Array 1 97-797 **** Predicted by CRISPRDetect 2.4 *** >NZ_NARU01000190.1 Gilliamella apicola strain AW13 NODE_190, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 97 29 93.1 32 ..A..........G............... TCCTAACCGTTAGGGAAAATTTTGTAAACGCA 158 29 93.1 32 G............G............... TAATTGGTTTTTAAATGGCGAGCTTTGAATGT 219 29 93.1 32 G............G............... ATATTGTGTCGATATTAAAAGCAAAGCCAAGC 280 29 96.6 33 .............G............... CAAAAAGCGACGATATATACTTAAACCTTTAGC 342 29 93.1 32 .............GT.............. AGGATCCTCACCTAGCGCATATGTCCTCATAA 403 29 96.6 32 .............G............... AGTTCGATCAACCGACTAATGATATTACGCGC 464 29 96.6 32 .............G............... AAAATCACGAAGTTTTACCAGTATCAGAACAA 525 29 100.0 32 ............................. GAAAATTCAAAACTTGGATTAAACATTACATT 586 29 100.0 32 ............................. CATTGGCGGCGTTGATTTAGATACAAATAAAA 647 29 100.0 32 ............................. CGTCTATCCTCAATATTCTAGTGGTGGTTTTA 708 29 100.0 32 ............................. CCACCAGTCGTCCTCACGCTCATAGTCTGGTA 769 29 89.7 0 .............G......A.......A | ========== ====== ====== ====== ============================= ================================= ================== 12 29 96.0 32 ATGTTCCCTGTATACACAGGGATAAACCG # Left flank : GTGTTATAAATACAGATTTTGGTAAAAAATAGCCTAAAAAATCGGTAGAAATTTATCAGTCAATATTTTAATTATAAAACAGTATGTTATAATAGGA # Right flank : AAACGGTCAACATATTCAGACGTTTTAATCATATGCACAGGGATAAAATACAAATCCACTACCGCCTTTGTAGCGGTTTTTAATTGACCTAATGGTTAAATAGCATACCATTACCGAAATTTAATTATTAAGGGAATGGTATGAAAAAGATTAAAAAACTTTTATGAAGCTTTTTTGTTTTCAAGATAAAATTTAATTGCATCAATAATCAGTTGCGCTTGAGGTACCTTTAATTGATTGCTTGCTTCCTCAATTAATGCAATATCATCTACATGAAGCTTAAAACCTTTTGTTTTCACACCTCGTTTTTCGTCACTTTTTTTTTGAATTACAGCCCTTGTTAATGCCATATAATCACCATGATTTTTAAATAAAAATTGTTATATTTAAGGCCGCAGGTGAGGACTGCAACCTTCAACCTTTGAAGCAGTTTTAGTAAACTGTACAACTTCAGATTATTAAAACTACGAGAATTAAGATTCTGTTCTTCTTGTTTCTCC # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.54, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCTGTATACACAGGGATAAACCG # Alternate repeat : ATGTTCCCTGTATGCACAGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: F [matched GTGTTCCCTATACACATAGGGATAAACCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [3-3] Score: 0/0.41 # AT richness analysis in flanks prediction: F [80.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2398-1393 **** Predicted by CRISPRDetect 2.4 *** >NZ_NARU01000234.1 Gilliamella apicola strain AW13 NODE_234, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2397 29 100.0 32 ............................. CGAATAGGTAGGTGATATGACAGAACACGCAT 2336 29 100.0 32 ............................. CCTTGACTCACCTAGTAGACATGGTCTAAATG 2275 29 100.0 32 ............................. TAATGAGTTACGCTCATATGTGCTTTGGGCTA 2214 29 100.0 32 ............................. GGTTTAGTCGTCTTGAATCGTGGTGGGTCGCC 2153 29 100.0 32 ............................. CATTTATGAACCGTTTCCACTCCCTCTAAATA 2092 29 100.0 32 ............................. AAATGTTAACAATTGTCTCTTTTGTTTCTTAG 2031 29 100.0 32 ............................. GGTTCACATTGGATTTAGTCCGAGCAATAACC 1970 29 100.0 32 ............................. GGTTCACATTGGATTTAGTCCGAGCAATAACC 1909 29 100.0 32 ............................. GCTGATAAAAAAAGCCAAGGGGGATAACTAAT 1848 29 100.0 32 ............................. CGTTATGTTGAATTTGTAGGCTGTATACTGTT 1787 29 100.0 32 ............................. GGTTTTGGATACTGATAAACAGCAACAGCACT 1726 29 100.0 32 ............................. AAATTGAGCGAGTACTGCGCGACGTTGGACTC 1665 29 100.0 32 ............................. GGTACTGCAGATTGGTGGAAGAAACAATCAGA 1604 29 100.0 32 ............................. CTTAGAGCTATGGCTAACAGATTATTTTGAGG 1543 29 100.0 32 ............................. TATGTTCACTAAAGGATTTGAAGGTGAAATAT 1482 29 96.6 32 ............T................ TCCTGTAAAATATTCGTACACAGTTAATGGAG 1421 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.6 32 ATGTTCCCTGTACACACAGGGATAAACCG # Left flank : ATTTATAATCCAAAAATAGAAATACCTTTTTACCCGCCGATAAAATAACTTAGTGCAATGTCAACATAGTAATTTTTTGCTATTTAATAAATCCTAATTATACATTTTAATGTATTATTGTTTTTAATATCATGAAAAATAACAATTTATTGGTAGAATCCTATGAATATTAATTTTACCTACCGTTAATTTAAATTAACTCAATAAAAACATAGTGTTATAAATACTAATTTTATTACAAATTAACCCAAAAAATCGGTAGAAATTTGACAGTCAATATTTTAATTATAAAACAGTATGTTATAATTGG # Right flank : TTCTATAAAGCTGGTTAGTCAGACTAAGAACGAAGAATTGGCTAAAATAATTCACGAAATGGATTACATCCCGTGGACAAATGTGTCAACTCCAAGAGGTGTTTATGCTCATGAGATGGGGCACGTGTTACATTATCAATATAAAGAAGATATGGATGATATTATCAAAAAATCATAGGGCGAGCTTGGGCATATGCAATTAGTAATTATGCTCTACATAACAAACGAGAATTTGTTGCTGAAGCGTTTTCGTTGTATATTGAAAATCACATAGAAGCTAAAAAGAGACTTTCTCCAGAATTATTTAAACTTTTCGAATCACTAGATAAGGATATTAAATGAATAAGTTTGATTTATTAGTTGAGCAAGCAACTGAACTGATTAACACCGAGCCACTTCCTGATGATGCAGAGGAACAATTGCAAAAAATTATCGACCAAGCTGACGACAAAACGGAAAGACACATGTTAGGTAGGCTTGCTGAAGCTCTGTTTGTTATA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCTGTACACACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTGTTCCCTATACACATAGGGATAAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [68.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 33469-31975 **** Predicted by CRISPRDetect 2.4 *** >NZ_NARU01000012.1 Gilliamella apicola strain AW13 NODE_12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 33468 29 100.0 32 ............................. CCCTCGGTTGAGGGCTTTTTTGTTTCCTATTT 33407 29 100.0 32 ............................. TAACTCTATTTTCTAATATATCTAGTTTAACC 33346 29 100.0 32 ............................. AATTGTCTTTGATGCTATTTATAAAAAATAAA 33285 29 96.6 33 ............................T GTTGGTGCACTTAAATAACCACAGCATCGACGA 33223 29 100.0 32 ............................. TTTGCTTTCTTTATCATAGTTACGACCCTGAA 33162 29 100.0 32 ............................. CAATCGTATGCGATCACGCATGGGTAACGGAT 33101 29 100.0 32 ............................. AGGAAATAATCATTATTCGGATATGACATCCT 33040 29 100.0 32 ............................. AGTTTAAACAATCTTTAGAAACTCATGAATAT 32979 29 100.0 32 ............................. TAACTAATGCGATAATTTCATCGTCTGTTAAA 32918 29 100.0 32 ............................. GATAATAAAAAATTATCAGAGCATGATAGAGA 32857 29 100.0 32 ............................. GATTGACGTAACGAATAGGGTTAACAAATTGC 32796 29 100.0 32 ............................. AAAGCCCTTAATTTTTTAATAAATGAAAAAGG 32735 29 100.0 32 ............................. GCGGACAATGACCCGGCGAATATAAGAAATAC 32674 29 100.0 32 ............................. GAGAGTAAATGCAACAAACTTCATAGTAAATC 32613 29 96.6 32 ............................A GTTTGTCCACCAACCCAGCTAATAGGGCGTAC 32552 29 100.0 32 ............................. CGCACACGTGAAATATTAGAGGTCTTTGATTG 32491 29 100.0 32 ............................. TCAATTTAACTAACATTTGATTGCACCCTCTT 32430 29 100.0 32 ............................. TCTTTTCGCATTATCATTCGCAGATGAGTTAA 32369 29 96.6 32 .............A............... GGTGGGCCGGAGCGTTTACCAGGCTCTCCACC 32308 29 96.6 32 .............A............... AATTAGAAAAAGAAATTGATGAGTTCAAAAGA 32247 29 96.6 32 .............A............... CACGCTTTAATGCGCAAGAATCGCCAGACGGC 32186 29 96.6 32 .............A............... GGGGCGTATGGCTTGGGAGATAACACCACAGG 32125 29 93.1 32 .............A..............A CCGCAAAGTCGGATAAAATTGGAACAGCATAC 32064 29 93.1 32 ............CA............... AGCCTATCGCTATATCCCTATATGAAATGCAA 32003 29 96.6 0 .............A............... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.5 32 ATGTTCCCTGTATGCACAGGGATAAACCG # Left flank : ATAACATCTCAATAAAATCTACTATTTTTTTAACTAAATGAAAAATATAAAATTATCGGTAGAATTCCGTAGAATCTAATTTTAATTTCCATCAATTTTAATTACTTTAATAAAAACATAACGTTATAAATACTGATTTTGATAAAAAATAACCTAAAAAATCGGTAGAAATTTTGTAGTCAATATTTTAATTATAAAACAGTATGTTATAATTGG # Right flank : CTTATTTAGCAATATAATCAATGGGTCCATATTAGTTTTAGTCTGAATAACAACCGTTAAATCGTGTTAACAGCAATCAAACAGGGCGGTAAAACTGTTTACGTGAATGGGTTGATTTAAATAACTGTCCACAAAAAGGATAATACTATGTTTAAACGGCTTGGAATAATCAACAGAAAATCAGAGAGAGCTAGTGTTAATGTCTCATGGTAATGAGACAATTTTGTTAGTTGTAGAGACGTATTTATTTGAAGAGATAATTGCATCATGGGTCATAGCAACATTAATTACCATATCTATTTTTTGTTTATACGCAAAATATGTTAGTCCTGAAATTTGGAATTATATAGTCGCGTTTTTATTTGGATGATGTATGAATAAATCAAAAATATTAGGTGCCGCATTAATTGTCGTTATTTTTGTTCTAATTATTTATTTCGGTTACAACAATTATCAGGAAAAAATAGACTCAAAAACGATAAATTAGAATTAACCAATAA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCTGTATGCACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTGTTCCCCGTATGCACGGGGATAAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 17374-17646 **** Predicted by CRISPRDetect 2.4 *** >NZ_NARU01000034.1 Gilliamella apicola strain AW13 NODE_34, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 17374 29 100.0 32 ............................. CAAAAATTAATAACAAAAATGTAGCATTTTTT 17435 29 100.0 32 ............................. TCTGATTTATTCTGCATAAGTTCCCTAAATGT 17496 29 100.0 32 ............................. GAAATTAAATTATCGTTCAACGGTACAGACGT 17557 29 96.6 32 ..............C.............. GCAGATGATAAACGTTTAAAACGATTTGAACG 17618 29 82.8 0 A.............C........T..T.A | ========== ====== ====== ====== ============================= ================================ ================== 5 29 95.9 32 GTGTTCCCTGTATATACAGGGATAAACCG # Left flank : GCCCAAAGTACTGTGGATAATTCATCATCAGTCACTTGCCCAGCAGGGAATCCACCACCTGGCGTTGATACGCGTTTTTTAAGACTTTCAAACAGACTCATGCCATCTTTCATTTGCGGTGTCGGTAAATTAATATCGGCATAACAGAATGGTAAACAAAACAATGATAAAAATAGAATGGAAACGGTCTTCCGTAAACCCCAAGGCATAACATACTCCTGAACTTTCGGTAATAGCGTGGTGATATCTTATTGCTAATGATCACAATTATCAATATCAAATAATAATAATTATCATTTTTAAGCTAAATTAAAATTATTAAAATAATCAATATAGTTATTGTTAGCGACCGATTCGCTAATATCAGCTTTATAACATTAATTATGCTGTTAATAAAAATATCGGTTAAATCAAAATGATTTGATTAAAAAACAACCTAAAAAGTTGGTAAAAATTTTAATGCCACTATTTTAATTATAAAACAAACAGTTATAATTAGA # Right flank : AATAGTAGTCATAAATTTTTCCTACAGTGCTACAATTGGTTGGTATTTATAAACAAAATTTAGCCACGGTTATCGACCTGTGGAATGATTTGCGAGAAAAAACAAAATCACCTGATAAAAAGCAACTATACTCTATTACCATTACAAAATTGCAAGGCACGCAAAGGTGGGCAGTCAAGGTCTTAACGATTCAGATACCTGCTCATAACCAAATATCTATTTACACTCATTAACACAAAAAATCAGATTAATAGAGCTATGTTGTATAAACTATATACATATTCACAATAGATATAAAGACAATGTGAGGATGTAGTATGACCAAGCAAGTAGCTGTTTTAGGAGATATGACCAATTATGGTGGTAGGATTATCACAGCGTCAGGGAATGGCTATTGTGGTATGGATGGTGTTGCTCTATTAGGTGACTTGGTATCCTGCCCTAAATGTAGCAGTACTGGCAGAATCATTGAGGGAGCAAACAATTTTATTATCGATGGT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATATACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: F [matched GAGTTCCCTGTAGGTACAGGGATATACCG with 89% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8940-8361 **** Predicted by CRISPRDetect 2.4 *** >NZ_NARU01000102.1 Gilliamella apicola strain AW13 NODE_102, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 8939 29 100.0 32 ............................. TCTAGACTATATCTTATATAAAGGATACCCCT 8878 29 100.0 33 ............................. CTTGCGCTATGTTGCGGGTCGCCGTCGTCGCCC 8816 29 100.0 32 ............................. GCGATTGATACCGTTTCTGATAACATGATTCA 8755 29 100.0 32 ............................. CAATTCAAATAATTATAGCAGATACGCCCGCC 8694 29 100.0 32 ............................. GGTGGCGGTTGTACTGTATTTGAAAGGCGCAA 8633 29 100.0 32 ............................. GCGGACGATTATAGCGGCGTAGACATGCCGTT 8572 29 100.0 32 ............................. TCCATGCAGAACAACCTATTGAAATTAAAAAA 8511 29 100.0 32 ............................. GCGTTTTCTCGTTTCTCCACGGACCAGGCGAA 8450 29 100.0 32 ............................. TTTCCGAAATGGCATGGCGTAAACTTACACCT 8389 29 79.3 0 ............C..........TTTT.T | ========== ====== ====== ====== ============================= ================================= ================== 10 29 97.9 32 ATGTTCCCTGTATACACAGGGATAAACCG # Left flank : AAATGGTACTAACTAAAAATCGGTGTTTAAGTCTAATTTATGTTAATTTTGTAACCGAACCACATAAGCAACCAATTCTAAAAATAGAGTGATTTTGATAACAACAAAGCATTAAAAACACCTCAAAAAAATCATATTAAAAACATTGAAAAGTTGGCGGAAATTTCAGCAAATGATTTTAGTTAATAAACAATAAGTTATAATAAGGACGTTCCCTGTATACATATAGATAAACCGTCGATGTATTAATATTGCATATCATTTTTTTGCTATTCAAAAATCGCAATTATGTATTTCATTGTTTACTTTTTTTTAATTACATGAAAAATATAAACTTATCGGTAGAATCCCGTAGAATCTAATTTTAACTTCTATTAATTTTAATTAATCAAATAAAAACATAGTGTTATATATTATGATTTTAATGAAAAATATCCCAAAAAATCGGTAGAAATTTGACAGTCAAGATTTTAATTATAAAACAGTATGTTATAATTGGT # Right flank : TTTATGTAAGATTTTGCTAATTTTTGTCAAAAAGTTTCAGATTATGCCTATGTTTCAGTATAAAAACATCGATAATTAATTTAGTTTAATGGTTAATTTTTATACAAGCCAACGTATTATAAAAATGCATATCATTTAATGTGTTAAGGCATTACTATTGTAAAGACAATGGTGAAAGTAACGATCTGTTAGTTCTTGATGTTCATTAGTTATCTTCGTACAATAAAAAAAATTTTTATTTTGGTTTGTTATGCAATTACATTTAGTGGTTAATACGTTTGGTTCTGATTTGCAGCGTCGTTATGGAGAAAAGATCTATAAACTGACGTTACATGGTGGATTTAGTTGTCCAAATCGTGATGGTACTCTTGGTGTTGGTGGTTGCACTTTTTGTAATGTTGCGTCAATTATCGATGAATCTATCCAAGTCAAATCTATTTCTGAACAGCTTGCAACCCAAGCACATCAAATGAAAAAATCAAAGCGTTATCTTGCCTACT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCTGTATACACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: R [matched GTGTTCCCTATACACATAGGGATAAACCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 28823-29581 **** Predicted by CRISPRDetect 2.4 *** >NZ_NARU01000014.1 Gilliamella apicola strain AW13 NODE_14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ==================================== ================== 28823 26 100.0 35 .......................... CCATCAAAGATTGGTAATTTATACCGTGTTTCCTC 28884 26 100.0 35 .......................... CCGTGATTTTTAGATGATTTAAAGAGAGCCGACAA 28945 26 100.0 35 .......................... CCGAGATCTAAATATTTTATCAAATCGGTATCAGG 29006 26 100.0 35 .......................... CCGCGAAATAATTTACCTATTGCAGTCAGGGAAAT 29067 26 100.0 35 .......................... CCGAGAAGCTAAACGAAATTTTGGACAATCATGCT 29128 26 100.0 35 .......................... CCGAGGTCCAGGCACAGACCAATTATTTAGGTCGC 29189 26 100.0 35 .......................... CCGTCTGTTCTAGACTGTCTTTCTTTTTGATAATT 29250 26 100.0 35 .......................... CCGCGTACAGCAAATATTAGATGCCTTACCCAACG 29311 26 100.0 35 .......................... CCGGACAAACTGGGCGTTATCCGCTAAATTACCCA 29372 26 100.0 35 .......................... CCGATAAAACATTATTCCAGAGTGCATTTATCCTG 29433 26 100.0 36 .......................... CCGCACTAAATTTATTAACTCAAATACACCAACATT 29495 26 100.0 35 .......................... CCGGGATTTACCAAACGAGGGTACTCGTCGTGTTA 29556 26 100.0 0 .......................... | ========== ====== ====== ====== ========================== ==================================== ================== 13 26 100.0 35 GTGTTCCCTGTATACACAGGGATAAA # Left flank : GCTTATTGAAGAAGTTTTGTCCGCTGGTGGTATCGAACCGCCTCTACCACATGATGATGCCCAACCACCAGCTATCCCAGAACCTCAATCTTTAGCCGATAGTGGCTTTAGGAGTCGCTAATATGAGTATGTGTGTTGTGGTAACTGAAAATGTTCCACCTCGATTACGTGGTCGTTTAGCAATTTGGTTACTTGAAATTAGAGCCGGAGTTTATATCGGTGACATATCAAAACCAATAAGAGAAATGATATGGCAACAAATTGTTAAACTTGCAGAAGAAGGCAATGTAGTCCTTGCTTGGGCGACTAATACAGAATCAGGATTTGACTTCCAAACTTATGGCGCTAATAGAAGGGTTCCGGTAGATTTAGATGGACTAAGATTAGTCTCTTTTTTACCTATTGAAAATCAATAGGTTAACGTTCTTTAAAAAATTAAAAAAATTGGTAGATTTTTGGGTCGCCAATAAATCTAAATAAAACAATTATATATATTTAGA # Right flank : TCAGCTTTTACTCGTTTTTTATCTAACTAAAATCCTTTGTTGGATAAGTTATTGCTAATTTGTTCTAAGTCAGAATGTTCAGTTTTTTCTGAAACATTAAATAATTGAGCAAAATATTATACAGTTTTGTATCCATTTTGTTTTATTAGCGGTTTATCTAAAAAAGCTTGTCTTTCTGTTAGTATTGGATACCTTCTTGTTCAATAACAACACAATGATTTGATTATAATTAGTTAAAATAGTTTTTATATCACAAAGATCTTCAATAACTTGTTGCAATGATGGTATTGGAAAACACAATAAGGTATAAAATTAGATTTAATTTTTGTCTAATATTTTTATACTTATTGATAATTTATTATAGGTAATAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATACACAGGGATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTGTTCCCCGTATACACGGGGATAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 7224-6401 **** Predicted by CRISPRDetect 2.4 *** >NZ_NARU01000142.1 Gilliamella apicola strain AW13 NODE_142, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 7223 29 100.0 32 ............................. CGATGGTTCCACTCCGGTTTTGTTATCATGTA 7162 29 100.0 32 ............................. CGCACAACATATAATGATATTATTAAATTAAT 7101 29 100.0 32 ............................. GCAACTAAACATAACATTGACCCAAAATTGTT 7040 29 100.0 32 ............................. GAGATGACTAATGCAACTGACAGAACATTTTA 6979 29 100.0 32 ............................. ATTGAATATCTATCCAACGATAGTTTTATCAT 6918 29 100.0 32 ............................. CATATGTTGACTGTGTGGTTTACCGCCTACCG 6857 29 100.0 32 ............................. CAAAATTTAATTGGCACACTCAAAAAAATATT 6796 29 100.0 32 ............................. ATATTCAAATAAAAAAACATGCGTTTGACATG 6735 29 100.0 32 ............................. TCTTTGTATGTTATTAATTTACCCGTTGCTGT 6674 29 100.0 33 ............................. ATATTGTTACCACAATGAAATGCGCTGACGGGC 6612 29 100.0 32 ............................. TCATTGATTTTATTATTTCTATATGTAAATAC 6551 29 100.0 32 ............................. AACATAAATTCACAGGAATAGTAGTGAAAGAA 6490 29 100.0 32 ............................. TAAACCAAATTCGTGGGAATGTTCTATCAACA 6429 29 86.2 0 ............C..........T..T.A | ========== ====== ====== ====== ============================= ================================= ================== 14 29 99.0 32 ATGTTCCCTGTATACACAGGGATAAACCG # Left flank : GATAAGTTAAATTATTAGGTCCTCTAAAAGATGAAATGTAAAGCTATTGGTTGTTGCACTCACGCATACTCATCAACTGGTTATTGCCATCGACATTTGTATTTAGTTAAAGCGAATCGAATTGTAAGTAAAGCTGGGTCAATAATGTTCCCTGTGCACATAGGCATAAACCGCGTTACAAATGAACCCGTAAAACTAACCGAATGTTTTCCCTGTATATACAGGAATAAACCAGCGATGCGTCAATTTACATGGCATTTTTTTGCTATTCAAAAATCATAATTCTAAATTTCATTGTTTACCATCTTTTTAATTATATGAAAAATATAAACTTATCGGTGGAATTCCGTAGACTCTAATTTTAATTTTCATCAATTTTAATTAATTGAATAAAAACATAGTGTTATAGATGATGATTTTAATAAAAAAGAGCCTAAAAAATCGGTAGAAATTTGGAAGTCAATATTTTAATTATAAAACAGTATGTTATAATTGG # Right flank : CAAATCCATCATAAACAGCCCTAGTGGCGGTTTTTCATTGCCCTTAATCTTTAAATAACATACCATTACCTAAAAAAGGAGATGGTATGAAAAGAATTGTATTACTAGGATTGGTTTGTTTTGCGTTGTCTGGTTGTGGTGATGATAGTGGCAGTAAAGTTACTAATGAGTTTTTGGTTGGTAAGTGGGAGTGTAAATTGGAAGATTACAGATCGAAAATGAAAAATGGAAAATTTACTGATTATGTTAGTGATGGGTTTAATATAATAAGGAAGGAAGAATTCAAAATAGAAAATAATAAACTGTATACTATAAGTAAAACTGAAGTGGATGGACATACTTTTTGGGAATCGAATGATTGGGAAGAAAGTGATAGAACTATTACTCATACGGGACAAATAGTAGAGAAAAAGGAAGATAATTTAACCGAAAAATCAACCAATTCCCTAATTAAAAAATCACATGATACTTATTTAATGATTGAGGAATATATTAAAACT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCTGTATACACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: R [matched GTGTTCCCTATACACATAGGGATAAACCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3195-4321 **** Predicted by CRISPRDetect 2.4 *** >NZ_NARU01000161.1 Gilliamella apicola strain AW13 NODE_161, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3195 29 100.0 32 ............................. ATATCCGTGCACATACACCAACCTAGATTAAA 3256 29 100.0 32 ............................. CTGGGATCCTTACCTTGTGCCAGTAGCTTCTT 3317 29 96.6 32 ............................C ACAACCTGTTACGTATAATGTTGATTTAGTGC 3378 29 100.0 32 ............................. ACGTAATCGAACTGTACCAATCACAAAAGATC 3439 29 100.0 32 ............................. TTTCTGTATGATCAGTATCACGATTGAGATTG 3500 29 100.0 32 ............................. CTGTCGAACGCTACACATTGCAAAAATTAAAT 3561 29 100.0 32 ............................. GATGTTAGTATTACCAGTCATTATTGATCAAT 3622 29 100.0 32 ............................. GCAACATCGAGCACGAGGGCGAGACACAGCAA 3683 29 100.0 32 ............................. AATGCCCTGAATGCAAATTTATGAAGCCGATC 3744 29 100.0 32 ............................. TTCAATTTCTTTTTGATTATTATCATAGAAAT 3805 29 100.0 32 ............................. CTGGACATCGGCATGATTGAAATTATTCTACC 3866 29 100.0 32 ............................. GGCGTTAGAAAGCTATTACGTCTGGAAATGCC 3927 29 100.0 32 ............................. CGTGGGATGATAAAAACGGTTGTTGGCGAGAT 3988 29 100.0 32 ............................. GATTAAAACACGCTCGGAACATTTGAAAGATG 4049 29 100.0 32 ............................. TTTCTGTATGATCAGTATCACGATTGAGATTG 4110 29 100.0 32 ............................. CTGTCGAACGCTACACATTGCAAAAATTAAAT 4171 29 100.0 32 ............................. GATGTTAGTATTACCAGTCATTATTGATCAAT 4232 29 100.0 32 ............................. CGGTCCAACATTAGAGACCGTGTTGGTTTTGT 4293 29 89.7 0 .......T..................TT. | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.3 32 ATGTTCCCTGTATGCACAGGGATAAACCG # Left flank : GTATAAAAATCAATAAATAATTCAAATTAACTTTATGTTTATAAAGAAAACATAATATTTGGTCAATATAAGCATTTACTTTTAAAATTAAGTAATAGATTTGCAATAAAAGCCTTACATAATGGTTTTTACTTAAAAAAATATAGTTGATTACTTTAAGATTGCCGAAATGATATTAACTAAAAACGAGTATATAAATCATAGATTATGAAAAATTTTGTAACTAAGTTACACAAACAAATCACTCTAAAAATAGAGTAATTTTGATAACAATGAAGCACTAATAACATCTCAATAAAACTTACTATTTTTTTAACCAAATGAAAAATATAAACTTATTGGTAGAATCCCGTAGAATCTAATTTTAATTTCCATTAATTTTAATTAATCAAATAAAAACATATTGTTATAGATTGTGATTTTAATGAAAAATATTCTAAAAAATCGGTAGAAATTTGACAGCCAATATTTTAATTATAAAACAGTATGTTATAATTGGT # Right flank : GGATTGGGTGCATCGATTCTCTCGATGTTATTGTATATTCCCTGTATATATATGAAAAATTAGAAGGTATTGTTATAAAAAATAAACGAGCAAAGTTGTTTTTAAAGACAATATCTGATTTATTAAGATTAGCTGTAAATGTTTTTCTGAAACACAATAAAACTTAATCTAATATTAACCAACGATTGTAAGGAATTGATATGAAAAAGATACTAATGTTAATTACCGCTCTATTTTTATTCGGATGTGACAGGACCTATACTGTGGAAGAGTTCAAAAATGATGAAAAACTAACAGATGAATACCAAAAAAAATGTCAAAACGGTGAAATTGATGGTGATAGTTTAAATTGTCAAAACTCTCGCAAAGCAGTAGTTGTACGAAATAAAGTTAGTAATGCAAGTTGGAATTAAAGTCATTTTAAAAGTGGCTTTTAAAACTTTATCTGTGGTAAGTTTTTAGACTTAAATTGATTGTTATTTATTTGAAACTTATCACTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCTGTATGCACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTGTTCCCCGTATGCACGGGGATAAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //