Array 1 75449-75904 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABEQK010000001.1 Gluconacetobacter takamatsuzukensis strain LMG 27800 contig00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 75449 29 100.0 32 ............................. GTGGAGCGGCTGATCACGACCTACCAGGAAAA 75510 29 100.0 32 ............................. GCCAGGAACATGTCCTGATCGATCGATTTCAT 75571 29 100.0 32 ............................. TTGCATGTGAAAAACAACACGGTCGAGCCCGA 75632 29 100.0 32 ............................. GTCACGATCTCGGCCGTCGACCGCGTCTCCTC 75693 29 100.0 32 ............................. CTGATGCGTGCGGACCCGATGCTCTGCCTGAT 75754 29 100.0 32 ............................. GCGTCGACATCACGGAAACTCCCGCGTCATGA 75815 29 100.0 32 ............................. CATGCGTCGGACGACGTGACGGCTGGGTTGCA 75876 29 75.9 0 T.............T..A......TTT.T | ========== ====== ====== ====== ============================= ================================ ================== 8 29 97.0 32 GTGTTCCCCGCACACGCGGGGATGAACCG # Left flank : GGTGACGGTTGGCACCGCCGTTTCCCAATGGCCCGACACCGCCAGGATGGCGTCGGGGCGCCCGGGCAGCGTCGCGGCGATTTCGCGCAGATAGGCCGCCATATGGTCCCAGGTATCGGGCCTGTCCATGAAGAAGCATGGGCCGCCGCCATGCGGCATGAACAGGACCGGCTGACGCGCGGATGCGACGCCGGCCGGTCGGGGGGCGGTTGCCGGTGAGTCCATGGGGTGCTCCTGGGCGTGCGGGGCACGGGTATCATGCCATGGTTGAGGCATCACGATAAGCCCGAGGCCTGGTCAAGGCGATTGATTGGCCTCATGCCGTTTGGAATGACCCCCGAAGGCATTGTCCGTTGCCTCGGCCATTTGGGAGGGATGTCAGAACTGGATATTCCGGCTACTCTGGGAGAATGGAAGATGGGGCGACGCAAGGGCCCTTATTCGTCGGTGGAATTTTTGACATGAAAATAGGCTTTTAATATCAATATGCTCTGGGAAGA # Right flank : TTCTTCGAACGCTACATTGTCTTATCGATAAGATTCCTCCTTCTTTACTATGTGAGGATCTGGAAACGACTATATGATCTCGGTGCCGTTTACTGCTTGGGCGGGAGCCTGGAACGGCCGCGTTTGACGAAGGGACCGCTTCGGTGCGCAAGAAGGGGGCAGGGTCGGGTGTGTATTCCAGGTGCGGACGGGCTTTCCCTATTCTGGGGCAAGGCGCGAACTGATGTATTTGGGGTGGGGGGTCTTTCGGGGCCTGCGATGCACCCACTTGTTGCCCATATGCTCGACGTTGCGGCGGTGGCGGTTCTTCTGCCCGGATGGTCGCAGTGCACACTCGACAGACGCCAGATCGGGTTTCTGGTCGCGCTGCATGATATCGGCAAGCTGATGCCGGGGTTTCAGGCCAAGGTGCCGGAACACTGGCCCAGGGCAGCGTTCGGGCCGTTGTCATCCACGTTGGCCGCTGCCTCTCACGACGCGGACGGGTTGGCGCTCCTGAA # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCACACGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 85415-85992 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABEQK010000001.1 Gluconacetobacter takamatsuzukensis strain LMG 27800 contig00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 85415 29 100.0 32 ............................. CCCGTGACCTCGCCATAGTTCGACAGCACCGT 85476 29 100.0 32 ............................. CGATCAGGCGCCCGGACAGGTCGGCCGGATGA 85537 29 100.0 32 ............................. GCGCCGGAGCTATCGGGAGGAGGATTGTAAAT 85598 29 100.0 32 ............................. TTCACACGCCTATCCTCGCCCGCCGGCACATG 85659 29 100.0 32 ............................. CGGGATAACCCGGTCCTCGGCCAGGAATACGC 85720 29 96.6 32 ......T...................... GCGCCCGTAAAGGCGCCTTCTCCCACCAGCAG 85781 29 96.6 32 ............................T ACCGGATGAACCCCTCAGCGACCCCGAGGGTC 85842 29 100.0 32 ............................. GCGGCCGTGACCACGGTCGATAACGGCATCGA 85903 29 96.6 32 ..............T.............. ACCTGCTGGCTTGCCATCATCATCGGCCTGCG 85964 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 10 29 98.6 32 GTGTTCCCCGCACACGCGGGGATGAACCG # Left flank : GGTTCTGGCGGCCGGCGGCATGGAAATGCCGGTGGCTCCGGACGAGGCCATGCCTGTCGCGTTTGACGACCCTAAAGGCCTGGGTGATGCTGGTCATCGTGGTTGAAAACGCGCCGCCCCGCTTGCGGGGGCGGCTTGCCGTCTGGTTGCTGGAAGTCCGTGCCGGAGTCTATATCGGCACGTATGGCCGCCGGGTGCGCGAGATGATCTGGGGACAGGTCTGTGCCTATATCGAGGACGGCAACGCCGTTATCGCCTGGGCGGCACCGAACGACGCCGGGTTTGCATTCGATACCTGCGGCCGTAACCGTCGGGTGCCCGTGGATTTCGACGGGCTTCGGCTGGTCGCGTTCGGGGCCGAAGCGGCGCTGCCGACCCAGCCTGGGCCGGCCGCTACCTCGCCGCCAGGGCGCCGGGGACCTCGCTGACACCAGGGCATTTCGATCGGTAGAATCTTTGACAAGGAAATAGGTGTTTTATATCAACGTTTTGTCGGAAGA # Right flank : ATGAACTGTTGACCGTTCTTTTCATGTCTCCCCCAGGAACAGGGGTTTTTCCTTTTCGACTTCGCGGCGGAGGAGGGCGCAGAGGTGGTGGATGCGTCTGGTGCCGCGTTCGTCAGCGCGGGTGACGAGCCAGTAGATGCGGCGCAGGGTCATCGTTTCGGGTAGCACACGGACCAGTTGGGGGCGGGTGGCGGCGACGAAGGCGGGGAGGACGGCGAGGCACAGGCCGGAACACGCGGCCTCCATCTGCGCGTGGATGCTGGAATTCTGGATCCGGACCGCGCGGGCGGGGATGCCCATGGCGCCCTGGTAGTCGAGCTCACGCGTGAACAGGAGTTCGTCGACATAGCCTGCGAACATGTGGTCGGTCAGGTCCTCGCGCATGTGGATCGGGGTGTGGCGGGCCAGGTAGTCGGGGCTGGCGTAGATGAACAGGGCGTATTCGCCCAGTTCCTCGCCCACGAAGCGGTTGCCGTTCGGCGGGGTCAGCGTGATCGCGA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCACACGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //