Array 1 5726-4783 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJBSK010000047.1 Faecalicatena fissicatena strain MSK.15.247 OLHBJMGG_47, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 5725 33 100.0 33 ................................. GCATTTTTCGCTGTCCTGTTGCGTCCAGAATAT 5659 33 100.0 33 ................................. AACGGAGGCGATAGTGTTTCGGCAATCTAAACA 5593 33 100.0 35 ................................. CTGGCGGTCTTTCAACGCCTGCTGCCGTCTTTCAT 5525 33 100.0 34 ................................. TAATTGTCTAAATCAAGTTGAAAAGCGGCTCTGC 5458 33 100.0 4 ................................. TGGA Deletion [5422] 5421 33 81.8 34 .A.....TAA.C...A................. TATTAAAGTGAACCCTTCTTTAAATTCTTCTGAG A,C,GT [5402,5406,5410] 5350 33 100.0 34 ................................. CAGCCTGGAACGTATGTGATTGCCGAAGAAAAGA 5283 33 100.0 36 ................................. AGAATGTGACGTATACATTCCAAAACAGCACATCCC 5214 33 100.0 34 ................................. GACAGCGTTCAAGATCTTGGCTAACCGATAGACT 5147 33 100.0 33 ................................. AAAAATCAGGTGCATAAATAATTTTACTGGTTT 5081 33 100.0 33 ................................. CACTTGACGGCGAGCTGACCGACCAGGAAGGCA 5015 33 100.0 34 ................................. ATTTAATAGTTCAATCGGTGCATAAAACAGTTAT 4948 33 100.0 34 ................................. TGGAAACCAGGAGAAAAAACATTCAAAGTAAATA 4881 33 100.0 33 ................................. ATGAAATTTCTATTCTGAATACAGCAGAACCGA 4815 33 93.9 0 .........................A.T..... | ========== ====== ====== ====== ================================= ==================================== ================== 15 33 98.4 32 GTCACGTCCCGTAAGGGGCGTGTGAGTAGAAAT # Left flank : GACATTGAGAGCTATCCACCATATCTGCAAAAATAGGTGGTGAGATAAAATGATGGTTTTAATAAGTTATGATGTTAGTACTGTCAGTGCAGCAGGAAAAACCAGGTTAAGAAAAGTGGCGAAAGAATGTCAAAATCATGCACAACGAGTACAGAATTCTGTTTTTGAAGCTGATTTAGATTATTCCTCTTTTTTGAAATTAAAAGATAGTTTATTAAAATTAATTAATCCAGAAGAGGATAGTTTGCGATTTTATTATCTTGGGAACAACTGGAATAAGAAAATTGAACATATAGGTGCTGAGAAAACATATGATCCAGAAGGCGTAATTATTATTTGAAGGTAGCGAAGGTGTGATGATTCAAAAACCACTTGAGGTTCGCCTGAAAAAACATTATAATAAATAAGTTATATATGCGATATCATATAAATGATATCAGCAGAAATAAGTCCGTCCCAATATGTGGAAATGTTCCGTTACATAAATACAAAATGTAGCG # Right flank : ATCTGCTGGAGTAGTGTTTTAGAGACTATAAAGAAAAGTCTGTAAGTAAGATTCTTCTATGATAATGCAAGGCGAAAAGTTTATTTATTGAGCTTTTCGCTCTTGTTTTATATATAACAGCTATAAATTTGTATGTCAAGAGCAGGCGAAAAATCCGCCGGTCTTGCTATATTCTGAGTCGCCTATTCGGGCAGGCGTCCTTCATACATAATACTCAGTTCCCCATATACCTGTGCCCGGTTGCGAACCGTTGTTGTCCATTTTTTCGTTGCTTTAAAAGTAGCAAGGTATAATGCTTTTAGGAGTGCTGTATCACTCGAAAAAACGCTTCTCTGACGGTTCAGCTTACGATATGTGGAATTCAGGGATTCAATGGCATTTGTCGTATAGATCACCTTTCTGACCGTTGCTGAAAACTTGAAAATAGGTGAAATTGCATCCCGGTTATCCTTCCAGCGTTTCATGGAATTCGGATATTTTGGTGCCCATTTTTCTGTTAC # Questionable array : NO Score: 3.00 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:-0.17, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACGTCCCGTAAGGGGCGTGTGAGTAGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.90,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.74 Confidence: LOW] # Array family : NA // Array 1 16294-14748 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJBSK010000053.1 Faecalicatena fissicatena strain MSK.15.247 OLHBJMGG_53, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================= ================== 16293 35 97.1 37 ..................................T CCCTGTGCCATATCTTCTGTGCTAATCATTCCAGCTT 16221 35 97.1 38 ..................................T CATTTAAAAATCCCTACCATTGGCAGGGTAGAAAGTAG 16148 35 97.1 39 ..................................T CAACTGCTCTGTAAATCTGGTACTCAATGCCACCTGCAA 16074 35 100.0 37 ................................... CTAACATCACGGCTTTCCAAACGTCAAGTTCGGAATT 16002 35 100.0 35 ................................... CACCGGTAAACACTTCGTATAGACGGTCAACGTTG 15932 35 100.0 39 ................................... CATAAAGCCTGTCCGTGTTAAGGTTATACCATGCACCGC 15858 35 100.0 35 ................................... TCCATATCTTCACTACTAACCATTCCTACCTCTTT 15788 35 100.0 37 ................................... TGAGTTCTTCAATCTCAGCTTCGAGCTTTTCAATCGA 15716 35 100.0 38 ................................... TGTTCTAATACAAAATACGCACCCATCTTCTTTATCAA 15643 35 100.0 35 ................................... TGACATAACTCCAACGTGAGTTATCCGTCTTCTTT 15573 35 100.0 35 ................................... TTCTTCTTCAGATCCGCCCATGTCTGGATGATTTT 15503 35 97.1 40 .............A..................... TTTGATGTCGATTAATTTTTGACATGAAAAAAGAGCTGGA 15428 35 100.0 38 ................................... TACACTTTAATGCCCTTTAATAAATCTCCGCCCTTGCG 15355 35 100.0 36 ................................... TCCTTTCTTATTAGGCGTTTTTGATTTTTTATTTGG 15284 35 100.0 34 ................................... CTAAGCGTCCCGTTCATTCATATCATTTCTTAAA 15215 35 100.0 37 ................................... CACAAACCGGACATCATATGGATTACGGTAACGGATT 15143 35 100.0 38 ................................... CAACATTGCTGATCGTTTTTATGGTGCTGAAACTGATC 15070 35 97.1 41 .............A..................... CTTGCTACCGCAAGGAATAAAAAATAATTTTTAGTTATCCT 14994 35 100.0 36 ................................... CCAAATATTTCTGTGATAATATGAAATCAAGGAATA 14923 35 100.0 37 ................................... CACCGGTAAACACCTCGTAGATCCGGTCAACGTTCAC 14851 35 97.1 34 ..............................A.... CTTGTAACCTTTTTCTCGTCTTTCTTCATCATGT 14782 35 82.9 0 .............A.A..T..GC..........T. | ========== ====== ====== ====== =================================== ========================================= ================== 22 35 98.4 37 ATTAAGAAATATAGCTCCCCGAGAGGGGACGGAAA # Left flank : TGAGCAAATTTACAGGTAATCATACAATTTCAGATCGTACCGTTTTTTTAGGCGGTGGCAGTGGATTTGTATCAAAAACTATGATATACTCATTATTTGAAGGCAGAGAAGCAGTTGCGGTTACAAAAGATATTTTTGAGAAAACAAAGGTCCCAAGAGAACACAAGCATGAAAAAGATTTGCTATACGGTGTCTCACCGCATATTCTCAAATGTACTCGTTATCAGGGAAAAGAATACATGATGGGACAGTGTGAGATGACGTTGCATCCAAAAGAATTATAGAGTGCAAAAGAATCATAGAGTGCAAAAGAATCATAGAATACAAAAGAATCAAAGAAGCAGAAATCCGGGAATTTTGCAGGCGTTTCCCACGCACCGCATAAACACTGGGAAAACCTGCAGAAATTCATTCCAAAGAAAGCTATATTTCCAGAAAAAACAATTTGCCACGCAAAACGGCAAAAACCCCCAGAAAACAAGCGGGGTCCAAGAGATGGT # Right flank : GGGATTTCTTCTATCTCCAACTATTGGCATTGTTTAATTAAATTCTCCGTCAGGGGACAATTTGCAAAGGGGGGTTTTTATGAGTTTGTTGTATGTAAATGAAAATGGTGCAACGATTGGTGTGGAAGCAAATAAGTGCGTGGTTCAATATCGAGATGGCATGAAAAAAATGATTCCGATTGAATCACTGGAAGGTATCACGATCATGGGACAGTCGCATCTGACAACAAAGTGTGCGGAGGAATGTATGTGCAGAGGAATCTCTGTCGCATATTTTTCAAAGGGCGGTAAGTATTTTGGGCGACTGATGTCCACGGATCATATCAATGTTCAAAGGCAGAGAAAACAAAGTGCTTTGTATGATACAGATTTTGCGATGAAACTGGGACAGAAGATTTTGAGTGCAAAGGTGAAAAATCAAAGCGTTGTTTTGCATCGCTATGAAAAAAGCCGTGAGCTTTTGCTGGATGAAGAACAGAAAATGATGCGGATATGCAAAG # Questionable array : NO Score: 3.18 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAAGAAATATAGCTCCCCGAGAGGGGACGGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA //