Array 1 2905-70 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGTK01000004.1 Klebsiella pneumoniae strain MGH168 scaffold00004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2904 29 100.0 32 ............................. TCGTCTGAGTTCCGGCTTACGCCGTGCCGACA 2843 29 100.0 32 ............................. TCGTCTGAGTTCCGGCTTACGCCGTGCCGACA 2782 29 100.0 32 ............................. CGGCTGCGCTGTTGCACATAGCCGCTCAACCT 2721 29 100.0 32 ............................. CGGCCGCGTTCTCCCCTGTGGGAGGGGTGGGG 2660 29 100.0 32 ............................. GAATTTATTGGGAGGTGATAGCTCTGGCAGGT 2599 29 100.0 32 ............................. GGTATGCAGGGCACACGCCAAAATAATTTTGC 2538 29 100.0 32 ............................. ATACGCAGTCATTAATCGCGGGTGTTACGCAA 2477 29 100.0 32 ............................. CCTGCTGTCATTTCCTTCGGCACTACCGGCGC 2416 29 100.0 32 ............................. TTACACAAGAGAAGCACTGACAACCATTCACA 2355 29 100.0 32 ............................. CCTAAATTGCCAATTTTCCTTGAGCGCTGGTA 2294 29 100.0 32 ............................. CATCGCTTTCCATCGCAGCTTTTTCCAGGCGC 2233 29 100.0 32 ............................. GTGACGCGCTGCAGTTTGCCAAAACCCTGCCA 2172 29 100.0 32 ............................. ATTTTGCGTACGCTCTCCCACAGCTGATCGTG 2111 29 100.0 32 ............................. TTTCCGGCAGCGTAGCCAACCCGGCCAACCGT 2050 29 100.0 32 ............................. CGGATTAAACGTAAGGCCGCGCGCTGGCGTAA 1989 29 100.0 32 ............................. GTGGTTTGTTACCGTGTTGTGTGGCAAAAAGC 1928 29 96.6 32 A............................ GGTTTATAGAGGCTGAGGTATTCACAATGCGC 1867 29 100.0 32 ............................. GGCGCCGGCCTGATCACTATCGGGTAACGGTG 1806 29 100.0 32 ............................. GGCCTGAACCAGAGCACGATCTACACCTGGAA 1745 29 100.0 32 ............................. GATCGATCGTTATTGTTGAACCGCACTATGGT 1684 29 100.0 32 ............................. CTTTTAATAATATCATCGGCAATGTCCTTATC 1623 29 100.0 32 ............................. CGGGACCGGATCCGCGTGGGCGACCAGGATTA 1562 29 100.0 32 ............................. CACCGATATTCAGTGCGCCAACGCCATAGCAA 1501 29 100.0 32 ............................. GGCCCAGTAATCCCCGCGAAGTCCTGAAGACG 1440 29 100.0 32 ............................. GTTGCGAAGCCTACGTCCAGATCGTAGAGATA 1379 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 1318 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 1257 29 100.0 32 ............................. CAGATACCAACGGTTACTACGGCAATCAGCAC 1196 29 100.0 32 ............................. AAGGTTGACCTGTTGTCGGCAACCATCGAGCC 1135 29 96.6 32 .........A................... GAGGCGCGCGTTGTCGTCGGTGAGATGCGCGA 1074 29 96.6 32 .....A....................... GCCATTCGTGCTTCTTCGCTTTGCTGCATCCA 1013 29 100.0 32 ............................. GAATATAAAACCAGATTCCATATAGCCCTGTG 952 29 100.0 32 ............................. CCGGTTACGGGGATGACTGCAATTCGCTCCTG 891 29 100.0 32 ............................. TACAGGACGCACTGGCTGCGAAGCCGTTCGCG 830 29 100.0 32 ............................. TCGCTCTGTGTCATACGGTTATTAGCCCTGGA 769 29 100.0 32 ............................. AATTTGCTCATAGAATTGAGACAGTAAACTTT 708 29 100.0 32 ............................. CCGAAATGGATACCGCCGCGATTGAGTATTCG 647 29 100.0 32 ............................. GGTCAAAAGGTTCATTCGAGCATCGGTATTCG 586 29 100.0 32 ............................. GGTCAAAAGGTTCATTCGAGCATCGAGTTGCA 525 29 100.0 32 ............................. GCGATCGTCATGGATATCACTGCCGTTCCGTC 464 29 100.0 32 ............................. TTTCCGGCAGCGTAGCCAACCCGGCCAACCGT 403 29 100.0 32 ............................. CGGATTAAACGTAAGGCCGCGCGCTGGCGTAA 342 29 100.0 32 ............................. GTGGTTTGTTACCGTGTTGTGTGGCAAAAAGC 281 29 96.6 32 A............................ GGTTTATAGAGGCTGAGGTATTCACAATGCGC 220 29 100.0 32 ............................. GGCGCCGGCCTGATCACTATCGGGTAACGGTG 159 29 100.0 32 ............................. GGCCTGAACCAGAGCACGATCTACACCTGGAA 98 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================ ================== 47 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ATTG # Right flank : TGTCTCTTATACACATCTAGATGTGTATAAGAGACAGGTGCTAACGCTGGGTGTTCCCCGCGCCAGCGGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-5.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3339358-3338417 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGTK01000001.1 Klebsiella pneumoniae strain MGH168 scaffold00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3339357 29 100.0 32 ............................. AAGGTTGACCTGTTGTCGGCAACCATCGAGCC 3339296 29 96.6 32 .........A................... GAGGCGCGCGTTGTCGTCGGTGAGATGCGCGA 3339235 29 96.6 32 .....A....................... GCCATTCGTGCTTCTTCGCTTTGCTGCATCCA 3339174 29 100.0 32 ............................. GAATATAAAACCAGATTCCATATAGCCCTGTG 3339113 29 100.0 32 ............................. CCGGTTACGGGGATGACTGCAATTCGCTCCTG 3339052 29 100.0 32 ............................. TACAGGACGCACTGGCTGCGAAGCCGTTCGCG 3338991 29 100.0 32 ............................. TCGCTCTGTGTCATACGGTTATTAGCCCTGGA 3338930 29 100.0 32 ............................. AATTTGCTCATAGAATTGAGACAGTAAACTTT 3338869 29 100.0 32 ............................. CCGAAATGGATACCGCCGCGATTGAGTATTCG 3338808 29 100.0 32 ............................. GGTCAAAAGGTTCATTCGAGCATCGAGTTGCA 3338747 29 100.0 32 ............................. GCGGCGTCAGGTGTGTGGCAGAAAATTATTGC 3338686 29 100.0 32 ............................. TCGTCTGAGTTCCGGCTTACGCCGTGCCGACA 3338625 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 3338564 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 3338503 29 96.6 29 ............T................ GGGTTCACTTGGGTGAAACTGAACTAACT 3338445 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================ ================== 16 29 97.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGCAGATACCAACGGTTACTACGGCAATCAGCAC # Right flank : GTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTCTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCTTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTGGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATTC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3343251-3342793 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGTK01000001.1 Klebsiella pneumoniae strain MGH168 scaffold00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3343250 29 100.0 33 ............................. GCCCGCGCGAACCTGGGGCTGGGAGATTCAGCG 3343188 29 100.0 33 ............................. TTGGCGGTCGACGGTGGCGAACTGCCTGATCAG 3343126 29 100.0 32 ............................. GGGGGGAAATCAAGGTCAAAGTTGAGCTGGAT 3343065 29 100.0 32 ............................. CCTCGATCATTCTTGCCAGTTGGGAGTCGGAC 3343004 29 100.0 32 ............................. CACCTCGCCTATAAATCGTACCAGCCTGACAG 3342943 29 100.0 32 ............................. GCATCGCTCGCCTCGTTCGGTGCTAACGCTGG 3342882 29 100.0 32 ............................. CGGCTGCGCTGTTGCACATAGCCGCTCAACCT 3342821 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 8 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCGTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGTG # Right flank : CGGCCGCGTTCTCCCCTGTGGGAGGGGTGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [11.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //