Array 1 6898-5485 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOLR01000061.1 Haloarcula sinaiiensis ATCC 33800 contig_61, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 6897 30 100.0 35 .............................. ACGGCCCCCGACTGGTCGCTGTTGCTGGCCTCGCC 6832 30 100.0 34 .............................. CTCCGAAGAGTGTCAAGACGCTAATCGCACCGGC 6768 30 100.0 36 .............................. AACGTCTCGAAACAGTACGCCAGTGACCGCAGCTCG 6702 30 100.0 36 .............................. ACCCACTGTATGGGTCATCCAAATCAATGTTACAGT 6636 30 100.0 34 .............................. CCATAGTATCGAATCCAGCGAACGAAACGATAGT 6572 30 100.0 36 .............................. GGGTCGTCGCCGACCAGTGTACCGATGAGGACCTCG 6506 30 100.0 35 .............................. ACACTGGGCCTGGAACCGAGCATCATCCAGCCCGT 6441 30 100.0 33 .............................. GCGTCATCTGGGACGCTGTCCTGTGCAACCAGT 6378 30 100.0 35 .............................. ACCTCGAAACACAGTTCACGGATATCCCGGGTCAC 6313 30 100.0 37 .............................. CCGTGTCTCGCCCGTCACCCAGTCCGCGGCCGCCAGC 6246 30 100.0 36 .............................. ACCGACCTCCATCGCCCGGTCGTCTTCTGGTAGACT 6180 30 100.0 36 .............................. AGGGAGATTTAATCGCTCTTAGACGGCATTGCATCG 6114 30 100.0 36 .............................. TCTTGTTCGATGTCAGCGCGCCAGCCAGCGCCACCG 6048 30 100.0 42 .............................. TTCAGCAAAGCCCGCCCCAAGGGCGTGCCCGCGCTGGTCGTG 5976 30 100.0 36 .............................. GCGACGCGACGAGGATGCGACTCGACCGCGATAACG 5910 30 100.0 37 .............................. CTCGGTCCGGACTCGACGGTCATCGGCTCCGGAGAGT 5843 30 100.0 37 .............................. TTAGATGTAAGCAACTCTTACGAGAGAGTAACCAGAA 5776 30 96.7 36 ................G............. AAGCCCGGCGATATGAAGGACTGGGAAGTTGACCAC 5710 30 100.0 35 .............................. AGGTCTCCCTCCTCGAACAGCGTGATGCTGCCAGT 5645 30 96.7 35 .......G...................... GATCAAGAAAACTATGATGCGTGGATACAATCAGA 5580 30 93.3 36 ...............C.....A........ CTTAAGCAACATCTCGGGACTACTCGTCGCGGGAGG 5514 30 93.3 0 .................C..........A. | ========== ====== ====== ====== ============================== ========================================== ================== 22 30 99.1 36 GTTTCAGACGAACCCATGTGGGATTGAAGC # Left flank : TGAGGTCATCGAGCACTTCCCGCCGAGGGGAGGCAATCCGGACATATCGACGGTCGCCTTCATTGATATGCCCCCATGGGAACACGTTGGAGAAGGCGAAACCAACGCCATGGTTGGTCTCGTGTGTTTCGGCGTATTTCTGATTGTCTTCGAGACCACGCCAAATCCGTCCGCGGAGCTTGTGATGATACCCTGTATCGTATTCCGCGTCAGCAATTGAGTCAAGTGCCAGCTCAATGCGCACGGGTCACATCACCCCCACCTTGCTACCAGTTTTTGGCATATACGCACCATTACCCTAACCACGCTTGTAATTTTCCCTGCATGTATGACATACAATGTTTGACAAGATGGTTACGGTCAGCGGGTTATTACGGCTCCTTACAGGGGTTACTAGCATTACCATCAACCCCCCGGGGGTGACACAAGAATTGATGGTCGATGGGAAATTCTTTGTGAAACCACCTTCAATAGGTACTCAGACCGCCTAATTGAGGCGG # Right flank : ATCGTCATGAAGCTCGGTCCGTTCATCACCGCTGTGGATGCTGGCTTCGATTCCCCAGTACTCGTCAAACGACAGAGCTAAAGCTAACAGACCGGGCAATGGCGTGCTCGCGAGCGTGCTGGCAAGCGGTTCAGTGTAGCCCTTCAGTCCGCGACAGTCCCTCCATCAGTCAGTGCCGACGGCTGCTGACCGCCACCGTAGGAGCCCAGCGTCGTCTCACCGCTGTCAGCAAGCTTCGAGTCGCCATCGGCGTTCGCGAAGTGTCGAATCATCTGACCCATATCGGGGTGGTCGATTTCGAGTTCGGTCAGATTCAGGCGCAGCACCTGCTGTCTGTCTGGTTTGCCAGTCCCGATCCCGAAGTGCTCAGCGGCTTCTTGCATTATCTGATGCATCACTGGTCTCGATATCTCGTCGTCGAACACTGCCTCCCGAAGTTCTCGCTCGGGGAGCGTCACGTCCTTTGAGGACGTCGACATTGCGCGGCGGTGAAGACGACG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCATGTGGGATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGATTGAAGC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.20,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 16829-20535 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOLR01000061.1 Haloarcula sinaiiensis ATCC 33800 contig_61, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 16829 30 100.0 35 .............................. AAGACGACGAACGTATCTGAACTGAAACAGCAGTA 16894 30 100.0 36 .............................. ACGATAAGCCCGATCTGCAACACGCCCATCGCCAAC 16960 30 100.0 36 .............................. GAAAATACGTTGTTCTCCGCCGCTGCGTCGAAGCTC 17026 30 100.0 35 .............................. TTCGTCGTGGCCCGCTGCTGGGAGCATCCCGAACT 17091 30 100.0 36 .............................. ACATTGAGCGGCCCGGACGCCCTCGACCGTCAAGCT 17157 30 100.0 38 .............................. AACGTCGCGTCGTGCGTCTGTGCTTGGACGTTGCGCGC 17225 30 100.0 38 .............................. AACGTCGCGTCGTGCGTCTGTGCTTGGACGTTGCGCGC 17293 30 100.0 34 .............................. AGCGTCAGTTCGCCCGCATGTAAGGTTGACCCGG 17357 30 100.0 36 .............................. ACTCGGGAGGGAGTCGACCCTCTCATCTCTCGGATA 17423 30 100.0 36 .............................. ACGGGCGGCCAGACCGAGTACGCCCACATCTACCTC 17489 30 100.0 36 .............................. AGATGACATGGACCGCGAAACCACCAAGACAAACGT 17555 30 100.0 37 .............................. GAACCACAGACGCGAAAAGACTTGCCCCACGGCCACA 17622 30 100.0 35 .............................. TCCTGTTGTGGCTGGGGTAGGTCTGGCCACTGGAC 17687 30 100.0 36 .............................. GGACGGCTCCACAGCCTCTGGAGTCCAGTCCATCCA 17753 30 100.0 35 .............................. GGAACTAACTCGGTAATCTCCGAATAGCTCATATC 17818 30 100.0 33 .............................. AGCACGACCGCTATCCTGTCCGGCAATGGTGCA 17881 30 100.0 35 .............................. AGGCGAAGCATCTATCGACACGCCTGACGGCAATG 17946 30 96.7 36 ............................A. GGGTACGGGGCGCAAATCCTCGCAACCGAAAACAAC 18012 30 100.0 36 .............................. GCGCCCTATCAGTTGCGGCCAGCCAGCCCGCTGACA 18078 30 100.0 36 .............................. TCGGAGACGTGGGGTAGGTTGCGTACGTCGTCATTG 18144 30 100.0 35 .............................. TTCCGAGCGGCGGCGCGGGCGGCGAGTTCCCCGTT 18209 30 100.0 39 .............................. AAGTTAAATCAAGAAGGTATGGACCCGTGGAAGGATAAC 18278 30 100.0 34 .............................. ACTTGCTCAATCAGGGACTGCGTTGGTATGGCCT 18342 30 100.0 37 .............................. GACCTGCTGAAAATGTCAAGCATCGTCGCCGGGACGC 18409 30 100.0 36 .............................. AAACACGCAAAGGAACAAGTCGGACACAACAAGCTC 18475 30 100.0 33 .............................. AGAGCGCGTGCTTCGTGTAGCGCTCTGGATGGA 18538 30 100.0 35 .............................. TTCGGCGCGATGACGCTGGACAACCTGACGCTACT 18603 30 100.0 35 .............................. TCGCCGGTCCTGAGCGGGCGCCATATTTTGAATAT 18668 30 100.0 36 .............................. GCTCTGTGTCATTGAATCTCGACCTCCTCAATCGCC 18734 30 100.0 36 .............................. GCTCTGTGTCATTGAATCTCGACCTCCTCAATCGCC 18800 30 100.0 36 .............................. GTCGAGCACTCCGTCCCCAGGGTCATGTGGACCGCG 18866 30 96.7 35 ............................A. CTGACGCGGGGGAGTGGCGGCGACGGCTGGATAGG 18931 30 100.0 35 .............................. GAGACGTGGGTCATGACAGAGGGCGTCAGCGACAA 18996 30 100.0 36 .............................. GGCGCGTTGCGACTGTGTTAATCGCTTCCAGCGCGT 19062 30 100.0 36 .............................. ATTGCCGATGGGTCAAGCTGGACACAGCTCGGGACG 19128 30 100.0 36 .............................. GAGGCCGAACTGTCCGACGAGTCGCTGGCCGAACAG 19194 30 100.0 36 .............................. ATGGGCGAGAAGGCCGGGTTCGACCCGGGACCGAGG 19260 30 100.0 35 .............................. TTAGTCCTCTCCGTTCATTGACTTAGCCACGCGGT 19325 30 100.0 35 .............................. GGGCGCGCGGACGGCGATACGCTGGCGTCCCTGCC 19390 30 100.0 35 .............................. GGTCCGAAGGGCTCCGGTAAGAGCACCATGTCCGC 19455 30 100.0 34 .............................. GGGTTCGAGGACTGCCACCCGGTTTATCGCTATC 19519 30 100.0 36 .............................. TATTCGAGTGCGTCGCCACCGCCAGCGGTGGGAACG 19585 30 100.0 33 .............................. AACATAGGAGGAGGGAGTAACGAATGCAACATG 19648 30 100.0 37 .............................. TCATCGAGGCCTTCGATGCGGATCGAGACGTCGTCAC 19715 30 100.0 35 .............................. GTGCTGGTAGCTCTGGCTTTGACTTTGACCGTCGC 19780 30 100.0 36 .............................. CACACTCCAATGAGCACAGTTGGCGGCGATAAACGA 19846 30 100.0 36 .............................. CACACTCCAATGAGCACAGTTGGCGGCGATAAACGA 19912 30 100.0 35 .............................. CGACGAACTGACCGAAGTGATTGAGGCGATTGAAG 19977 30 100.0 35 .............................. AGGAGTTAGATGAATGAGTCACGTCAACCCAGAAA 20042 30 100.0 35 .............................. GCGACGTCCGTATTCACGTGGGGACACACGCCGGA 20107 30 100.0 36 .............................. TGCTCGTCGACACCGTCTATGGTTGACTGCACGCTG 20173 30 100.0 37 .............................. GGGCTGCTTGAGCGTCTCGACCGCGGCCTGTATTATC 20240 30 100.0 35 .............................. CGACATAAAGGCAATGACCGCGTTTCTGAGGTAGA 20305 30 100.0 38 .............................. GAGTACCAGATAGACCTCGATGCGAAGGACTTGGAGGG 20373 30 100.0 37 .............................. AGTGGATAGGTTACAGCCGGTCAATCGTCGCTTCGGT 20440 30 100.0 36 .............................. AAGGTGCAGGAGACTGACGACCGAGTCATCTTCAGC 20506 30 90.0 0 ..................C.........TT | ========== ====== ====== ====== ============================== ======================================= ================== 57 30 99.7 36 GTTTCAGACGAACCCTTGTGGGATTGAAGC # Left flank : CGAAAAGTCAGCTTCAAGACCTTAGTTCAAACGGATGTCTATAGCTTGAAGAAGCATATTCTCACTGGAGAATCGTACCACCCAACGGAACGGTGGTGGTAAGATGCAGGTCATCGTCGTTTATGATGTCCCCGCCGATCGAACCCACATCTATCGAAAGCTACTTAGAAGACAACTTGAGCATCTTCAGAACTCCGTATTTTTTGGTGAACTAACTAAAGGTCAGGTGACCGCGCTGAAACAAGATCTGAAAAAGAAACTAGATGCTGATGATGAGGTGGTGGTTTTTGAATCCACGAATCCAGCTTCATTCGAAGTTACGACGTACGGTGACGCCGACGATCCCGGTAGCCGTTTTACCTGAGGCTGATCCCGACCTCTGGTAGACAAGTATCTTGTTTCAATGGACCCCCCGGGGGAACCACGGAAATTGAGGGTCGATGAAAAATACCATATCAAACCACGCTGTAGGGACACATTAGCCCCCCAAAACTGGGCGG # Right flank : TAGCACCGGAAGTTACAATTCCTGAATGCCACGGCAAGTTAGACCCACAACGATTGTTTGACTCTTCCCACACCACTGTCTCCGGAGCAAAACGCCCTACGCCGGCCTGACCGGCGCGACATACTGACTCCTGACCTTGTCACCCTCGCGCCATTGCAAGTAGTAGTACTCGCGATCGTCGATACTCTTCACTGTCACCGTGCCCTTCGAGCGTGGTATTTCGGCCTGCTCGTAGGCGTCGGCTACTTTCTCGTCCCAGTCGTCCTCGTCGTTGGCCCATTCCTCGGGTGTGTCCACGCTGTTCTGGTCCTCGACCCCGTCATCGCTCTCTAGCAGCGCGGCCAGCTCGTCGACGGCGGCGATCGCGTCCTCGTGCGCATCGTGACCGTCCTGGCTGAGCCCCTCGACGTCAATGCGTTCCAGCGCCGACAGCGCTTGGTGGGCGTACTCCTCGTCGCTCATACGCTAACCAACACGACCGGGCAGAATAGCGTTTGTGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTGGGATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGATTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.20,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //