Array 1 818513-817260 **** Predicted by CRISPRDetect 2.4 *** >NC_008601.1 Francisella tularensis subsp. novicida U112, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================================================================================================================================================= ================== 818512 36 73.0 34 T...T...AA..AG.C.....AA.......-...... AATTATCAAAGCAAATGAAAAAGATTAGCTGTAA A [818503] 818441 37 83.8 169 ..........T.AG...........T...TG...... TTTAAAGTAGCTAGAAAATTCACTTTTAGACCTACTTATTTTTATTATTTGAATGCTTTGGTAGTATGTTGAGATCAACATTTTGCTGTAAAACTGTTTTCGTGATTATATTATTTGATACAATGTGTCCAACTAGAAACTTTTAGGAATAATTTACAAAATTAATTAA TG [818414] 818233 37 100.0 34 ..................................... ACAATGGCAAGCTTGATTACTTTTATAGTGTGAT 818162 37 100.0 36 ..................................... AAGGATTTAATACCTTAAAATTATCCAAATTTATAT 818089 37 100.0 36 ..................................... TGCCTAATCCTCAGCAGCAACACTTAATTCAAGAAT 818016 37 100.0 34 ..................................... TTACACATTCAGCTGGTTCTTTAGCATTATTAAC 817945 37 100.0 36 ..................................... AGTAATAGCCAATGCTTTTAAACTACTGATATATAC 817872 37 100.0 36 ..................................... GCAATGACAGAAAACAGCACAGATAATAAAAAACTA 817799 37 100.0 37 ..................................... CTATAGGGTTACCTATCTTTTGAGTGTTGGCAAATAA 817725 37 100.0 34 ..................................... GTAATGGGCAGGTTTTGTATGGTCATATAGGAGT 817654 37 100.0 34 ..................................... ACTATTTAAGATAACTCGACCAATATTTGACAAA 817583 37 100.0 36 ..................................... ATCTGGTGAAGATGTAATCGAAATTGATCCGCTTAA 817510 37 100.0 34 ..................................... CAGTCTTCGCAATGACACAACCACAAGCCGCATA 817439 37 100.0 35 ..................................... AAGAGATATCTTAACTTTTGGTTTTTGGTTTTACC 817367 37 100.0 34 ..................................... GCGAGTGATTAGCAGTTGATATATACCAATCTTG 817296 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================================================================================================================================================= ================== 16 37 97.3 44 GTTTCAGTTGCTGAATTATTTGGTAAACTACTGTTAG # Left flank : AACGACAATGAACACATTTGAGATTACAACGTCTAGTTGTTTCCCATGCCATCCATTTAAGTTGATGTTTCACTAAATTCTTAATCCAAAACGAAATATAATTTTGCTATAACTATTATAACAAATAATCATTAAACTAACTGTATAAAACTAATAAAAATAACTTTAAAAAAGATATTTTAAAGACCCTTTTAGCTTGGTTAGTTTGAGATTTTTATTTATACTTTATAAATACTGATAATCTCAATATTAGTTATGTTTACATTTTTGTTGTTAGCTATCGCGTTTATAGCAACCCTATATGCTTTATACTACTTTATTTTAGCTATTGTTAAGCTAATTGTAGCGATATATCATTTTAACTATTTTTTTTCTAAAAATGATTCAAAAAATTAATTAATTCATAAAATAAATTGCTTAAAGTCTATCAAAACTTTGTTTGTCTATTTCTGAAAGTAGTATTTAGATAAAATCTTATGAAAAATTATTTTTAAATGAGT # Right flank : AGCCAAAACAAACCTAGTGTTTGCAAGGCTTTGAGAGTTTTTTAAAATGGTATTTTTTCGCAAATACCCTAATTGTAAAAAAACGTAGACATTTTGCGAAAAAATATCTAAAATTATAAATGTACCAAATAATTAATGCTCTGTAATCATTTAAAAGTATTTTGAACGGACCTCTGTTTGACACGTCTGAATAACTAAAAAGCAAAAATTTGCCACCTAAGTGGCTTTTTTTGTTTGGCAATTAATATATCTTGTTCGCTTCTTAGCTCGATTACATCAAGATGGCTGAGAAATTTAATATGGAGATTTCTAAATATTTGCGAGATTTCCACCTTCAGTGGCAATTAGAGGTTTTACTATCAACGATCATTACAAAAGTTGTAATATTCACATTGTATACATTGATGATCCGATGCAGATGAGTCTGGCTTATTACCACTATCTAAAGTACTAAGAATATCGCTGATAGTTTTTATAAGTTTGTTGATTAACTCATCAGT # Questionable array : NO Score: 5.26 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:-0.85, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTTGCTGAATTATTTGGTAAACTACTGTTAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: R [matched GTTTCAGTTGCTGAATTATTTGGTAAACTACTGTTAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-19] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 1470755-1471379 **** Predicted by CRISPRDetect 2.4 *** >NC_008601.1 Francisella tularensis subsp. novicida U112, complete sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 1470755 35 91.7 29 .....T.....-.C...................... TTCAAGGTTCAATGCAAGCAATCAAACAA AA,A,T [1470758,1470761,1470765] 1470823 36 100.0 32 .................................... GTCCATTTATTTCCGTCTCTCTTGCCTTTTGA 1470891 36 100.0 29 .................................... AAAAAACTTTATATCATAAATGAAAGTTT 1470956 36 100.0 29 .................................... TTGTTATCAGTAAGCGTATCTACTAGGTA 1471021 36 100.0 29 .................................... CTCAACAAGATAGAATTACCTTTTAATCT 1471086 36 100.0 26 .................................... AAAAAAATGACCTTCATAAATCGCTA 1471148 36 100.0 27 .................................... CGGCTACTAATACAAAAGGCTCTAGAC 1471211 36 100.0 30 .................................... TGAATTATCTGAAGGCACAGGAATAGTAGC 1471277 36 100.0 31 .................................... TTTTAACAGTGGCCTTATTAAATGACTTCTC 1471344 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================ ================== 10 36 99.2 29 ATCTACAACAGTAGAAATTATTTAAAGTTCTTAGAC # Left flank : CTAATATCTATTAGCTTAACCTTCTCTTTTTTTTGTAGATCAAGAAATTGCTTTACTGATATTTTTTCTACTTTATTCATCTTAGTCTCCTTATTTTAACTTTATCTAATTTAGATTTTACTAATATAAACTTTAAATTTTTTAATTTTTATCACCGCAATAGATGCTGTACAAAGCCTCCAATATTTTTGTTACCGAAGGATCGTTGATACTGTAATATACATTTTGCGCCTCTTTCCTACATTTGACCAGACCATTATTTCTCAACACTGATAAATGCTGAGAAAATGCCGATTGGCTCAAACTAGAGTACTCTGCTAGCTCTCCTACTGTCATCTCTCTTCGGAGTAGCAAGCATAATATCAATAATCTCGACTCATGGGATATTGCTTTTAATAATGAAGAAGCTTTACTAGCATTATCTTTCATCTGCATTAAATCCATTTTTATAAGCCTATAAATTCTCAAGTAGTGATATATTAGAAAATTCTAATTTAGAA # Right flank : CCCGTTTTTGCCTAAATCAGCAAAAAAAGACCTAAAATCTATGATTTTTTTAGCATTTTGATATATAACAACAGTCATATTTTTAAATATCTCTAAGAACTTAGTAGTTATTTTAACATAAAGACTAAGGTTTGCAATTTTTAGTCTATAAAAACAACCTCTTGTTCTCTATGAATCGCATAACCATATTTTATCACATCTTTATCTGGAGCATTAAAGATTAAAACACTATCAGCATTTGTAAATAGTGGTACATAGTTATTTTCTATCTCAGCTAAAATCAAGTCTAACATTCTCTTGCTATATTTGAGCTCAAATACCGAATATTGTAAACGTACACCATAACTTTCTAGAAATTTGGCAAACTTTGCACGTACTTTATTATTACTAAAATCATAACTGACTATCAACATACACCCTCCTAGTTTCATAACAAAATATTGGATACTCTGCAATTTCTTTGCCTCGCATAAAGGCACGATAAAATTCTCTTACATATT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTACAACAGTAGAAATTATTTAAAGTTCTTAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //