Array 1 70353-71538 **** Predicted by CRISPRDetect 2.4 *** >NZ_VABX01000012.1 Klebsiella pneumoniae strain CRE1273 1273K2016_contig000012, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 70353 29 100.0 32 ............................. TAGCTCCGAGGCTTCTTCTGCCTCGAATGCCG 70414 29 100.0 32 ............................. CGCCTTTTCCGGGGTGTTCGCTGTGCAGACCT 70475 29 100.0 32 ............................. ATAAATGCTCCCATTTGGCTTGAGCACACGGC 70536 29 100.0 32 ............................. AAAACGATCCTATTTCCGGGATTGCCACCGTG 70597 29 100.0 32 ............................. ATATCTATCGCCTGCTGGAGATTGGCCCGATA 70658 29 100.0 32 ............................. TGAGTCGTCATCAAAAATTGCGTCCATCAGGG 70719 29 100.0 32 ............................. TTCACTTGCCACCCCTCCCCAGGCTGGCGATC 70780 29 100.0 33 ............................. TCACTACTGCAGCCGCCCTCACTGCAGCACCGC 70842 29 100.0 32 ............................. TGATCATGCCGCCTGGTGTCGTAATTTTTCGC 70903 29 100.0 32 ............................. GACGGCGAGAGCGTGTTCAACCTCAACACACT 70964 29 100.0 32 ............................. AAGTCGCATTTGTTGAGGCGCTTTCAGTCGAC 71025 29 100.0 32 ............................. TACTCCTCGCCGATCATCGCCGGAATAACGAC 71086 29 100.0 32 ............................. TTGTCATTGTGTAAACCTCGTGGTTTGTTGGT 71147 29 100.0 32 ............................. CAGTCACTATTGATTTCGTTTTCTGCGAGATT 71208 29 100.0 32 ............................. TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 71269 29 100.0 32 ............................. ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 71330 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 71391 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 71452 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 71510 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================= ================== 20 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCGTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : CGTCCACTAACGTTATCGATCCTGAGGGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTGGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTGATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5895-6410 **** Predicted by CRISPRDetect 2.4 *** >NZ_VABX01000044.1 Klebsiella pneumoniae strain CRE1273 1273K2016_contig000044, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5895 29 100.0 32 ............................. ATAACTTAGTTATCTCTCAAGATAACTATCAG 5956 29 100.0 32 ............................. TAGTTCAAGAATGCATTATCTTTGTATGACTC 6017 29 100.0 32 ............................. AGCAACGTTTCCGGATTATATGGCTGGAACGT 6078 29 100.0 32 ............................. TTACTTTTTGGCAGTTGGTAAAACACTTTTGC 6139 29 93.1 32 ............CA............... CGAAAACGGCAACCTTCATAAAAACGTCTTTT 6200 29 100.0 32 ............................. CCGAGATTGAGTAAAGCAAAGTAACGGCGGTG 6261 29 93.1 32 ............CA............... TGTGTGTTGGCGTTCGTTAAATATTGTTAGTA 6322 29 93.1 32 ............CA............... CACTACCAGATCCGAATGGACACCCGTAATGA 6383 28 86.2 0 ............CA........-.....A | ========== ====== ====== ====== ============================= ================================ ================== 9 29 96.2 32 GTATTCCCCCCGTGTGCGGGGGTTATCGG # Left flank : TGATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCAAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTATA # Right flank : ACATAAAAACCGCAATGGTGGGGCTTTTGTTATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCTTCAGGATAACCCACATTCTGTCAAATCTTGCAGGTTGCAATCAGCAAAGGCCTTACGTCGATAAATTCATGCCTTGAGCTGGTAAGGAAGTATGACGTTATAACTCTGCATTTCTGGTTGATTAAGGTAGGGCGGCATTCCTGCTTTAAAAACAATCAATAATTTTGAACGGTAGTCGTCTTGATCCCAACTGCTACCTGATGGACTAGGCACCTGCAAAGATCCAATTTATACTGGTTATATATACAGTGTGCGCCGGGAGACCGGTAAAGATCAAGGGGTGAAAGTCCCCGACCATTGAAGGACCAGCAATCCACAGGGTCCCCGAGTCATGCGTTGTATACCGTGAGGTATGGGGCGAAGCGTTGACAGGGGTGTTGACAGGCCAGCCATTGAGCCACGAAATGTATATTAAA # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Alternate repeat : GTATTCCCCCCGCATGCGGGGGTTATCGG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //