Array 1 46619-46260 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP034691.1 Halorubrum sp. BOL3-1 plasmid p117, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================================================================================================================================================= ================== 46618 30 100.0 35 .............................. TACTCATGTGCCGTCTGGAATCGGAACGCGACCGG 46553 30 100.0 35 .............................. ACCCACCGCCGCCATATCGCATGGTTGTCCTGCGC 46488 30 100.0 169 .............................. AAGCGGCCATGAGTGTATGACAGTAGAAAAAGCTGCTCTGTTGAATAGCGGTGTTGGTTGAGGTGGTCAAAATCTGAGTCGGCTTGTTAGCACCCGAATCTGGCGATCTCAATATCGCTATCGTCTCACCGTGGCTTAGAGACCGCTATTCAACACAGCAGAAAAAGCC 46289 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================================================================================================================================================= ================== 4 30 100.0 80 GTTTCAGACGAACCCTTGTGGGGTTGAAGC # Left flank : GTCCCGGTAGCACGGCTAACACGAGAGCTCGGCGTCGGCGTCCCAACAGTCACGGTGGGTCGCTTATCCTTCAATAGTGTCGTCATCAATAGGGACACCCGTCACCTTCCATTTGAGCCGCTGGTCGCCAGCTCGCGACCAGCCACACGGCCCGGGTATACTACCGCCTCGACGCCTGGTCTACAGCTATTCGGGGTCGCTCTACCAGCCGATCGGGCCGGCTCTACCCACCTGGAAAGCAGTAAGAAGCTCCGCTACCCGCTACCGTCGGCTGGGTATACCCGGTGTTAGGGTGAAAGACCGACCAGAATGCGGGGGATACCAAACATGTGACTCACCGCGACGGGTGCGATGTCGGCCGCCGTCACCCCCCAGCAGAAGGCAGCAGTTTCCATAGCGAGTCCGTCGACCCCCACGGGGAACGCGGGTCATTGAGGGTTGACGAAAACATTAATTCATGAACGGCTGCTAAAGTGCGTGTGTGCCCGAAATCGGGCATG # Right flank : TGGCGCGGCAGCCGCGCCAGCGACTTTTTACTCTTCAACGGTCTCTTTATTCACGGGAACGCCCGTCATCTTCCATTTGACCCGCTGGGCGAGGCCGGTACGGTCTAACTTCCGCTGGCGGCGCTCGATATACGTCTCGGCGTCGCGGAGCTTGTCGGGGAGGTCCTCGATCTTCTCCTCGACGCGGGACCGCTCGCGAAGTTGCTCCTCTAATGTCTCGATCCGAGAGCGTAACCGGTCCGTGTTCTCACGTGATTCAAGCACATTACGAATGTGTTCGCTTCGGGACACGCTGTGTTCTTCGGCCTCTTTTTCTAGCTCTTCTTTGAGGTCTTCTGGTAGCCGTAATGTGATTTGCTCCATATCCCAAACGAAACACGTCGTGATTCAAGAAGTTCAGTCAGATACACGGCAGACTAAGCACGGAGGCAAAAACTCCATTACTGAATGTGCGATTCTATTGAGAGAGACGAACATTCAAGACCGGTTCCCGTGTGTTT # Questionable array : NO Score: 2.85 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-3, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTGGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.00,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 2632-927 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP034693.1 Halorubrum sp. BOL3-1 plasmid p163, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 2631 31 100.0 36 ............................... CGTTGAGAGAGTCGCGGGGAGTTCGTCTCCGCGCTT 2564 31 100.0 36 ............................... CACCAACCCGCTCCAGGCAGAGGGCTTTGTCGAAGG 2497 31 100.0 36 ............................... AGGTTCGGGTTCGGGTTCTCCTGGCGGTTCTTGTCC 2430 31 100.0 35 ............................... TTCTGGAACGTGTCTCGGGCGTACCCGATTTTATC 2364 31 100.0 33 ............................... GTCTGATCGAGCGTCCCGGTGTCGCTGTCGCCG 2300 31 100.0 37 ............................... CTGTGCAGCCGCGACTTCCTGCCGATTCGCATTACGG 2232 31 100.0 36 ............................... GTGGGTCGTGCCCTATGACGACGGCGTGGAGAACGA 2165 31 100.0 37 ............................... CACATACCCATCCTTTGGGAAAGATAGGTAATAAATT 2097 31 100.0 36 ............................... TCTCAGGATGTCCCAGAGACCGATGCTTTATTAACT 2030 31 96.8 35 ....G.......................... TCGACCTCACACTGCCGGCAGAGCCCGCCCTGACA 1964 31 100.0 37 ............................... AGCCGCTTATCCAGCGCCGACGCCGTCGGCAGCGTCA 1896 31 100.0 36 ............................... TTGGGGGCGAACCCGTGTTTTGAGGTGTCGGTGACA 1829 31 100.0 36 ............................... AGTCTCACTATCGACGAGCTGCATGAACAAGCCCCG 1762 31 96.8 37 .........................C..... TGATGGTCGGCATCGGGGCCGCGGTGATGGTCGGCGG 1694 31 100.0 38 ............................... CCGGTCGTGTGTCGGAGTGGCGGCATCCCGTGATCACA 1625 31 100.0 35 ............................... AACGTCGTCACGGTGAGCAACGGCACGGAGATCGC 1559 31 100.0 34 ............................... CAATCCGACACCGTAGCCGGGGACGGGAGCGCGA 1494 31 100.0 35 ............................... GCAAGGACGAGCACGCCAACGAGCGCGATGACCGA 1428 31 100.0 34 ............................... CAGAGTGACACTGTAGCCGGGGACGGGAGCGCAA 1363 31 100.0 37 ............................... GACCAGGCCGAAGGCCCGGCGGACCGTTGGGAAACGC 1295 31 100.0 36 ............................... CGCCCGAGACAGTGGGGACACACCCACGTTGCCGTG 1228 31 100.0 36 ............................... GCGTGGGACCTCGATGTCGCCAATCAGGTCGTGACG 1161 31 96.8 37 .................C............. TTCCCCGAGCCGATCACGTCGGTAATCGGCGCGACGT 1093 31 100.0 36 ............................... TGTTACATTATCCTGAACATTGTCGCCGGAACAACA 1026 31 100.0 38 ............................... TACTCTTTTCCGGCGGTATGTCCAGCATCATACCACCC 957 31 93.5 0 .A............................G | ========== ====== ====== ====== =============================== ====================================== ================== 26 31 99.4 36 GGTTTGGATGTACCCGTTGTGGGTTTGAAAC # Left flank : ATCCCCGATCAGACACAACAAATGGACACCGTCAGTGGAGCGGCTATGACAGCTGAATCGCTGATTGACGATGACAGACCGGAAATAACCGTCTACGTCTCTCAGTCACCAGCCGAAGATCGGCTATTGAAGTCCTACTGCAGAGCAGACAGAACAAACAATATCCCCGAACAGATAGCGATTCGAGAGTGTCTACGCCATATTGCGTGTGACGTACCCCGGAACCGCAAAGAAAACCCAATTACCGACTGTGCCCATCAACTAGGCGACGGCCTCTATTTCCTTGGTTCGGCGATGGCGGCAAGTAGTGGCTTATACGGATGGAAGGGGCTTTCTAACGACAAATCCGAGTCTGATACCGTATCACACTGCTTCCTCTGATCGACAGTTCGGAGGCGATTTCAGTCGACCCCGTGGGGTTTCGGGGGAGATTGAGGGTCGACGGAAATGTTTTAGTGCGAACGGGCGGTAGAACTATCTGGCTGCCTGAATTGGGGTAG # Right flank : GCTGTGTTGAATCGCCATACTGCGGCAGGGTAGGTCGCTAAATCAAAGGCGTTGAAGCGGGAAGATTCGGTTGTCTATGACACAAATCTCCCGCTTCATCGGGGAAGTTGTCCCGGTTGCTCAAAGAGTTACTGGCGATGGAGGCGAATCCGCCGCCCCGGAAGGCGGCGGCGGATTCGCCGACTACGCACTCGTTTCCCTTCACTGTCTGCGGATTTACCTCGACACATCCTATCGGATGACGGTCGATTTGCTCAAAGAGATGCCGCAAATAATCGGGGATATCGGCCTTGACGCGGCCGATCTCCCCGCGCCATCTACGTTGTGTAAGGCGTTCGACCGGATCAATATGAGCGTTTGTCGAGTGCTGCTGCGCCAGTCGGCGCAGCTGCACGATCTCTCTGAACACGCCGCGATTGACGCCACATTCTACGAACGCTCAGCAGCGAGCCGCCACTACTGCCAGCGAATCAGCTACCGCGTTCAGAAGCTGAAAGTCA # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTTGGATGTACCCGTTGTGGGTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.61%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.10,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA //