Array 1 29-192 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNUS01000083.1 Thermococcus sp. 21S9 NODE_84_length_223_cov_78.270833, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 29 30 100.0 38 .............................. TGGGACCTTTTGGCTTCACCCATATGATGGTCTTCTGA 97 30 100.0 36 .............................. ATGAACGCTTCGTTTAGGTCTACTGCGCCTTCTAAG 163 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 3 30 100.0 38 GTTGCAATAAGACTCGAGGAGAATTGAAAG # Left flank : TGAACTCCAGGAGAGCGAGGCCCATCTCG # Right flank : CTTAACCGGAAAGGCCTCAGGCCTAAGGCCA # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCGAGGAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [18.3-21.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 1 192-30 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNUS01000084.1 Thermococcus sp. 21S9 NODE_85_length_223_cov_69.343750, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 191 30 100.0 35 .............................. CTTAACCGGAAAGGCCTCAGGCCTAAGGCCATGCC 126 30 100.0 37 .............................. CTCAGGCTTCTTCTCCTTCTTTTTCCTGCTTGACATG 59 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 3 30 100.0 36 GTTGCAATAAGACTCGAGGAGAATTGAAAG # Left flank : ACGCTTCGTTTAGGTCTACTGCGCCTTCTAA # Right flank : GGAAACCGGGTGGTTAGGGTCAGGAATAAG # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCGAGGAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [23.3-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 1 632-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNUS01000001.1 Thermococcus sp. 21S9 NODE_1_length_1870011_cov_45.224947, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 631 30 100.0 36 .............................. CGTCTCACTCTACGCGGCCACTCACAGTTACTCGGA 565 30 100.0 37 .............................. ACGCAACCATCTATGGCCTTGAGGTTCCTGAAGAGCT 498 30 100.0 37 .............................. CTTATCACCATTACGGTCGGCTCCTCCGGCGCGTCCT 431 30 100.0 39 .............................. TAAACACCAGGCCGTCCGTAGAGTGGAGAGTAGAGGCCA 362 30 100.0 37 .............................. CAGGGACGTAGATAAGATAATTCCCCAGCACCAGAGC 295 30 100.0 37 .............................. CTCAGGCTTCTTCTCCTTCTTTTTCCTGCTTGACATG 228 30 100.0 37 .............................. GAAACCGGGTGGTTAGGGTCAGGAATAAGGTCATCGT 161 30 100.0 36 .............................. ATGAACGCTTCGTTTAGGTCTACTGCGCCTTCTAAG 95 30 100.0 35 .............................. CTTAACCGGAAAGGCCTCAGGCCTAAGGCCATGCC 30 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 10 30 100.0 37 GTTGCAATAAGACTCGAGGAGAATTGAAAG # Left flank : CTTCATTGGATTTCCCTTAACGGAGCAAAAACAACCTTTTATTTAAGGTTTTTGGCGGGGATTTTGACGGGCGCGTGTTTAAAGCCCGAGATGACGCGTGGCAAGCAACTTCAGTCCTCAGCACGCCAAAACACCTTTATTGCTGAAATTCTGTATTATCCAGCCAGATTTTGTGGAGCTCTGGTCTGAGAGGGGTTTTGAAATTGAAAATTGGGCTTCAAAAATCATGACAATTTGTGCCAATGAACCACTAACAATGTGACGAAATTTTTTCGAACGAATGCAATAGACCTTTCAAAGGGCTTTATCTGGCTGAAATCCTATCAAAGTCGGATTAATTTTCAAAAGGCCGTCATGATTGCCTTTAAACTTATATTCCGGGATTCCGAGTGCCCGGGAGATGGCCGAGGCTCTAAGGCATTAACGGGGTTCTCCAGAAAGGCTTAAATATTGGGAGGTTCTCTTTCCTTTGTTGGGCGAAAGAATGAATTTCGCGCCCT # Right flank : G # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCGAGGAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 2 22611-21642 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNUS01000001.1 Thermococcus sp. 21S9 NODE_1_length_1870011_cov_45.224947, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 22610 30 100.0 37 .............................. AGGATAGCAACCAGCAGAGGCGTTAAGACCTGCAGGG 22543 30 100.0 37 .............................. ACATGGCGTTTAGCAATGGTGTAGTAGTCCTTACTCT 22476 30 100.0 39 .............................. AAAACTAACAACAAGTCCCGCATCGGTGAGCTTCTTCAT 22407 30 100.0 37 .............................. TCTTCTTGAAGACATCAGTAAGAACCTTCACAATGTC 22340 30 100.0 37 .............................. CTCCTCCTCCTGGGAGCTGGGACGGTTCTTATTGACT 22273 30 100.0 38 .............................. CTAAGGAAAAAGTGTAGAACGTAGCGGGGCATTTATGT 22205 30 100.0 38 .............................. ACAGAGACCATCTCACCAGCGTTCAAGCTCTCCGACAA 22137 30 100.0 36 .............................. TCAATCGTCTAAGCACCAACAACATCAATGCGGAGT 22071 30 100.0 36 .............................. TCAATCGTCTAAGCACCAACAACATCAATGCGGAGT 22005 30 100.0 37 .............................. GAGTGGTCCGAGGACGGCGGAGGCTAAGGCGGCTTAT 21938 30 93.3 38 ...............T.G............ TTTCTATGAGCTCAGCCGGCAGGTAAAGCGTCGTTACT 21870 30 93.3 37 ...............T.G............ CGAAAGGCGACTGAACAGCCAAAGCCCGTCGCGGTTA 21803 30 93.3 35 ...............T.G............ CCTGGTGGGTCCGCACGCGAAGTTTAAGTTTAAGC 21738 30 93.3 37 ...............T.G............ TCTATATTTGGTTTCAGTCTCTTTATTGTCTATTTTT 21671 30 93.3 0 ..........................G.C. | ========== ====== ====== ====== ============================== ======================================= ================== 15 30 97.8 37 GTTGCAATAAGACTCGAAGAGAATTGAAAG # Left flank : ATATGGAAGCTCCGGGAGCTCGGTTTTGATGTGTTATCACGCTGAAGCGGGTGGGTTTTTGAAGTGTGGGCATATCTTGCTCCCATTTCAGTTTTAATCTGTCCTGTGGAGTTTGGGAATTGATTTTTGCTTTTTCATTGGTGTTGCCTCTTGTAATACTTTATGCCATTTAATGTAACTAATTTTCTTCGAAATGCTGAACAAAGCCCCGGGAGTCTATGGATTTGGCCAAAACCTGACGAAATCATGTTTCTCTGGGTTTGGCCTTCTTAGTTGGGTTTGTCTTAAATTTGCTGGCTTATTCTGGCTCTGAAAAACTAATTATTCTCAATGGGGGAGAAGTTTTTGAGTGCCCGTTGAACCTCTACACGCTCCTATTTCCCTTACGGGAGTTTTAATTCACGGGCTCAGGTGGCTCCTTTTTGGGAAATCTCCAGAAAGTCTTAAATATCCGGTAATCCTTCTTTCTTCGTTGGGCGAAAGAATGAATTTCGCGCCCT # Right flank : CCACCTGGGAAACCCTTATCAGCCGTGGAGGTTTTCTTATCTCGGTGGTTTGAATGAAGGCTAGGGTGATTGAACGCTTCCGGTTTGAATCCGCTCACGCGGTTCTCATCGACGGAAAGCCGGAGGAGATTCACGGGCACACCTTCCGGCTTGAGATTGCGGTTGAGGGGCCCCTCAGAAACGGCTACGTGATTGATTTCGTCGAGCTGAGGCGCATTGTGGAGGAAATCATCGGAAGGCTCGACCACAGGAACCTCAACTCCCTCTTCGAGAACCCAACGACGGAGAACGTCGCGCTCTGGATTGCTGAGCAGGTTAACGCGAAGCTCCCGGAGGGCGTTTCCCTAAAGCGGTTGACACTCTGGGAGGGAGACGAGAACGGGGTCGAACTGGAGTTCTGAGAATTCTTCTGGCAAAAACTCACTGCACGGAACTAATTCCTCTTGGCTTTCATTTCCTTAACGCTCTCCGCCATGGCGAAGCCGTTGGCCTTGTCAAAG # Questionable array : NO Score: 9.15 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCGAAGAGAATTGAAAG # Alternate repeat : GTTGCAATAAGACTCTAGGAGAATTGAAAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 3 363157-361717 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNUS01000001.1 Thermococcus sp. 21S9 NODE_1_length_1870011_cov_45.224947, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 363156 30 100.0 37 .............................. TCTTTGGCCTCCACAAAGACCAGCTTAATGAAATCGC 363089 30 100.0 39 .............................. ATGCTTTCACGACTTCTCTAATACGCTTGACAGAATATC 363020 30 100.0 36 .............................. GCATAAACCACCAAAGAAGCGAGGAAAGAGGCCCCA 362954 30 100.0 37 .............................. GGGCGAGGAAAAAGCCCCAGTGGAGCCACTTCCGAAC 362887 30 100.0 36 .............................. GCATTAGGAGGCCAATAATAGCCACCCAGTCCCCAG 362821 30 100.0 36 .............................. ACCTTAAGAAGTATTTTGAGGAGGAGAATCAGGTTC 362755 30 100.0 37 .............................. TGAACGCCTTTTCAGCCCACCAATCATAAGAGTTGTC 362688 30 100.0 37 .............................. AGATAAATCTCCTTCCCCATCGTTAAACCCTCCTCCA 362621 30 100.0 37 .............................. AATCCCGGCTTTAAGGACGGTGTTAACGCTGTCGAAC 362554 30 100.0 36 .............................. GGCGTTCATGGAAGTCTTAAAAGCCCTGGTAGAGTT 362488 30 100.0 37 .............................. GGTCCTCCGCTGAGGCTCCAGAAATCAGGGCGAACCC 362421 30 100.0 36 .............................. ATGAGCAGGCCAACCTCACCCACGCCCCAGGCCGAA 362355 30 100.0 39 .............................. TTATCGTCTATTACTCCTATTCTGTCAGCATTTGCCCCA 362286 30 100.0 38 .............................. TTCGGCTGCCTTCCGCAAAATTTCACCTAGGCCCATGC 362218 30 100.0 39 .............................. GAGTTTGTTTGCCCACCGACGACTACATGATTATTCAAA 362149 30 100.0 37 .............................. AGCAATCTGAAGAGCAATGCGCTCAAACGGAATAACC 362082 30 100.0 37 .............................. TTAATTCGGCCCTGGAGAGAACCCTCCAGAGCTCCGT 362015 30 100.0 36 .............................. TCTAACTATAAAAGTAGAAGAAACAAGGTGAGCCTC 361949 30 100.0 37 .............................. GTTATGAAGCACAAAGTAAAGACCCACCAGGAAGGCG 361882 30 100.0 38 .............................. GAGGTCTTTTCGCTATCGCGGAGGCGTCAGCTCTTGGA 361814 30 96.7 37 .............................C TACTTCCTCGCAAGGCAGTCTTCCTTCGTGAGAACCT 361747 30 93.3 0 ...............A.............A | A [361721] ========== ====== ====== ====== ============================== ======================================= ================== 22 30 99.5 37 GTTGCAATAAGACTCGAAGAGAATTGAAAG # Left flank : GCCCCGAGGACAAAGGACGGCGTGCCGATTGAGTGACACCTCGACGAGTGCTGTTCTCCATAATTTTTCGGCTCGCTTTGACCTTCCTTTGGGGGATGCCCTTACAGGTCCGCCCCGGAAATCGATTTTTGTGGTTATGTAGACGTAACTTATTGGAATGATTTTGTTGGTCTATGTAACGAGATATTTTCAGACAGTCTTAATGATGCATTCTCGCGCCTAAACGACCGTAAAACCTGTTTAAATCGAATTGTTTTTGAGAGAAACGCAGGATAGCCGTTAGACGACCCAACAGAGGCCAGTGACACCACAGGAAATCGTGGCAAGTTCTCTACCTGACTGTGGGAAGCGTTCATCAAGTTGCTCGCGCTCGTGGGAGTGCCCATCGAGCGGTTCGGATAAACCACAAAAGGTCCGGGTTAAAGCCCGATTTCCAGAAAGGCTTAAATATTGGGAGGTTATTCCTCCTTTGTTGGGTGAAAGAGCGGGTTTTGCGCCCT # Right flank : GAAAACCCCCGCTCACTCTCTCCCCTTCCGTCTCCCCCATCCGAGCCTTGCGGTCAGGATTTTCTCGCTGGCGAAGACCCTCGCTGTTACGTAGAGCGTTGCACCGGCGACGATGGCGAGGTAAGCTATGCTCGCGCCGAGGGCCGTGTAGTCCTTCGCTATCACGTAGCGGTAGTCCACGACAGGGTGAGTGAAGGGGCTGGCGAGGAGCAGGTACTTCCAGAGAGCCGGGAGCTGGCTGATGTCAACGAACATCAGGACGAACGACGGGAAGGCGAGGGGCAGTATGACCGAGCTGACCACCGTGTTGGCGCTCTGAACGTCCTCGGCGAAAACCGCGAGGAGCATCGCAAGGCTCAGCGAAAAGGCTATCGTCAGGAAGACGACGATGCCGAAGAGTGCCATGCCTGTTGGTGTTATCGAGAGGCCGAGTTCACTCAGCGAAACGCCCGTCTGGGTTCCGAAACCCGCCATGTACTGCTTGAGGCCAATCATATAAG # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCGAAGAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : NA // Array 4 706713-707954 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNUS01000001.1 Thermococcus sp. 21S9 NODE_1_length_1870011_cov_45.224947, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 706713 30 100.0 37 .............................. GTCTCATCTGGGGTTGGCTCGTGGCATTCTTCCTCTA 706780 30 100.0 39 .............................. TGTTCACGAGGGTCCTTGTTGTCGTCTCTGTGAATCTCG 706849 30 100.0 40 .............................. GGAAACTACCTCGCTTTCTACATAACTGCAGAGGACTTCA 706919 30 100.0 37 .............................. CTTCTAAATCGGACGGCCTATACACGATAGTTTTCAC 706986 30 100.0 37 .............................. ACATCTGGGGTCTCTCGGAAGAGCGCGCGACGGAAAT 707053 30 100.0 39 .............................. TTGAAGCCCCTCTCTACCCATCTGAGCGAGTAGCCACCG 707122 30 100.0 37 .............................. AACGAAAAAAAATACAAGCTCGCAATCCGCGACCTGG 707189 30 100.0 36 .............................. TTTGAGGCCCTCGACGAACTGCTCAAGGTCTCCCGC 707255 30 100.0 37 .............................. AGGTAAATCATGCCCAGGCCTCCCAGGACCAAAATGG 707322 30 100.0 36 .............................. AGAAGCTTAGCGATAGCTTTTGAAGAGCGGAAACCA 707388 30 100.0 37 .............................. AGAGCTGACGCCTCTTCGACATCGCGAAAGGCTCTGG 707455 30 100.0 38 .............................. CAAGAAACGCGCGAGAAAACCCGAGGAGGCGGGCTCAG 707523 30 100.0 36 .............................. ACCGCTACAGTGTACTGCTGTAGCTTAGTGATAAGT 707589 30 100.0 36 .............................. TCGCGTCAAACCAGCTCATCAGCCCCTTTAGATAGT 707655 30 100.0 37 .............................. GTGAAGGGGGGAACAGCGATGAGAAGGGCAGGATTGG 707722 30 100.0 38 .............................. TTCTATCTCCTGAGCCCAGAGACCGGCTCAAGCGAGCT 707790 30 100.0 37 .............................. TGAGGACAATCTGAAGAAGGTTTTGGAGGGATGATTT 707857 30 100.0 38 .............................. TGGGGTTTTCGGGGGGGTGTGGCCTCTTTGGCTACACG 707925 30 93.3 0 ...........C...C.............. | ========== ====== ====== ====== ============================== ======================================== ================== 19 30 99.6 37 GTTGCAATAAGACTCTAGGAGAATTGAAAG # Left flank : GGAGAACGGAAAGCTCTGAGCCCTTTTTCTTTCTCTCTCACTTTCAGGTTTCTGTATTCCTTGGAAAATGGCTTTTTGTAGGGGATTTTGCTTGGAACGGCGTTCTTATGTCGTTGGAAATTGATTTTCGCTTTTTCAAAATCGTGACGTTTTGTTTTATTTTTGATAACTAATGTAACGGATTTATCTTGCGATTCTGGACAGGGACTTCCTTAATCCCGAATTTCTCTACAACCTGTTAAAAACACTTTGTTTTTTCGTTAAAGCTTTTTCAACATTAGATTTTTGAAACACTCGTCTAATTAACTCCTGGAAATCTCACGTGCATTGTTGTCTATTCTGTTCTTCGGAAGGTTTTTGATTTGTACTGCCCTGTTTGGGGTGGCTCCCTTCTCCAATTCCAAGGCATTACAGACGTTCTTTTCAGGGGATTTCCAGAAAGGCTTAAATATTGGGGGCCATTCTTCCTTTGTTGGGCGGAAGAATGAATTTCGCGCCCT # Right flank : GAAGAGCAGGCCACGGACAGGACAACCTGAAACCTAAAACTCAAATCTCAACCCACGTGAAGTCCCTCGCGACCTCGCCCGGAATCCCTGCTTCCCTGACCTTCTTCTCCAGAACTTCATGGGGGTAGTTGCTGTGACTTATGTGCGCGAAGACGGTGTAGCCTGCCCCGACCCTCTTCGCCAGTTCTATCGCCTCCCGGACTCCAAGATGCGAGCAGGGAATGGCTTCCCTGTGGGTCATCTCGGCTATAAGCAGGTCGGCCCCTTCCATGAGCTTTATTGCTCTTTCATCCTTCAGAATCTCCGGCCCGGTGTCACCGGTTATCGCTATCCTCTTCCCCTTCACCTCGATGACGAAGCCACCGGCAGTTACCGTGTGGGTTACGGGGAAATGAACTACCCTCATCTTTCCGATTCTCGTCTCCTCCCAGAACTCAAGCTCGTCGTAGCTCCACTCGTGTCCCTCTGGACTTTCTGAGCCGAATGCAAGCTTCGCCAAG # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCTAGGAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 5 1363481-1364318 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNUS01000001.1 Thermococcus sp. 21S9 NODE_1_length_1870011_cov_45.224947, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 1363481 30 100.0 37 .............................. CCGGGGAAGGGAAAGACGACCCTCCTACTGAACCTAA 1363548 30 100.0 36 .............................. CGTATTTCTTGCGGAGCTCAAGCAGAGCCTTTAACT 1363614 30 100.0 37 .............................. TCAATGCTGACCGGGCCCTGTCCGCTCGGAAGGGTAA 1363681 30 100.0 39 .............................. CAGGGAATACATTGAAGCGTGGGGGCTGAAGCCGACAGA 1363750 30 100.0 37 .............................. GCGTTCAGTTTCAACTCTGACGCTTCTAATTCTCCCC 1363817 30 100.0 36 .............................. GCTCTTTAGCCGGAATGAAGACTTTACGGCCCAGTT 1363883 30 100.0 38 .............................. TTCCGCTCTGGTCCGTTACTCTCACCGTATTAACGCCG 1363951 30 100.0 37 .............................. TTTAGGCAGTTCAACTATGGAATGGCTTATACGTGGT 1364018 30 100.0 38 .............................. TCGCTCGGATACTATGAGTTTTTCGGGGCGTTTTTCGT 1364086 30 100.0 37 .............................. CAGCAGAAATGGGATGGTCCGGGTCGGGAATCAGAAC 1364153 30 100.0 38 .............................. TCCGTATAAATAGCACGGGGCATTATGCGTGCAATAAA 1364221 30 100.0 38 .............................. CCTTTATCACCGACTCGACGTACCTCATGCTCTCACCA 1364289 30 83.3 0 ...............A.A..A...CA.... | ========== ====== ====== ====== ============================== ======================================= ================== 13 30 98.7 37 GTTGCAATAAGACTCGAGGAGAATTGAAAG # Left flank : TGGAGTTTGAAGTCGAGGAATTTTAACTTTTCCGATACATCACGCTCAGAACGCTCTGATTTGAGATAAAGACCATCATAATGGAGAAAACGCAAAAACTTCCTTAGATAATCACCAGGAAATCGATTTCCATGCGCCAAAAACTGGAACGTCTTGTTACCTCTTTACGACAAAATGTTTCGAATTTCCTTCGAGGTTGCGAACGTAAGGTTCGTATAGCCCGAATTTCCGCAAGCCCTGCTTAAACCCGGCCATTTTTCGTGGTAAGTGATTTCACCCAGCCTTTCAGGGAATCGCGTATGCTAACACCTTAGCATTTGGCAATGCCAATTTGGGGTTACTGCATACGGGCGAGACACCGCTTTACCATATTTTTAGAGCTTTTTGTCGACCCGTTTCTGCCAACAAGTTTTCCCCATATTAGCATTAATCTCCAGAAAGGCTTAAATATTGGGGGCCATTCTTCCTTTGTTGGGCGAAAAGAATGAATTTCGCGCCCT # Right flank : GCTCCGTACCCTTTGAGCTAAGTTCTAAAATCTGAGCAGAGAAAAAAGGGCAAAAGCCCTCAGAGAAGCATCCTCGCGTCGACGGCAACGGCGCCGTCCTCGTAGGCGAAAATCGGGTTGATGTCGAGCTCCTTAATCTCGGGAAGCTCAAGGGCGAGTTCGCCGACCTTGACGATGATGTCGGCCAAAGCCTCGATGTCCACCGGCTTCTCACCGCGAGCTCCGGCGAGAATCGGGTAGGCCTTGATTTCCTTAATCATCTCAAGGGCTTCCTCCTTGGTAATCGGGGCGACGCGGAAGGAAACGTCCTTGAGAATCTCGACGAAGATTCCACCGAGACCGAACATGATGGCCGGACCGAACTGCGGGTCGCGTATCATACCGACGATAACTTCCTTGCCGAGCGGGAGCATCTTGTAGATTATGACGCCCCAGAGGTCTGCGTCCGGCTTGTACTTCTTGGCGTTCTCCATGATGGTCCTGAAGGCCTCCCTCGCCTC # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCGAGGAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 6 1625390-1623749 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNUS01000001.1 Thermococcus sp. 21S9 NODE_1_length_1870011_cov_45.224947, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 1625389 30 100.0 38 .............................. CGACGTCATCTCCAGGGCCGAGGCGGAGCCAGACCTCA 1625321 30 100.0 37 .............................. AATTACTTCTGGTATGAACTTTTCTGGCGGGTTACGA 1625254 30 100.0 39 .............................. GCATTGAAATATACTACACATACGAAGGACGTAACTATG 1625185 30 100.0 37 .............................. TTCACATAGAAAACGCCGAGCGTATCTCCATCCTTCT 1625118 30 100.0 37 .............................. AGGCTTTTGACTTCGACGAGCTGACCCGTATCACCGT 1625051 30 96.7 36 .......................C...... TCAACTGAGGAGATACTCAGGGAGAGGCTTCGAGCG 1624985 30 100.0 37 .............................. CTCGTACCCCTCTTCATCCTCACCCCCGTACAAGAGG 1624918 30 100.0 37 .............................. AGGGCTGGTCAGCGCGGGCTATATTAAGCTCTGGCAA 1624851 30 100.0 37 .............................. CGTTAATGAGTTTCTCAATCGCTAAGGCCTTCCTACT 1624784 30 100.0 38 .............................. CAGGAGAGAAAGTTCCTCTCGAAGAATTGAGAGTTCAG 1624716 30 100.0 38 .............................. CTTGAGAGACCCCCTCGACACGGGCCTGGGGTAGGGAG 1624648 30 100.0 37 .............................. CAAGGAGCTTGCGAGCGTCGGTGGTGGGCTTGATGTC 1624581 30 100.0 36 .............................. AGAGCCTCTCCGGGACGAAAATCTCAAGGGCCTTGT 1624515 30 100.0 36 .............................. ATGTTGTTAAGCACTGTTAGAGCTATGTCAATCGCT 1624449 30 100.0 40 .............................. AATTTTCCTCTATTAGGAAAATGCGCGGAAATTCAGGGAA 1624379 30 100.0 37 .............................. GGGGCGAGGTCCAAGGCCTCTGCCACCTCTGCGGGAA 1624312 30 100.0 36 .............................. ATTTGGTATTTTACTACCGACAACTTTGGAGGGATA 1624246 30 100.0 37 .............................. CAGTGATTGCGTCAGTCGCAATTCCAGGGCTGTCGAT 1624179 30 100.0 36 .............................. TCAATAAGACATTAGAGCATGAGCCTTTAAAGGGTT 1624113 30 100.0 36 .............................. ATGTAATGATTGAAGAGGGGGAAACTCACATAGGCG 1624047 30 100.0 38 .............................. TGATGAATTGACGCCCTTAGCCTACCCGTGCGCACCGT 1623979 30 100.0 38 .............................. CTCTTCTTCTTTGTGCGCTCCGCTTTCATCGTCCAACC 1623911 30 100.0 36 .............................. GGCTAGAGCTGCAGCGTCAGGTGCTCCCCAGTTCTC 1623845 30 100.0 37 .............................. CCGAAGACGCGACGGACTTATGGCGGGAGCTGGATTA 1623778 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 25 30 99.9 37 GTTGCAATAAGACTCGAAGAGAATTGAAAG # Left flank : TGTTCACTAAATATGCATGGTTTGACATAAAATCGGCCGGCACTTTTCTCCGGAACATCACGGTGAGAACGGGCCGAGACCAGAGGGGCCCCGTTAGAGAGGAAAATTCAAAACGAGCGGGCGGAAGAGGCGGTTGGAAATCGGATTTTACAAATCTCAAAATGCGACATAGTGTTCCAGATTTTCAGTTAAAATGTTACGAAGTTTTTTCGAAGCGAATAGAGCAGATACGAGCGGGGAGCTTTTCACTGGAACCCTGATGGGGTTCAATAATTTCACCCGACAAAACCAAAACTGCCTCAAAACCGGCATTAAAACGCTCTCGTGAGTCTGGAAATCCCAACAGTGCCTTCCGGTCAAGCGTGAGGACGGCACCCACTCCCGCGAGAGACAACGTGGCGGTCAGCACGCCGACCCGGGTAAACGCGGGTTTCCAGAAAGGCTTAAATATTGGGAGGTTATTCCTCCTTTGTTGGGTGAAAGAGCGGGTTTTGCGCCCT # Right flank : AGCTCCTCTGTATTGACACCGGGGACGAGAATGAGACGTTGCAATAAGACTCTAAGACCCGAAGAAATTTCTCAGAACAAAATAGGGCATCCAAGGAAAAGGAAACCTCAAACCTTAATCCTCTTCCAGACCGTCCCCTGCGGTGTGTCCTCCAGCTGGATGCCGAGCTTTCTCAGCTCGTCCCTGATTCTGTCGGCCAAATCGAACTTCCTCTCCTTCCTGAGCTGACTCCTTACCTCAACGAGCAGGTTTATGAGTTCCTCCTCGTTTCCGGTCTTCTGCTCCTTAAAGTAGTCCTCGAACAGGCCGAAGACCTCGCCGACGTCCTTGAAGAACTCCCAGGCCTTCCTGAGGATGCTCTCCTTCGGCTTTTCCACCTCGGTGAGGTATCTATTGATAGCGTTGCTGACCTCAAAGACCGCCTTCAAGGCCTCGGCCGTGTTGAAGTCGTCGTCCATCGCCTCGTAGAACTTCCTCCTTGCGTCCCTTATGGCCTCGTA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCGAAGAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : NA // Array 7 1870012-1868637 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNUS01000001.1 Thermococcus sp. 21S9 NODE_1_length_1870011_cov_45.224947, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 1870011 30 100.0 36 .............................. ATGAACGCTTCGTTTAGGTCTACTGCGCCTTCTAAG 1869945 30 100.0 35 .............................. CTTAACCGGAAAGGCCTCAGGCCTAAGGCCATGCC 1869880 30 100.0 37 .............................. TTGAAGCTATGAACTCCAGGAGAGCGAGGCCCATCTC 1869813 30 100.0 38 .............................. TGGGACCTTTTGGCTTCACCCATATGATGGTCTTCTGA 1869745 30 100.0 36 .............................. ACGGACTTTCTCTTCCAGCTGAGCGATAGGAGGGCT 1869679 30 100.0 37 .............................. AGTTTCGCATAATGATATTTCCAGCTCGTTTTTATCG 1869612 30 100.0 39 .............................. CGATTGTAAATGCCCAGTTGTCCAACCCGAAGCGCTCCT 1869543 30 100.0 37 .............................. ATCGCTACAGGGTGGACGTGGAGCCCATCCTGGTGAA 1869476 30 100.0 37 .............................. ATTTGAGCTCCAGCATAAGCTCCACCCAGATAACCAC 1869409 30 100.0 37 .............................. GACGTTGACGACTATAAAGCCCGGGCGATAGCATCTG 1869342 30 100.0 37 .............................. GTAGCTGGCATTTTGCTCGCGATGTTCTTCGACTACG 1869275 30 100.0 38 .............................. GCATCAGCGAGCTTCTTCATATGATAGCGAAGCGTCCT 1869207 30 100.0 38 .............................. AGGTAGAGGGTTGGCGTTTGGAGGTATCCGGAACCGTT 1869139 30 100.0 38 .............................. TTATCGTTCTTCCATATCTCGGCCTTCCCCTTGATATA 1869071 30 96.7 37 .............................T GTACAGGAGCATCTGGGAGATTGCCAGGGGACTGGCT 1869004 30 93.3 37 ...............T.............T CTTCTTCAACCGCTCCAGCTTCCGCTCTAAGCGCCTT 1868937 30 93.3 37 ...............T.............T AACCACCCAAGCCTGGTAGTGGTCCCTGTCCTTGAAT 1868870 30 96.7 37 ...................G.......... CAAAATCATCAGCATAAACGAATGGGTCAGTCCGAAA 1868803 30 96.7 38 ...............T.............. AGGGGAAGCGCCTGACCAAGCACGAAAGGGAGATACTG 1868735 30 96.7 37 .................A............ TTAATCGCGTTTATGATACTGTCAAAGATGCTCTGAA 1868668 30 86.7 0 ...............A.A....CC...... | A,A [1868642,1868648] ========== ====== ====== ====== ============================== ======================================= ================== 21 30 98.1 37 GTTGCAATAAGACTCGAGGAGAATTGAAAG # Left flank : | # Right flank : AAGATTAAAAAGCTCAGAAGAGCCACTGGTTCTCGATACACTCGTCGCACGGAGGCTTCTCGCCGGCTATCGCCTTGAACTTCTTGTAGATACACTCCGGAAGGCCGAGAGGACAGCGGTCCGGGTACTGGCCGGGCCTGACCTTCGTCGGGTCGAGCTTTATCTTGATGTAGGCCTCGTACTCCTCGACCTTCTTCCAGGGCAGAACCTTCGCCCCGTAAATCACGAGTCCGTCGTAAATCTTCGCGTAGTCGCCGATGACGGCGTTCTCCTTGATGATTACGTCCCTGCCAACTACAACTCCCTCGCCGAGTATCGTGTCCTTCAGCTCGGCGCGCTCCTTGATTATGTCGCTACCGATGAGGACGGAGCGCTTGATGTAGGCTCTGTCCTCTATCACTGTGTTCGGGCCGATGTAGGAGTAGGCCTTAATCTTGACGCCGTGCCCTACTTTGACGCCCTCGTCAATGTAGACCGGCCCCTGAATCTCTACATCTTCT # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCGAGGAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA //