGGGCCGCTTGGCCCGGTGGAATTTTGCTGTTGTTTTTCTTTTTTTAAAACAATGGGATACGGTAAGG # Right flank : GTCTACGCTCCTGCGGTTCGCCCCACCGCGCGGTATTTCCCATGGTGGGGCGAACCGCGCGGCACTACGACCAGTGGCGTAATCACCAGTGTCAGCCGCCAGTTGCCGGAGACGCGGATCGCCCACCGTCCGGCAAGATCCTCTTTCAGGGCATGGAGTTTCCAACCAACCTGGTTCACGTCGCTGGGGATGCAGGCTTCGCTCAGCACGAATAACTGACGGCGCAGGCATTGGGCGGGGGCTGCCTGGATACCTTGCCCTTACCGGTCTCGAAGAAGGCTTCCAGCCCCCTGTGGCGGAAGGAAATAGATTGTGAACAGGCGGCAAGTGAAGGTTGTTAGTGAGTTAGCGGAATGTCCGACGTTCGCTGTTGCACCATGGAGTTCCTGCTAATTTGGACAGGGGTGGTCGGTCCGGTCCATATCCCTCCTGCGCTCCTTCGCTTGCTAAACGGGGGGAGCAGGCGCATCCCTCGCTGGCTGCTCCTTGACGAGCGTCAT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGGGTGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //