Array 1 34-2135 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAHD01000045.1 Kineosphaera limosa NBRC 100340, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 34 28 100.0 33 ............................ CCCGCGCTATGGCGATTCCGGGTAAGCGCAAAG 95 28 100.0 33 ............................ CTGCTGACTGACGACCCGCCCTGCCAGGGATGC 156 28 100.0 33 ............................ CCGCCGTCGACGCCGATCGTGAATTGACTTTCA 217 28 100.0 33 ............................ ATGGGGCGCGACTGGCGACATCGACGCGAGCGA 278 28 100.0 33 ............................ CGCCACCCGCGTCGTGTGCACCACACCCGTGAG 339 28 100.0 33 ............................ GTACCCGCTTTCGTCGCCGACGATATCGGCCCA 400 28 100.0 33 ............................ CGCACTCATGTCGCCGCCGAGGAGCCAGAACTC 461 28 100.0 33 ............................ CCTCGCCGGTGCCGGCTCGCAGGCCGCCGAGGA 522 28 100.0 33 ............................ CGGCCGTGCGCCAGTACGAGGCCTTGAGCTCGC 583 28 100.0 33 ............................ CTCGGGGAGCGCTGCGGCGATCACCTGGCCGAT 644 28 100.0 33 ............................ CCAGGAGGTCCAGTGGGCCGACGAGGACTACCA 705 28 100.0 33 ............................ GTCCGGCACCCAGCCGATCCCGTCGCGTCCCTC 766 28 100.0 33 ............................ CCGTCCTTCACGATCAACCCACCGGGCAAGACG 827 28 100.0 33 ............................ CGTGTGCGTCGACGACGACCTGCTGCGGAGCTA 888 28 100.0 33 ............................ TTCAGCGGCACGCTGCCGCGTGGTCAATGGGAT 949 28 100.0 33 ............................ CGACGACGTACACGTACGCCAGCGCCACCGGCG 1010 28 100.0 33 ............................ GTACCCGCTTTCGTCGCCGACGATATCGGCCCA 1071 28 100.0 33 ............................ CATCGACAGACCGTCCAAGGCGCGATTGGGTCG 1132 28 100.0 33 ............................ TGGGTGCCGGAGGAGATTTACACGTATCCCGCG 1193 28 100.0 33 ............................ CTCGGTGCCGTGGTCGAGCTCAAGACATGACGC 1254 28 100.0 33 ............................ CCGCCATCGACTGAGAAAATGGCCGCCTGATTG 1315 28 100.0 33 ............................ CAGGCGGCGGTACCGGCGACGGAGCGACCGGCC 1376 28 100.0 33 ............................ GCGGTACTGGTTTCACTCGTCAGAGTTCAGTGA 1437 28 100.0 33 ............................ CGACGCCGGGGTCTTGTGGTGGGTGTCGGAGTT 1498 28 100.0 33 ............................ CCGCCCGGACGATGTCCCAGTAGCGTTCCCGGA 1559 28 100.0 33 ............................ CGGGAAACTCTCGGCCACCGACAAGCGCGCCGC 1620 28 100.0 33 ............................ CTTCGACGCGGAAGTTCTCGCCGCGCTGCTCCG 1681 28 100.0 33 ............................ CCAGTCCGGGATCGTGGCCCGGCAGACCGGCCT 1742 28 100.0 33 ............................ CTTCACCACGTAGCCAACAGCTACTTTCAACGA 1803 28 100.0 33 ............................ CGCCGACAATGACCGGAACGGCATCTGGATGCC 1864 28 100.0 33 ............................ GGGGCAGAAGCCCCAGCTGCACAACGTCTCCCC 1925 28 100.0 33 ............................ CCTCCCACCCGTGCTGGCGGGCACGCAGACCGC 1986 28 100.0 33 ............................ CGTCTTCCTCGCCGACATGCTCGGCGTCAGCGA 2047 28 100.0 33 ............................ GGCTGGACGGGACTATGGGCTGCCGTGGCAGGC 2108 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 35 28 100.0 33 GTGCTCCCCGCGCTCGCGGGGATGAGCC # Left flank : GGTCACGTCTACCCGCTCTGAGAATTGCCCCAGG # Right flank : CCCGCTGCGGGTCGTGTCCTAGTCCTCCAGGCGGCCCTTGAAATAGCTCTCGACCGGCCATCGTCACGAAGACTCTGTAGTGATCACCCGACAATGAGTTTGCCACCTGCCACCGACGTGACAGAGGCTGAGGCGTGAGCATCGAGATCGAGACTCTGACGCCGGACGACGGGCCCTGGCTGGCCGACACGTTGGACTACGCGTTCGTGGCGGACCCGACGCGGCCGGCGCGGGCGCATCTGTTGGAGCAGGTGGACTGGCGGCGGGCGTTCGGGGCGACGCGGGACGGTCAGCGCGCCGGCTGCTTCTTGCTGCTCGACCTGCAGCTTGCGGTGCCCGGGCCGCTGGGGACCGTTCGCAGCCACCACCTCGACGGCGTCAGCTGGGTCGTCGTCAGTCCGGACCACCGACGTCAAGGTGTGCTGGGCGCGATGATGCGTCATCACCTCGAGCAGGCCCGGGAGCGCGGTGTCGCCTGGAGCGGATTGCACGCCAGCGAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCTCGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCTCGCGGGGATGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [21.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 98771-101365 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAHD01000017.1 Kineosphaera limosa NBRC 100340, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 98771 28 100.0 33 ............................ CACCACGATGCCCCGAATGCGAGGTTGCACCAC 98832 28 100.0 33 ............................ CTTGTGCGCCGACCCAGGCCTGGAGCGCCTGAC 98893 28 100.0 33 ............................ CGCCGACATGTCTCCGCCGAGCAGCCAGAACTC 98954 28 100.0 33 ............................ CGGTGCTCCGAGCAGGCCAGACGGATCTCGACG 99015 28 100.0 33 ............................ GTCGCTGGTGGCGGCATGGCTGGGATGCGTGCG 99076 28 100.0 33 ............................ GGAACGGGTGCGGGCCGAACTCGCCGGGCTCGA 99137 28 100.0 34 ............................ CTGCATCGGGCCCTTCGCGCCGGCCGACGAGGCC 99199 28 100.0 33 ............................ CGGTTCCCCGGCTACGCGGAAGCGCCGGCACGG 99260 28 100.0 33 ............................ CAGGCCGCTCGGTGCCGGCCGAAACTACCGGAG 99321 28 100.0 33 ............................ CCAGTGGGTGTCGTCGGGGGTGACGGTCAGCCA 99382 28 100.0 33 ............................ CGGTCTTGTCCACGGCCCGGGTGCCCTTGGTGA 99443 28 100.0 33 ............................ CGATGGCCTGCGCCGCGGTCGCGACGTTCACTG 99504 28 100.0 34 ............................ CACGATCCTCCGGCCCAACCCACTGGTCCCCGAA 99566 28 100.0 33 ............................ CGACGGTGACTCCATCACTACCAGCCGAGCCGA 99627 28 100.0 33 ............................ CGCCGAGGCCAAGGCCAAGCAGCAGGAGCTGCA 99688 28 100.0 33 ............................ ACGTGCAGCTGGACGGCAAGCAGCTCGACGCGC 99749 28 100.0 33 ............................ CTCGTCGGCCGCTATCACGCATGGGATGGCGCC 99810 28 100.0 33 ............................ CTTGTCAGGGTTGGCCCGGTAGTACTTGCGCAT 99871 28 100.0 33 ............................ TCACCGCATCCTTGGCCGACCAGTCGGCGAGCG 99932 28 100.0 33 ............................ GCTCATGCTCGTGACGCGGCGGCCCTTGATGAG 99993 28 100.0 33 ............................ TGCCTATCCAGGCAGTGACGATGCGGAACGCGC 100054 28 100.0 33 ............................ CCGGACCTTGTACGCGACCCCCATCGACGTGGC 100115 28 100.0 33 ............................ GGCGTCATGAGCGGCGTGGTGGCGACCCCTACA 100176 28 100.0 33 ............................ CGCCCGTTCAGTCTCCCATCCCGCACCCTGGCA 100237 28 100.0 33 ............................ CCCCCGCCAATGACCGGCCTGCGGTGGGGGTGC 100298 28 100.0 33 ............................ CGAAAACGGACAACCGTCCCGAGAACCTCATGC 100359 28 100.0 33 ............................ CCGCACCATGCAGAAGAACCTGTCGCACAAGAC 100420 28 100.0 33 ............................ CGCCGACACCGGCGTCAAGGGCTTCGTCGGCGA 100481 28 100.0 33 ............................ CTCGCGGTTGGACTCCATGCCGAGCATCGAGCG 100542 28 100.0 33 ............................ CCGCAAGCGCATCTCGATCCACACGACGATCCT 100603 28 100.0 33 ............................ CTCGCCCTGCGCCGTGATCGACCCCGCGACGCT 100664 28 100.0 33 ............................ GGTCGACGTGACCGCCGACGTGGTCCACCACCT 100725 28 100.0 33 ............................ CCCCGCCGCCGTCACGGACTACATGCTGCGCGA 100786 28 100.0 33 ............................ CCGGCGCATCGACGACGAGAGGGGCAGCTGATG 100847 28 100.0 33 ............................ CGCGATGGCCCCGGCCCAGCACGCCCCCAAGGT 100908 28 100.0 33 ............................ CGACCGTGCGAGTGCGTCCTTGTCCGGCTCGGG 100969 28 100.0 35 ............................ CCTCGGGGGCGGGGCGGCCCAGCGTGACCGCGAGT 101032 28 100.0 33 ............................ GGTGACTGTGCCCTCCCACTGGATGGACGACAA 101093 28 100.0 33 ............................ CAAGATGGGGGGCCCCGCACCCCGGACGCGCTG 101154 28 100.0 33 ............................ CCACCCGCAACCCCGAGCGTCGGACAACGTCTG 101215 28 100.0 34 ............................ TACCCAACCCCAGGAAGGACGACCACCAATGAGC 101277 28 100.0 33 ............................ GTCCACGGATGCAGTGTTGCGTGGACGTGACGC 101338 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ =================================== ================== 43 28 100.0 33 GTGCTCCCCGCGCTCGCGGGGATGAGCC # Left flank : CGGAGGACGCGGGCGACGACTGGGATGTCGTCGAGCTGTGGGACGGCGCGTCGCGACGCGTCGCCGGAGGCGTCTCGTACGGGGATGAGGTCGACGTGCCGTGGTAGTGCTTGTCGTCACCGCCTGCCCCTCGGGGCTGCGAGGCTATCTAACCCGATGGCTCCTCGAGATCAGCCATGGCGTGTTCGTTGGCCACGTCACGACTCGGGTGCGGGAGCTGTTGTGGCGGGGAAGTCTGCGCGAACGCCAAAGACGGGCGCGCGCTTTTGGTGTACAGCGTTCGTGGGGAGCAGCGCCTCGAGTTCAAGGTCCACCGGCACGACTGGCTACCCACCGACTTCGACGGCATCCAGCTCATGATGCGGCCCACGGAACCCACCTCCGAAGCCGGCGGCATGAGACACGGCTGGAGTAAGGCCAGCCGCTACCGTCGAGCGGCACGCACTTCGAAACCGAATCAACAGTGACCGCTCGCGCTGTATTCTTGCTGTTCAGCAAGT # Right flank : CTCGACACGGCACTTGCGTCGATGGTCGCGAGCGTGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCTCGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCTCGCGGGGATGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [48.3-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1-1310 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAHD01000148.1 Kineosphaera limosa NBRC 100340, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 1 28 100.0 33 ............................ CACCCCGGGGGTCCCGTCGTCGCTGCGGCAATG 62 28 100.0 33 ............................ CGTGCCTCCTGTCACCACGCGGTGGACGCCTCA 123 28 100.0 33 ............................ CTGGAAGTAGCCGCCGGTGCCTTGTGTGTGCGC 184 28 100.0 33 ............................ CGCGGTCCACGCCCCGGCGAACCGGGGTAATCG 245 28 100.0 33 ............................ CGCCGAGATCGTCGAAGAGGGCGACCTGAAGCC 306 28 100.0 33 ............................ GCAATCTCGCCAGGGGGAGGATTGGGGTCGGGG 367 28 100.0 33 ............................ GCGTGGCTCGCGTCTGAGGCTGAGCCTGGCGCG 428 28 100.0 33 ............................ CGGGGTCACATTCGCGAATGACGTCTGCCGGAT 489 28 100.0 33 ............................ TGCCCTGCGATCCTCGCGTGTCGTCGTGAGCAT 550 28 100.0 33 ............................ CAGCGCCCGCGACCCCCGCGGAGCGTCTGGGCG 611 28 100.0 33 ............................ CAGATACTGGCCGCCGCAGGATCGGGCCATATC 672 28 100.0 34 ............................ TTGATTTTCACTTCCATCGGCAAGCGTGATTGTG 734 28 100.0 33 ............................ CCGACCATGACCACCGACGTCGCCACCATTCGC 795 28 100.0 33 ............................ TTGGTCGACTGGACGCAGGATCGCACCCTGGCC 856 28 100.0 33 ............................ CGGATGGCTCGCCGAACGCCTATTCCAACGGCT 917 28 100.0 33 ............................ CCTCCCAGGCAACCGCCGGCCAGCTCCCAGCTT 978 28 100.0 33 ............................ GCGGCGCGAAGCGTCGCAGGATCGCACAGTGGG 1039 28 100.0 33 ............................ GTGGCGTACCGCCCTGAGCGCCCGACGCCGGCG 1100 28 100.0 33 ............................ CGCCGACCAGTCACCGCCCACGATCGGCAACCT 1161 28 100.0 33 ............................ GTCGTTTGTTGAAGCCGACTGGGCGGTCCTCGA 1222 28 96.4 33 ..........................T. CACCCTCACTGCGGGCCACCATCTCCGGGGTGT 1283 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 22 28 99.8 33 GTGCTCCCCGCGCTCGCGGGGATGAGCC # Left flank : | # Right flank : CGCGCAGACCGCCGCGACCTCCTGGAACGCCT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCTCGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCTCGCGGGGATGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 35-794 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAHD01000149.1 Kineosphaera limosa NBRC 100340, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 35 28 100.0 33 ............................ CTCCCTCCCGGTGTTGTTCGGTCTCGAGGTTGG 96 28 100.0 33 ............................ CCGCTGGTTGTCGACGGCGCGTACGGGCCAGCG 157 28 100.0 33 ............................ CCGCCGGCCAGCTCCCAGCTTCAGCCCCCAGGA 218 28 100.0 33 ............................ CACCGACAGTGCGACCCCGGCAGCGGCGAGCGC 279 28 100.0 33 ............................ CGAGTGCCCCTGTGCCCACATCTACGGCGGCGC 340 28 100.0 33 ............................ CTGGGGGTGACCGTGGACGCTGAGGTTGAGATC 401 28 100.0 33 ............................ CGCGTCCCGCTGCTGCCGCAACGCCTTGTCGGG 462 28 100.0 33 ............................ TGGTTGAGGGACACCCTTTTCCATTTCGTCTCC 523 28 100.0 33 ............................ CGACGCCAATGCGAAGTCCGGGCTGTCCGTGTC 584 28 100.0 33 ............................ TGTCGAAAAGGGCAGCAAGAATGGCGCCCGTCT 645 28 96.4 33 .....................G...... CTGGGTCATGGCGGACGCGGCGGCCTCAGCAGC 706 28 100.0 33 ............................ GTTGGCGCGGGAAGCGGCCGCCGACATGCTTGG 767 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 13 28 99.7 33 GTGCTCCCCGCGCTCGCGGGGATGAGCC # Left flank : CCGCGCCGTGGACCAGGACCAGGGGGTCCATGTCG # Right flank : CTCGGCCGTGACGTCCGGTGGGAAGTCCCTCGAGTGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCTCGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCTCGCGGGGATGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [15.0-18.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //