Array 1 50-428 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADCKX010000023.1 Enterobacter cloacae complex sp. P11RS 1701062109_S58_R1_(paired)_contig_23, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================================================================== ================== 50 28 96.4 32 .............T.............. ATAAAAATCGGCTGGCCGTCGGCGCGGTGTAT 110 28 100.0 32 ............................ GTCACGTTTTCCCAGCCGCCGATCTCGATCAC 170 28 64.3 83 ..................NNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACAGGCAGCTTAGAAAATATGAAAATGGCGGGGTTATCCCCGCCCTAC 281 28 100.0 33 ............................ TTAACGAGAGCGACGATTTCCCCGATCGAGACG 342 28 96.4 32 ................A........... TTCAATCGAATTAACCGACAGTACCGGGAGTA 402 26 85.7 0 ..........--...C......C..... | C [427] ========== ====== ====== ====== ============================ =================================================================================== ================== 6 28 90.5 43 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TACAGGCAGCTTAGAAAATGACGTCTTCATAATCCAGCCCCTGTAAGGCG # Right flank : AATAGAAAATAAGGCCTAACAGTCGTCGCACCGTGCACTGTCGAACAGACAGCCCCAAATCTCAAACGAACCGCCAACTAATTGTTCAAATAATCAACAGCACCACTAAAAAATAAGGCCGGGAATATCCCGGCCTTATTTAATATTCATCTGCCATTACAGGCGAAAAAATTAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAAAATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGCGCAGTTACCACGTGACCGTTTTCCAGCTCTACGCGAAACATGGTATTAGGCAACGTATCAAGTACGGTACCCTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCAAGTTTTGAACCGGCAAGATAATGCCGAAATTCATCAATTAAGTAAAGAATTGCGCGATTAAAACGCAGCAAAACAGTTTCGGCGC # Questionable array : NO Score: 4.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.53, 5:0, 6:0.25, 7:-0.87, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 14915-14647 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADCKX010000003.1 Enterobacter cloacae complex sp. P11RS 1701062109_S58_R1_(paired)_contig_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 14914 28 100.0 32 ............................ AGGAAGAGTACCAGGCGCGTAAAACTGGCACG 14854 28 100.0 32 ............................ GAGGCAGTGGCGCAGGTTGTTCGGCAGCTTGT 14794 28 100.0 32 ............................ ATATGCAATGTTACCGAGTTAACACTGTAGTG 14734 28 100.0 32 ............................ AGTACGCCCTGCGCACCGGGTTGATCGCCTTT 14674 28 85.7 0 .....................A.GC.C. | ========== ====== ====== ====== ============================ ================================ ================== 5 28 97.1 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TCTCTGGACCCTTTTTCATTGGTGGTTTTTAAGTCTTTGATTTTATTAAGCGGAATTATTTGTGATGAAAAAAGGGTTTAAGGGGTATTTTTTAGGGGAATTCTTTATCTGACAAGGTGATAGGTGTAGATTGTTCCAGTTTACTGCCGTACAGGCAGCTTAGAAAAATTCCAGCCCCGCCGAAGTCCTGGCGGCTACGTTTACTGCCGTACAGGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACAGGCAGCTTAGAAAATGCCGTCCCAACCCCCGCCACCGGGCGGGAAGTTTACTGCCGTACAGGCAGCTTAGAAATCATTACGCAAAGCGCAAAAAGCCTTTCGCATGTTTACTGCCGTACAGGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTACAGGCAGCTTAGAAAAGCGTGCGAAGGAATACGGCGGCGGCTGGTGG # Right flank : ACGTAGGCCGGGTAAACGCAGTGCCACCCGGCAAAAAAGCCCGGTGGCGCTGACGCTTACCGGGCCTACGATCGAACGTTTATTGCTTATGCGAGGACCAAATCCCCCTGCGGATGGCACGAGCACGCCAGCACGTAACCCTCGGCAATTTCCGCGTCGGACAGCGTCATGGTGCTGGTGACGGTATATTCCCCTGAAACCACTTTCGTTTTACAGCAGCCGCACACGCCCGCACGGCAGGCCGCGACTACCGGCACCTTGTTGCTTTCCAGCACTTCCAGCAGCGTGGTGCCCACGCGGCCAAAGAAGGTCTGTGCGGGCTGCAGTTTGGTGAACTGAATCCCGCTGGTTGCCGCTTCCGCCACCGGCGTGAAGAACTGCTCTTTGAAGAAGCGGGTCACGCCAAGCGCTCTAACTTCTTTCTCCACGATATCCATGTACGGCGCCGGGCCGCAGGTCATCACGGTACGGTTCGCAATGTCCGGCACGCTTTGCAGTAG # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 15-225 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADCKX010000048.1 Enterobacter cloacae complex sp. P11RS 1701062109_S58_R1_(paired)_contig_48, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 15 28 100.0 32 ............................ TGAGAACATAGTGGTATGAGTGTGTGATTTGA 75 28 100.0 32 ............................ TGCATGGTCATGCGGGAATAGATAAGCCGCTT 135 28 100.0 33 ............................ TGGTGCGTTGCCGCCAGCCGTTCTGAGGTCTGG 196 28 82.1 0 .C...............A...GC.T... | AC [220] ========== ====== ====== ====== ============================ ================================= ================== 4 28 95.5 33 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CCCCCACCCCCTCCG # Right flank : ATCTACCCCTCTTAAACATTTACTTTGCCTATTCAAAACTCAATATCATCAAACCCACACTCTCTATTTTTTACAATAAATAAAAAACTCATTCACGCGCCAATTATATTCTAAAAAATATATTATTCGTAAATATAATACATTGAATGGGAAAGTGATTTTTCGCTTTATTATCACGATAATTACTCTTCATTTGATACCCGTCACATTTGTTTTCATCTTATCTTCGATAACATACCCGCATTCAATACCTTGAAATTAAAGCCGTTGCTATGCCTGCAAACAGCGTTACCCCAACAGATTTAAAAACAATCCTGCATTCAAAGCGCGCCAACATTTATTACCTGGAGAAATGCCGCATCCAGGTAAATGGTGGGCGTGTTGAATATGTCACCCAGGAAGGAAAAGAGTCGTTTTATTGGAATATTCCCATCGCGAATACCACGGCAGTGATGCTGGGAATGGGAACATCCGTTACGCAAATGGCAATGCGGGAGTTT # Questionable array : NO Score: 5.64 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [3.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1-260 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADCKX010000079.1 Enterobacter cloacae complex sp. P11RS 1701062109_S58_R1_(paired)_contig_79, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1 18 64.3 33 ----------.................. AGAGAAGCGTGTTGCGGTGCTGAAAACATTATT 52 28 96.4 32 ........T................... TCATCAATGCGGTCCAGCTGCGCGCTGTTACC 112 28 100.0 32 ............................ ACCTGCAACGAATTAATCAGGCTTGGACTGCT 172 28 96.4 33 ..........T................. CAAAATGGGTCGGTAAAGCGGCGTGGGGCGCTG 233 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 5 28 91.4 33 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : | # Right flank : TCCAACATTGCAGTAAGACACCCGCCGCTTAAGTGCACTGCCGTACAGGCA # Questionable array : NO Score: 5.55 # Score Detail : 1:0, 2:3, 3:0, 4:0.57, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.63%AT] # Reference repeat match prediction: F [matched GTTCCCTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 199-51 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADCKX010000052.1 Enterobacter cloacae complex sp. P11RS 1701062109_S58_R1_(paired)_contig_52, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 198 28 100.0 32 ............................ GAAGGGGATGACGGCCGCAAGACCGTGCTGAC 138 28 100.0 32 ............................ AGTACATGATCCCTGGCGACAACGGCAAGGTC 78 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 3 28 100.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TCCCCCAAACGCAGCCCGTATGCCGTTGCCTCGGGGCTTATCTGGAAGAAGTTAAAACCGGCCTCACGGAATCCATGCGTGATTTTCAAGTGGTGGAATTTGAGGACGAAGCGGAACAACCGCGACAAAAAGAGTGGCTGCTGGAAGATACCGAAACGAAATGTGACTACTGCCGGGCGTTGAATCATGTGCTGCTGGTGTCGCATTTTGACCGCGACATGCTGCCGCATCTTACAGGACTGCTCCATGACATTACGCATTCTATGGCCGCAGATGTTGTTGCGCCTCAACGTGAAGAAACGGTAATTCACATTATTTCCTGAGTGCAATCCAGGGCGTCGGGGGCGTTATTCTGACGCCATTGGTTTATACCCTTTTTTCTGATGCTTACGTAACATATTGATTTATATAGTGCGGATTTACGTTCCAGAAAAAAGGGTTTTAGGCGTAAAAGTTGATTATTTTATTTGCTAACAATAAGATGGCGTTGTTTCCTTTCA # Right flank : AATTCCCGATTTTGTTCTTCAGGCTCTCGTCGAGTTCACTGCCGTACAGGC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.10,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //