Array 1 2645129-2644036 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP064936.1 Treponema peruense strain RCC2812 chromosome, complete genome		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence             	Insertion/Deletion
==========	======	======	======	====================================	============================	==================
   2645128	    36	 100.0	    26	....................................	CGTGATCCGTTATTGAAATCTCGATG  	
   2645066	    36	 100.0	    26	....................................	TGCAAGCAGTTCAGATTCTGCGCTTG  	
   2645004	    36	 100.0	    26	....................................	CAAGTATTGACGCCTCTGTATATGCT  	
   2644942	    36	 100.0	    25	....................................	AATTGTTCTTATCTGAATATGCAGA   	
   2644881	    36	 100.0	    27	....................................	CAGTAAACGGCCAAAATAGCTCTGATC 	
   2644818	    36	 100.0	    27	....................................	AGTATGCTACTAAAGACACAGATTTTG 	
   2644755	    36	 100.0	    26	....................................	CTTGAAGCGAAAGCAACACGCAGCGC  	
   2644693	    36	 100.0	    25	....................................	TTGGAGCGGTAGGTGGTGCAGTTGA   	
   2644632	    36	 100.0	    25	....................................	TGGATATAAAGAAGGTCGTTAAATC   	
   2644571	    36	 100.0	    26	....................................	TACTGCGATTGTTCAGTCATGTCTAA  	
   2644509	    36	 100.0	    28	....................................	AATGAAACAATGTTCGGGTGTATTAGCA	
   2644445	    36	 100.0	    25	....................................	TGTTAACTTTTTGTGTTCGTTGGGG   	
   2644384	    36	 100.0	    27	....................................	CTGGAGTTTTGGTAATGATGGAAAAAC 	
   2644321	    36	 100.0	    25	....................................	GAAGGTGCAGAAGAGTACAAAATAA   	
   2644260	    36	 100.0	    28	....................................	TGTTGATTTCAGTGGCAGAGGTGAATTG	
   2644196	    36	 100.0	    26	....................................	CGAGAAACACCCATTCCATGACCAGC  	
   2644134	    36	  97.2	    27	...............G....................	GCGAACCTGTTATCTCTGTTATTCAGA 	
   2644071	    36	 100.0	     0	....................................	|                           	
==========	======	======	======	====================================	============================	==================
        18	    36	  99.8	    26	GTTTAGAACCCAAATAAAATTTCTACTGTTGTAGAT	                            	       

# Left flank :   GGAAAGAAAGTCGTTAGTTTTCCTTCCGTGGCAAACTAACTTATGCAGGTTTTCTCTGAAAAACTGCGATTAGACCGCCCATCCATGGCGAAAAAAGGAGAAGAAAATGTTGATTGTCAGTTATGATATTGCAGATGATAAAGTCCGTACACGGTTTTCAAAGTTTTTGCAAAAGTTTGGATTTAGATTACAGTATTCAGTATTTGAAATTCATAATTCAGAACATATTTTAAAAATCATTATGAATGAAATTGCAAATGTATATGAAAAGACCTTTACAGAAGAGGATAGTATTGTTATATTTAAGTTGAGTGAAACATGTGAGAAAATTTCGTATGGATATGCAAAAAATAATTCCGAAGATTTCATCTTGGTTTCATCATAATTGCAGACCCCAGGTCTTACTGGAGTTTTTACCGGAATCAGTAATAAATTTGTTGTTTTTCTCGGTAATATATGCGAAAAACCGTTCTAAACAGTACTGTTGTACAAAGACTAGA
# Right flank :  TCAGTAAAAACCGTAAGACTGAACAAACAAATAATGTCAATATTACAAAACGCCAAAAAAACGCGTAATGATATTTATTCTGAACTCAATGAATAATATTATGACCGGTATTCTTCTGCTTCGTTAGTATAAGAACGAGCTTCCCGAAAAAAGCCCGCTCTTATACTGCTTACTCCATCGTGTAAATAACAAAGCCCTTTGCTTCGACACTTGCGCCGTTAAAGTACCGTTTGCTCAGAACCGTGTCTTTTTGTGAAAGTGAAGCCGCGCACGCTTTGTTTCCAAAGTTAAAGATTCCGGCTACGCGTTCACCTGTTGTTTCATCAGTTTTTATAATTCTTACAACGCGTGACTCTCCGGCATTTGCGCTGTCTTCATCTTTGTACACAAATTCAGTTTTGTTTGCTGTAATGGCGGGGTGCTTTCTTCTTAAAGAAATAAGGCCCTTCATAAACGAAAGTTCTTCTTTGTAAGTGCCCGCCTCAATTCCGTCCCAGGGC

# Questionable array : NO	 Score: 3.05
# 	Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.19, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTAGAACCCAAATAAAATTTCTACTGTTGTAGAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:72.22%AT]
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  NA [0.00,0.00] Score: 0/0.37
# 	Array degeneracy analysis prediction:      R [1-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [71.7-66.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,0.41   Confidence: MEDIUM] 

# Array family : NA
//