Array 1 1482-479 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEPVK010000050.1 Klebsiella pneumoniae strain k41 NODE_50_length_7436_cov_69.951156, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1481 29 100.0 32 ............................. CAACCTCAATTCCTAATGGCTGTCTAAGGAAA 1420 29 100.0 32 ............................. CAGGGTTTGCCCTTTTGCACCGCGCAGCGGTC 1359 29 96.6 32 ............A................ AGCAACGTTTCCGGATTATATGGCTGGAACGT 1298 29 100.0 32 ............................. TGGTGCTCTCAACCGTCACCCGCTGGCTGGAA 1237 29 100.0 32 ............................. TGGTGTTGTCCACGGTCACCCGCTGGCTGGAA 1176 29 93.1 32 ............CA............... AGGTATTTGACCTCATCCAGAAAGGCACAGAC 1115 29 93.1 32 ............CA............... GCACCCTCACGGATACCTTTTGCACAGTGTTA 1054 29 89.7 32 ............CA..............C CTTAGAGAAGCAAAAACCCCACCGAGGCAGGG 993 29 100.0 32 ............................. TTACTTTTTGGCAGTTGGTAAAACACTTTTGC 932 29 93.1 32 ............CA............... CGAAAACGGCAACCTTCATAAAAACGTCTTTT 871 29 100.0 32 ............................. CCGAGATTGAGTAAAGCAAAGTAACGGCGGTG 810 29 93.1 32 ............CA............... CAGCGTCTGAACGGACGAAACATCCCTGTTGA 749 28 93.1 32 ..........-..C............... CGAGCGCTCTCCTGGTAAATCGGTAGCTCGGA 689 29 93.1 32 ............CA............... GCTGGATTTCCGTCAGTTGGTCAGCTGCTGCT 628 29 96.6 32 ..............A.............. TTCCGGACTCCTGTTTCCGGCAGTGGATTAAA 567 29 89.7 32 ............CA...........A... CACTACCAGATCCGAATGGACACCCGTAATGA 506 28 82.8 0 ............CAC........-....A | ========== ====== ====== ====== ============================= ================================ ================== 17 29 94.9 32 GTATTCCCCCCGTGTGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : ACATAAAAACCGCAATGGTGGGGCTTTTGTTATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCTTCAGGATAACCCACATTCTGTCAAATCTTGCAGGTTGCAATCAGCAAAGGCCTTACGTCGATAAATTCATGCCTTGAGCTGGTAAGGAAGTATGACGTTATAACTCTGCATTTCTGGTTGATTAAGGTAGGGCGGCATTCCTGCTTTAAAAACAATCAATAATTTTGAACGGTAGTCGTCTTGATCCCAACTGCTACCTGATGGACTAGGCACCTGCAAAGATCCAATTTATACTGGTTATATATACAGTGTGCGCCGGGAGACCGGTTAGAGATCAAGGGGTGAAAGTCCCCGACCATTGAAGGACCAGCAATCCACAAGGTCCCCGAGTCATGCGTTGCATACCGCGAGGTATGGGGCGAAGCGTTGACAGGGGTGTTGACAGGCCAGCCATT # Questionable array : NO Score: 5.54 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.53, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Alternate repeat : GTATTCCCCCCGCATGCGGGGGTTATCGG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 261963-263452 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEPVK010000005.1 Klebsiella pneumoniae strain k41 NODE_5_length_290702_cov_52.075561, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 261963 29 100.0 32 ............................. CATTTCATAGTGATTCGACTATTTAATTAACA 262024 29 100.0 32 ............................. AGTTCACGACAGGCAAAGTCTTTACGGTATGC 262085 29 100.0 32 ............................. TCTGCTGGTTACAGGAGAAAAAAATGATTGGT 262146 29 100.0 32 ............................. TTATTTCTAAACTAAGTTTTGTTTCATGCAGT 262207 29 100.0 32 ............................. TTTTTTTGACGAAGACGGCAACGAGTTAGAAG 262268 29 100.0 32 ............................. GTCTCTGCCAGTTTTACCTGCTCAGCGGATAA 262329 29 100.0 32 ............................. CTGACAGCTGGCGCTAACCCGTCGTTTATCGC 262390 29 100.0 32 ............................. CGTGAGCATCTGGGCATCTTCAGTGATAGCGT 262451 29 100.0 32 ............................. TATTTTTGAGATGATGGATTGTTGCACACCAG 262512 29 100.0 32 ............................. CGCTTCTCGGCTTCTCTGAATTTATCCGCCCA 262573 29 100.0 32 ............................. ATCCCGACCCGCTCCTCCAGAGCGAATACGAT 262634 29 100.0 32 ............................. TGCTTTATGGCAAATAAGAGAGGATATAACCA 262695 29 100.0 32 ............................. GCGTCCGCCTCCCAAATAGCCAGGCTGTTATT 262756 29 100.0 32 ............................. TAAATCCCAGCTGGTTTGACGTAGTGGCACTG 262817 29 100.0 32 ............................. CAATGAAGGCTTATAAGGGTGAAGAGAGCAGG 262878 29 100.0 32 ............................. CAGTCGGTAACGGCTGGGCGTGACCTCAAAGC 262939 29 100.0 32 ............................. GTGCCATTTTTATTTTGCTTAAAATAAATATC 263000 29 100.0 32 ............................. CCTATTGTGTTCAGTCGTAACAGCTGAATCAG 263061 29 100.0 32 ............................. GGCGCGGCGGAATAACCACTTTATGAGCAGGT 263122 29 100.0 32 ............................. GCGACCATGCCGTAGTCTTCAATGACGTAATC 263183 29 100.0 32 ............................. CCCCGTCGTCATTCGCGCATTCTGCGCACAGA 263244 29 96.6 32 .....A....................... TAACAGGGCCATTTTCCCGGGTTGCCAGACGA 263305 29 100.0 32 ............................. TCACCCTCGTAGCCGATACCACTTTCGCGCAG 263366 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 263424 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================ ================== 25 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCGTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : CGTCCACTAACGTTATCGATCCTGAGGGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTTAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTGGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGTACCATCTCATAGCCTGTCAATT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //