Array 1 116-1525 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCCQ010000029.1 Flavobacterium psychrophilum strain 96206 L contig00029, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== ============================== ================== 116 46 69.6 29 TAAT.T....A.ACC...CGGGT....................... TTTTGTTTTCGTCAAATTCCCCATTTGTG 191 46 100.0 30 .............................................. ATTAATGCGCTAATTATCGAAGGTAGCACT 267 46 100.0 30 .............................................. AGGACGATTATAAATTTATGCTAAATATTA 343 46 100.0 30 .............................................. AGATATATCTAATACTAGAGCGTACGACAG 419 46 100.0 30 .............................................. AAAAACAATATCGAAAAACTGAAAGAGAAT 495 46 100.0 30 .............................................. ATTTAATGTAATTGTACCCGAACCAGCTCC 571 46 100.0 30 .............................................. TATATCCGTGTTTGAATACACATTGCCACC 647 46 100.0 29 .............................................. CGTTTTCGCACGTGAAATCAAAGTACTAT 722 46 100.0 30 .............................................. TTTTAAAAAATGGTTAAGTAGGAAAACTTA 798 46 100.0 30 .............................................. TCCAGTAAGCGAGATGTCGTATATCAAAGT 874 46 100.0 30 .............................................. AGCCAATGCCTTGTGTCCTGTTATGTGTTC 950 46 100.0 30 .............................................. TAATAAGTTGCTCGTTTCCGTTTATTCCGT 1026 46 100.0 30 .............................................. AGTAGGTAATGTATTCACAATAGACACATT 1102 46 100.0 29 .............................................. AAAACGAAATACATACAGCGCACGCATTC 1177 46 97.8 30 ............................C................. AGGCACTTCTTTAGACTTAAATAAGTCTTT 1253 46 100.0 29 .............................................. AGTAATAGATGGGGGGTTTGAATGCCGTA 1328 46 100.0 30 .............................................. TCATCATCTGATGAAAATTGCTGTTCAATA 1404 46 100.0 30 .............................................. AAGCAAAATAAAATAAAAGAAATATTTAGC 1480 46 100.0 0 .............................................. | ========== ====== ====== ====== ============================================== ============================== ================== 19 46 98.3 30 GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Left flank : CAAAATTGGGGTATTGTTTTAAATCAATTTAATCTTATATTTGACAAAAGGCTCAGATTATAAAATCCAAGCCTAACTTTTTAACTTACACACTTTGCGGGATAGTGTCATCAAAT # Right flank : CATACCGCGAGTTAATCGTTTGATATGTTGGTGGTTATATGCTTATTTTGAAATTAAAAAACAGTTCTGTTTGTGTGTTGATATTCTGGTAGGTCTAATATTTCTAAATCCTATTTTTCAAAAAAGTTCTAATTGTTGCGAAGGTTTGTCTGTTTCTACAGGTTTTTTTCCATAAAAAAGCTCCATCATACCAAATTGTTTATCGGTTATTTGCATTACTCCAATTTTGCCGTGTTCGGGCAAACTATTTCTTATTCTTTTGGTATGTACTTCGGCATTTTCTCTGCTGGCACAAAATCGTATATAGATCGAAAACTGAAACATAGAAAAACCATCGTCCAATAATTTCTTGCGAAATTCACTGGCAATTTTACGCTCTTTCCGCGTTTCGGTAGGTAAGTCAAAAAAAACTAATATCCACAAACTTCTATACTGGTTTAAACGGGTGTAATGTTCGTCATACATAAATAGGGTATAAAATTTTTCTTGCGGCTCCCGCA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.91%AT] # Reference repeat match prediction: F [matched GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.00,-0.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 375-891 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCCQ010000052.1 Flavobacterium psychrophilum strain 96206 L contig00052, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== =================================== ================== 375 34 100.0 35 .................................. ACTGAAAAAAGCACCATTTTCAATATCAGTCACAG 444 34 97.1 35 ....................A............. GCCTGCAAAAATACCCCTTCTAATAACAGTCACAG 513 34 94.1 35 ...............T....A............. CTCTGCAAAAGACCCTTTTCCGATAGTAGTCACAG 582 34 100.0 35 .................................. CTCTGCAAAAGCCTGATCTCCAATAGTAGTCACAG 651 34 100.0 35 .................................. ACTGAAAAAAGCACCATTTTCAATATCAGTCACAG 720 34 97.1 35 ....................A............. ATCTGCAAAAGCCTCTTCTCCAATAGTAGTCACAG 789 34 97.1 35 ....................A............. GCCTACAAAAGCATACCTTCCAATAGAAGTTGCAG 858 34 79.4 0 ..........A.....C.........TT.TTG.. | ========== ====== ====== ====== ================================== =================================== ================== 8 34 95.6 35 AATTAGGAATTGTAACTGATGTTAAACCAGAACA # Left flank : GTTTGTTTCTAAATGATTAGTTGTTTTGATTAACTGCCCTAATGTGTTGTAAAAATTCACTTTTTGTAATTGTAAGCCCTCTTGCAAGGCTATGTTTAAAATTTCTGAAACTGGGTTTGGGTATATTTTTAAAGCACTTTCTATTGCAAATGAATGATTAGAAAGTAAACCACCAGAAATAGGGCTGAAATTTCTCCAAACCGCGGCTGCCTGATAAGCGACTTGCGTACCAGTAGGAACATTTAAAGCACAGTTTGATTGAGTAATATTGCCGAAGACATTTGCATTAATAACTAAAGGGCTTGTAATATGGCAATTTACTGTCTTTAAACTTCTACAGCCTGCAAAAGCATCCTCTCCAATAGCAGTCACAGA # Right flank : ATGTTCAAAAGCAGATTCTCCAATAGCAGTCACGGCGTAGTTTTCCG # Questionable array : NO Score: 2.53 # Score Detail : 1:0, 2:0, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATTAGGAATTGTAACTGATGTTAAACCAGAACA # Alternate repeat : AATTAGGAATTGTAACTGATATTAAACCAGAACA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.59%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.80,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 1 1-248 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCCQ010000073.1 Flavobacterium psychrophilum strain 96206 L contig00073, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================================= ============================ ================== 1 41 100.0 28 ......................................... ATCTGCAAAAGCCTCATCTCCAATAGTA 70 41 100.0 28 ......................................... CCTGAGAAAAGCACCATGTTCAATATCA 139 41 97.6 28 ...........................A............. GCCAAAAAAAGCAAAATTTTCAATAGCA 208 41 82.9 0 .................A.....C.........TT.TTG.. | ========== ====== ====== ====== ========================================= ============================ ================== 4 41 95.1 28 GTCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACA # Left flank : | # Right flank : ATGTTCAAAAGCAGATTCTCCAATAGCAGTCACGGCGTAGTTTTCCGAATTATAAGCTACTGTTTCTGGTATTT # Questionable array : NO Score: 2.61 # Score Detail : 1:0, 2:0, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.85%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.20,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 317-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCCQ010000074.1 Flavobacterium psychrophilum strain 96206 L contig00074, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================================== =========================== ================== 316 41 97.6 27 -......................................... ATCTGCAAAAGCCTCATCTCCAATAGT 248 42 100.0 27 .......................................... CTCTGCAAAAGCCTCATCTCCAATAGC 179 42 97.6 27 ............................A............. GCCTGCAAAAATACCCCTTCTAATAAC 110 42 100.0 27 .......................................... ACTGAAAAAAGCACCATTTTCAATATC 41 41 95.2 0 ............................A............- | ========== ====== ====== ====== ========================================== =========================== ================== 5 42 98.1 27 AGTCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACA # Left flank : | # Right flank : C # Questionable array : NO Score: 2.54 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.13, 8:0.6, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.80,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 405-89 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCCQ010000071.1 Flavobacterium psychrophilum strain 96206 L contig00071, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================================== ============================= ================== 404 40 100.0 29 ........................................ ACCGGCAAAAGCACCTCGATTAATAGTAA 335 40 100.0 29 ........................................ ATTGAAAAAAGCCTCATCTCCAATAGAGG 266 40 97.5 29 ......................A................. GCCTCCAAAAACATAATTTCCAATAGAGG 197 40 87.5 29 .............G..G.....G.........T...G... ATCGGAAAAAGTATAATTTCCAATAGTAG 128 40 77.5 0 .......G.....G..G.....C.........TT.TTG.. | ========== ====== ====== ====== ======================================== ============================= ================== 5 40 92.5 29 TCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACA # Left flank : | # Right flank : AATGTTCAAAAGCAGATTCTCCAATAGCAGTCACGGCGTAGTTTTCCGAATTATAAGCTACTGTTTCTGGTATTTCTGCTGCTCCAGTA # Questionable array : NO Score: 2.60 # Score Detail : 1:0, 2:0, 3:0, 4:0.62, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.50%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.80,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 236-2 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCCQ010000094.1 Flavobacterium psychrophilum strain 96206 L contig00094, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ========================================== ================== 235 27 100.0 42 ........................... TTACTATTAATCGAGGTGCTTTTGCCGGTTGTTCTGGTTTAA 166 27 100.0 42 ........................... CTACTATTCGAGAGAATGCTTTTGCAAATTGTTCTGGTTTAA 97 27 100.0 42 ........................... CTTCTATTGGAGATTATGTTTTTGGAGGCTGTTCTGGTTTAA 28 27 92.6 0 ....T....................T. | ========== ====== ====== ====== =========================== ========================================== ================== 4 27 98.2 42 CATCAGTTACAATTCCTAATTCTGTGA # Left flank : | # Right flank : AC # Questionable array : NO Score: 2.77 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CATCAGTTACAATTCCTAATTCTGTGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-1.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 1-234 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCCQ010000095.1 Flavobacterium psychrophilum strain 96206 L contig00095, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ========================================== ================== 1 27 100.0 42 ........................... GATATTGAAAATGGTGCTTTTTTCAGTTGTTCTGGTTTAACA 70 27 100.0 42 ........................... ACTATTGGAGATGAGTCTTTTGCACGCTGTTCTGGTTTAACA 139 27 100.0 42 ........................... ACTATTGGAGATGAGGCTTTTGCAGATTGTTCTGGTTTAACA 208 27 100.0 0 ........................... | ========== ====== ====== ====== =========================== ========================================== ================== 4 27 100.0 42 TCAGTTACAATTCCTAATTCTGTGACT # Left flank : | # Right flank : | # Questionable array : NO Score: 2.66 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCAGTTACAATTCCTAATTCTGTGACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //