Array 1 7036-7724 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZHH01000020.1 Gilliamella apicola strain Choc5-1 Gilliamella_apicola_Choc5-1_contig116, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 7036 29 96.6 31 ............................T TTTTTACCATCAACAAAATTATCAGACTGAA 7096 29 96.6 31 ............................C ACATGACTTAGTTGCTGAACAAGCTGTGCTT 7156 29 100.0 31 ............................. GCAATTGCGATATACAACCCAGTAACGATAG 7216 29 96.6 31 ............................G CCTGTTATTTTCACAACAACATGATTAGAAT 7276 29 100.0 31 ............................. AATAGACCACATCCGCCAATTTTCTTCTTGG 7336 29 96.6 31 ............................T AGTACTATCAGCATAGCCAGTATCGTTAAAC 7396 29 100.0 31 ............................. GTTCGATCAAAATCTCATGAAGAAGAATTTT 7456 29 96.6 31 ............................T TGATGCCCATTTCCATTCTTTACTAATCATT 7516 29 100.0 31 ............................. AGGTCGTATAGCTTACCCCATACTTTTTCAT 7576 29 96.6 31 ............................T GATAGCCAATTTAAACGCTATGGCGATGTAT 7636 29 100.0 31 ............................. GACGTTTTTGTAATATTTTTAACACTTGTAA 7696 29 93.1 0 ...............A............C | ========== ====== ====== ====== ============================= =============================== ================== 12 29 97.7 31 GTTTACCGCCGCATAGGCGGTTTAGAAAA # Left flank : CCTGCTTATTATTTAATGGTGGTTGCATTAGTTGGATTAGTGACAGGCATAAAAATGAAAGAAACCGCCAATAAACCGCTTCGAGGCGCAACACCTGCCGCATCGGATCGCTCAGAAGCCAAAGAGATTTTATCGGATCACTTCGATTCAATAGAGCAAAAAGTGGAAGATATCCAACAACAGATCGATACCTTACAAAAACAGCGTCAAGATTTAGTGGATCAACATCCTAAATTAGATTGATCTTTTATTTTTTGGTTTTGTATGTTTTAAAACATACAAAACTAAAGTTTAATAAAATCAATACGCTACCTGAGTGTTTTTTAACGGTAAAATTAGCACATCATAAAAATAACCAAAACGCTGCCAACCCTTTTTTTTATTGATAAATAAAAATAAATAAAAACAAAGCATTATAGAATAGCTACAAAAAAGGGTTTTTGAAAACAGAAATCCTATTTGCCTTTTGCTAAACAAGGTTTATAGTATATCGGTTTCTA # Right flank : CATTGGTTATGCTTATATTATCCAGTGATTATTTCGCCAGATAGGTTTTGTTATAGTGTTTAGTTAGCTTGTTGTCTTAATTTATCTTCAATGGAATTTTTAACTTTAGCCAGATGTTTAATTCCATAACCAATGCTTTTATAACGTTTACCTTTACAGATTAGAGGCGCAAACAGATTCAATCGGACTTTCTTTAGCACGCTATAAATGGTCGTCAAACGACTGGTCATAAAACGTTTAGCCAATTCAGTGACAGTTATTTTTTCTTTATGATATAGGTGACATATCTCTTGTCTGTGATAAGGCGTTAGTTTTGTTTTTTTATGTATATTCATTACAGTAGTTTTTCAAATTACTGTAAACAACTAAGCGAATAAACTGGCTGATGAATTAGCAGATCGTTCCTAAGCTGGTGGCGATAAGAAAGAATCTAAATCTAAAGTAATGAGAAAAATTTCGTTTGAAATTGATGAAGTTCAGTATGAAGAATTAGAAGATAT # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTACCGCCGCATAGGCGGTTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACCGCCGCATAGGCGGCTTAGAAAT with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.70,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 64603-63794 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZHH01000111.1 Gilliamella apicola strain Choc5-1 Gilliamella_apicola_Choc5-1_contig86, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 64602 28 100.0 32 ............................ TTGCTGAGCCTGAGCTGGTGCCGGCGGTTTAG 64542 28 100.0 32 ............................ TGCCACTGTATTGCCGAATTCAACACTGCCGT 64482 28 100.0 32 ............................ AATCAATGCCGGCGCAATCATTGGCGTTAAAA 64422 28 100.0 32 ............................ TGACCCGCCAAGCACCCGACGCATGGTTTAAA 64362 28 100.0 32 ............................ ACAGCACACGCACTAGCTGAGTATTGCTTTAA 64302 28 100.0 32 ............................ TTACCATATTTAAGATCGTGCACTTGTAGCTC 64242 28 100.0 32 ............................ GTACTGGCGTTCCAGTATTTGAACTGTACCAA 64182 28 100.0 33 ............................ TCTGGTAATATTTGCAAATCATCATTACTGGCT 64121 28 100.0 32 ............................ TAAATAAAACGCTTCAAAACCACTATCAGGCT 64061 28 100.0 32 ............................ TTTTGGCGATTAATGTCGGCTATCGTTATAAA 64001 28 100.0 32 ............................ ATCAAAGCCGTAAATTGAGTGTGTATCAAAAT 63941 28 100.0 32 ............................ GTATTCTGAGCTGAATTTTTTTGCCGCTGTTC 63881 28 100.0 32 ............................ CAGCGCTTAGCTATTTCAGCATCTGAGTAGAT 63821 28 78.6 0 .....................ACCT.CC | ========== ====== ====== ====== ============================ ================================= ================== 14 28 98.5 32 GTTCACTGCCGTGTAGGCAGTTTAGAAA # Left flank : AACAAAGAACCAAGTACATACTGTTTAAAATCCCAACCATCGACAGCACCACGGACTTCGTCGGCAATTTTCCAAATTTGGCGTTGTAGTTGATCGCGTTGTTGCGTTCCTGTCATTGATTGGGCGTTATTGGAAGTCATATTTTCAAAATTCCTAAATAAAAAATAGGTGTTGCCTGATTAGAAAGTCACTGATTTTTACTTTCATATTAGCCATTTTATAGCTACCTGTTATAGGTGCTATAGCATAGCTGATTTGTTGTTATTTTTCCATCTGGAGCGTTTATTAAAAACTCAGCCAATGGGTATTTTGAACTTTAAAGTTGGGAAATATTAAGAAATAACAAAGCAACAAAATCTAAAAACAAAAACCCTTTTTTTAGCTATATTTTAAAAGTTAATAAAATCAATAAATTAAATTTATCTCTAAAAAAAGGGTTTTTAAAACCTAAATACCTATTTGCCTTTTTACATACTATATTGATAGTATATTAGCTTCTA # Right flank : TATAACAGATAAGCGCCCTATGGGCGTTAATTTTGTTTTTTATATTTATTACTGTAATTTTCTAAATTACTGTAAAAAATGCGAGGGATTTTGCCGTAATATTAAAAATCAATTTGATAAATAATATCTAATGTTTGCGCTAAGCTTGATGTCGCATCCAAATAAAGGTTGGGCATTAGTCTATAACGCAAAGTAAACGTCGCTAGTGAATCAAAAATACCTACGCCATATTTTAGTTGTAAGTGAGGCAATATATAGCCACTAACTACTACTTTGGAGTTGTTACCTGCACCTTGCGTATCAAGTGTTAGATTTTTGATGCCAAATACATTACCGATATCGCCAATATATTTGCCTGTTTTTGCTGTGCCAATACCAACTAGTAGTGCTGTCATCATATCACTATCACTTTGTTCAGCGTTATCAAGACTTTGGCCTCGAATTAAGTACGATAAGGCTTCTTGTTGTGACATGGCTGGATCTGAAAACACTTCAACTTT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGTAGTTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 6893-7280 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZHH01000034.1 Gilliamella apicola strain Choc5-1 Gilliamella_apicola_Choc5-1_contig16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 6893 28 100.0 32 ............................ ATTTGCTGTTCTGTTCACACGGCCAATAACCT 6953 28 100.0 32 ............................ CTGTAACATGAATATGATTATTATCTGTGTCA 7013 28 100.0 32 ............................ GCTTGAACGTGCCAGCTCGCCCACGTGTGTCT 7073 28 100.0 32 ............................ CGTAGGTACTTCCGTCGGGGGGCGCTCATTGC 7133 28 100.0 32 ............................ AGACTTAAATTTTACAATAATATCTTCTCCCA 7193 28 100.0 32 ............................ ATTTCAAAAAAGACTTTTCTACACACATTTTC 7253 28 78.6 0 .................TC...A.TTC. | ========== ====== ====== ====== ============================ ================================ ================== 7 28 96.9 32 CTTTAACGCCGTACAGGCGGTTTAGAAA # Left flank : CACGGAACCAAAGTCGAACCAGTTAAACTAATTAACATTCGTAGACTAAAAAGAAGATTACTGCTGTAAAAGACTTTACGTAAAGTCAAAATGAATGTTTGCACGGTGTATTGGGTTTTGATTGAGTTGAAATGATAGCCAGTAGGATACTATATTGTAGAGCTTTGGGAAAGCATTGTTTATTTTTTGAGTATAAAAGAATTTTAAAAAACAAATAAAATCAATTAATTAAAAAATTACTTTGGGGGGCCTGTGTTTTTTATTTTAAGCACTTTTTTCATTAAAAAACAACCTAAGCGCTACTCAAAAATAGGTTAGTAAAGATATTGATTTTATTTTAACGGGTTTGTTTTGACTTCAAAACCCTTAGAACCCTTTTTTCACCGTTAATTTAAAATAAAATAAAATCAACAGGTTGAAAAAATCTCAAAAAAAGGGTTTTCAAAACTGAAATTGTTGTTTATCTTTATACAGCAAGATTTATAGAATCTTAATTTCTA # Right flank : ATATAAAATTAACTCGATAATTATAAAAACATAATAATAAGAGATTATTTTATTTGTCTTATTCCTGTGTCAGAATGCACCGACAACAGAGTGAGGTCAGCATGCCAAACAGAAAAGTTTAGCGAGGCTATGCTTTGTTAGGAACACATTTGAACATCTGAGTAAAGCGAAGATGGTCTTGAAAAGGTAAGTATTATGGATGATACAAATAATATTGGGGGATTTTGCACAAAATCCCCTTATTCAGACGCTATCACAGTAGCAATTTTTTACACCAAATGAATAAGATGTCCGAAAATACTGCCCCAATCAACTCCATCCACCAAAACAAGAACTCAATATCAGGCAAAAAATTGTTAGGGAAAACATTGATTTTATTTAATTTTTTATTTTATTGTTTTTTCTAAAAAACCAAATATTTCAATCATTTAAAGGTTTTCATAAAACTTAATCGAAGTCACACCTAAATAATTTTTACCAAAAATTCCCCAAAAAAACTA # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTAACGCCGTACAGGCGGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-86.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 14085-13517 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZHH01000054.1 Gilliamella apicola strain Choc5-1 Gilliamella_apicola_Choc5-1_contig34, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 14084 28 96.4 32 ..............T............. CTTTTTTAATTTATTTTGTAATTCTGATAGTT 14024 28 96.4 32 ..............T............. AAGGTGAAGTTACTGCAGAAGCTATGCAAACA 13964 28 96.4 32 ..............T............. TTGTATGAATCCTTTATCGAAGGCGCTTGTGA 13904 28 100.0 32 ............................ GGCCCGCGTGGCGCGTCATGCACAAAATAGAC 13844 28 100.0 32 ............................ AACTCAAGATGCTGCGTCCCGGATCTGTACCC 13784 28 100.0 32 ............................ TATCGGGCGTACTAAAATATCCATTTTGCTTA 13724 28 100.0 32 ............................ AAGCGATACCTAGCGCAATTAGTGCGTTTTTC 13664 28 100.0 32 ............................ AGATTTGCGCGGTGAATTCATACGTGGCTGGG 13604 28 96.4 32 ........................A... AATAGGGCTTATCATGACAGGTATTGCTATAG 13544 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================ ================== 10 28 98.2 32 CTTCAATGCCGTATAGGCAGTTTAGAAA # Left flank : AAAGCAGATATACAGCAAAAATCATCGATAAGTGATTATGCTTTATTGATGCCTATCACAACAGTACCGGCAACGATAAAAGGCTATTTGCATTTGAGTCGTGTTAATCCTAAAGGTCAGAGTGCGTTAAGACGTGCCGAAAAAAGATTAACAGCACAAGGTAAATGGACACCTGAAGTGAAAAATAAAATGGTTGAAAAGTGGGGAAGCGTTCATTTGCAATACCCACATCTTCATTTGAATAGTAAAAGTACAGGTCAAAGATTTATTTTGTGGTTAAAACAAGAAAAATGCCCAGAGCCAGTGCAAGGCACATTTAATAGCTATGGATTAAGCCAAACAGCCACTGTTCCTGATTTTTAAATCATTAACCCTTTTTTTGGGGATAATTTTAACATATTGATTATTATTGATATTAAAATAGACTCAAAAAAAGGGTAAAAATTGGGAAAAGTGCAGTATGCTCTTTTACAATAAGGCACTATTGAGATAAAATTCTA # Right flank : TTGCTCAGATTTAAATAGCATCATTGTTGTAATTTCAATAATCATTAAGTCCCACAATATAACCCTTTCAATGTGGTTTAACCGTATTATAAAAGTGAATAAATCGCTTAAACTTTTGTTTTCTTTTTTGAATATTTGTTGATTATGCTAGATTTCAATGAAAGAGTGTATCGCTCTTTTGGGCTTTTTTAATCTTGAAACGGTATAGAATCCTGAATATTTTTTACAAAAATATAACCTAAAAAGTAAACAGTTCAACTTTAGCTAAATTTTTAATTCCATAACGGTTGGCCTTATAATATTTGCCCTGGTTAAGGGGGAGGGCAGCTTTAATCGGGCTTTTTTTAGCACGTTATAAATGGTCAAACAACTGATCATAAAACGTTTAGCTAAATTAGTGATGGTGAGTTTTGTTTATGATATCAGTGCCATATCTCTTGTCTGTGATATGGCGTTAGTTTGCTTTTTTATGGATATTTATTATCGTAGTGTCTTAAATT # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCAATGCCGTATAGGCAGTTTAGAAA # Alternate repeat : CTTCAATGCCGTATTGGCAGTTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: R [matched CTTCACTGCCGTATAGGCAGCTTAGAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.80,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 2797-2469 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZHH01000075.1 Gilliamella apicola strain Choc5-1 Gilliamella_apicola_Choc5-1_contig53, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2796 28 100.0 32 ............................ CCGATCAGGTAATAAAAACAGGAACAATTTCT 2736 28 100.0 32 ............................ ACAACGAGGCAGGGCAGTTAAACCACCTCTCA 2676 28 100.0 32 ............................ ACTTAACCGATGATTTAACTTCTTTTCCTTTT 2616 28 100.0 32 ............................ GCTATAACTCGTCCGTATACTTCTGGGTCATT 2556 28 100.0 32 ............................ TCTTTTGAGGGCTTTTTTTGAGGGATTTATTA 2496 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 6 28 100.0 32 GTTCACCGCTGCGTAAGCGGTTTAGAAA # Left flank : GTAAATGAAAGTGGAGAACCTGAACTGTTTGTTGCTCATGGAAAACAGTACATGATACCCAATAAAAATGGTGAAGTTATCCCGTCTAACAAGTTATCCCGAGGCTCAGCAGGCAGAACAATCATAAATAATATTACGCAAAATATCTCTTTCGGTGAAGGGCAAGACAATAAAGAAGCCGCTAACGAGACAGCTAGAATGCTGAAACAAGCACTAAGAAGTGTAATTCAAGAAGAACAAAGACCAGGAGGGCTGCTAAATCGGCGTTGATTTTATAGATGAATTTTCATATTTTCACCCAAAAAACTTGTCAGTAAAGGTATTGATTTTATTAATGTTTTTTTTGGCGTTTTTGGAGTTAAACTCAAAAACCCTTTTTTTAATCGCTTTTTTAATCCATTGAAAAATATAGATTAATTTCAGTGCTAGAAAAAAGGGTTATTTTGTGAAAATTGGTTAAATTTCTATTTAAAACAATAAGCTATGTTTGATATAATCTA # Right flank : GCTGTCCGCTCGAATCCCTCTTGCGCTCTTTTGTTCACCGCCGAATAGGCAGACATAAACCGCTTTCGGGCGGTTTTTTATTGCTCTTAGTTAATAAATTTCATACTATTTATCAAAAATTAAGGAGGTGGTATGAAAAGAATCTTGATAATTAGTTTAGTTAGTTTCGCTTTATTCGGCTGCGGTGATGATAAAGTTACTAAAGAGTATTGGATTGGGGATTGGCAGTGTACCGCTAATGATTATAAAAAACATAACGGTGACGTTAATGAAGATTTTGGTGATTCAGTGTCGTCGTCAGAAAAAATAATGACATTTAAAATATTAGATAATGAGCTTTATCAAATAAATAAAGATGGAACAAAAATCTTGATTGATCCAAATAAAATGGAAAATATCATAAATAAAGTTGTAGGAAGTACTAAGATTAACACAAAAAAAACAACAAAAATTGTTAATAGTGACACTTTCAAGTTAACAATGTTGACTGAAATAAACAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCGCTGCGTAAGCGGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.70,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 1 4080-3871 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZHH01000079.1 Gilliamella apicola strain Choc5-1 Gilliamella_apicola_Choc5-1_contig57, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 4079 29 96.6 31 ............................T GAACTTTCATGGTTCTGTGAGCTGAAATTTT 4019 29 96.6 31 ............................A GAGAAACTGGGAGGCTAAATTTGAATACATT 3959 29 100.0 31 ............................. AAAAAATTATCCCACGAAATGACGCCACCAA 3899 29 72.4 0 ...........AG.......T..TT.TCG | ========== ====== ====== ====== ============================= =============================== ================== 4 29 91.4 31 GATTACCGCCGCATAGGCGGCTTAGAAAC # Left flank : AGCTATAGAGTGGCTTGGTGGTGTGCATTCTCGAAGTGGGTTGTCTGATGAAGATTTATACAATTTGGCTTGGTTATATAAAGTAGCTGATAGAATGCGTCACCATATAGAGTTGGTAGAGCCTGCATTGCGTGCAATAGATTCACGTTTTACGGGTGCTTTTTACTCCATGGCTTATGATTACAAATATACGTTAAGGCAGGCTAGAAAAGTTATTGAACGGGAAACAGCGCATATAATTACAAGTCATCTTACTACAAACTGGAATAAAGTATTACCAATTATTCGACATAACTAACCCAAAAAACCAGTCAGGAAAGGCATTGATTTTATTAATGTTTTTTTGGGCGTTTTTGGAGTTAAACTCAAAAACCCTTTTTTTAATCGCTTTTTTAATCCATTGAAAAATATAGATTAATTTAAGTGCTAGAAAAAAGGGTTATTTTCGAAAAAATGGCTAAAATTTAGTTAAAACAAAAGGCTATGTTTGATATAATCTA # Right flank : ATTTAGCCATAAAACCCCGTCCTTTAGGGCTGGAAGGATGTCAATATCAATTATCTTCATAATGAAGACGACTTAAAGCTAACATATTGATTTTTAAGGTAGCCTAAAAGTCTAACTGTTCAGGTTTAATTTGTAGCGCTTCGGCAATTTTAATCCGTGTTGCTTTTCTTAACTTTTGGCTTTTTTCATATTGAGAATAAGCTGATTGGCTAATACCTATTTTATTCGCAACTTCAACTTGAGATAACTTTAAATATTCACGCCATGCTTGTGCAGGAGAATAGTTATTATCAAAAACCATGTTAACAACTTCGTTTGGTACACCTGTTTCAACATCGATTGTTTTATTCATTATTATTTTTATGATTAACCTCAATATAAACATTATATAAGTTCTAGCAAAAATATAAATAAAAAGGATTGATAACTAAAGTTGACAGTTTGGCGGTGTGAGATATAATAGTTTTAAATTAAAACAGGAATAAAGCATGATTACTGTA # Questionable array : NO Score: 5.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTACCGCCGCATAGGCGGCTTAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACCGCCGCATAGGCGGCTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.10,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //