Array 1 879396-879582 **** Predicted by CRISPRDetect 2.4 *** >NC_017304.1 Acetivibrio thermocellus DSM 1313, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 879396 37 100.0 38 ..................................... CCAAAATCAGGCCGTGCATGGGTGAACCAGGAAGCAAA 879471 37 97.3 38 ...............T..................... ATACATAACAGAATTCGCCTCCCAATTTATCATTATAG 879546 37 97.3 0 ................................A.... | ========== ====== ====== ====== ===================================== ====================================== ================== 3 37 98.2 38 GTTGAAGAGGTACTTCCAGTAAAACAAGGATTGAAAC # Left flank : CGGTAAAGAGATTGACAGTATAAATAGATTGAGAAACAAAGTTGAGGCAAGAAATAATAGTATTTTTGCTCATGGTTATGAATTTATTAGTAAAGAAAAGTATAATGAATTTAAAAAAGTGGTTGAAGATTATATGAACTTGTTGTGTTCTATAGAAGGAATAGATAAAGAAGAACTGTTTGATTCATGCGAGTTTATAAAGCTATAGCCGAGAGTTAATATGATTAAAGAATAAGGTGTTGAAATTAAAACCAGATTATGTTATGTTTTAATTAAAGTGATAAGTAACATTTTACAAAATGTGGATACAAAATTATTGAGAATTTTGAGTTCATGTTCGTTAAAGCCTTGGAAATAGTGGTATGGAAGCTTATGTTGATAGCAAAAAATTGAATGAAAAATGGTGGATTTTAGGAGAATTTTGATAAAATATGACCAAAAAAGTTCAGTCAAAAAAATCTTGTAAGCATTGACATTTAAGCAATATCACCTCGAGGACT # Right flank : CATATGAGACTCTATTTCAAGCCTTACAGAATCAGAACTTCCACCAATCCATTTTCTGTGCCGTTAAAACAAACCTTGTAAGGAGGTGCCAAATGAAGCTGATTCTGAATACACCCGGACTTTACCTTTGTAAAAGGGAGAGTGCTTTCAGATTCAAAGCGAGAATGAAAAACGGGAAATAGCTGCAACTAAAGTTGACCAAATAATGATAACCATTCATGCAGCTCTTACAACTGATGCAATTGAACTGGCCCTTGAATACAATATTGACATAATATTTTTAAAAAACACGGGACAACCAATGGGGCGTGTATGGCATTCAAAACTTGGAAGTATCAGTACAATTAGAAGAAAACAATTATTCCTCCAGGATAGCCCGCTTGGGCTTCAACTTGTAAAAGAATGGATCTTGGAGAAAATGGATAATCAAATACGGCTGTTAAAGAAACTGGAAGTTAACCGCAGAGATGATGAAAAACGTGCTATAATCAGGGATACCA # Questionable array : NO Score: 8.58 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAGAGGTACTTCCAGTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: F [matched GTTGAAGTGGTACTTCCAGTAAAACAAGGATTGAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 982277-976887 **** Predicted by CRISPRDetect 2.4 *** >NC_017304.1 Acetivibrio thermocellus DSM 1313, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================== ================== 982276 30 100.0 37 .............................. TCTTCATCATCGGATATCTTTCTTTCCATTTTTGGAC 982209 30 100.0 37 .............................. TTTGTTATAGAGAGTCATTTAATCAATATTGAATTAG 982142 30 100.0 36 .............................. TGACAGCCCAAACGAAAAACCCAATTGCTACATTCA 982076 30 100.0 36 .............................. TTTTGAAGATAATTTTGGAGAACGGGCTGCAAGAGA 982010 30 100.0 36 .............................. TTTCATTTAGAACTTGATTCGTCATATCATCTCTGA 981944 30 100.0 37 .............................. CCAAGAAAAGCGGCGACAAGATTACTTCGATTAAACC 981877 30 100.0 38 .............................. ATTTTTTCAAGGATGTATTCGATGTCTTCATCTCTTCC 981809 30 100.0 37 .............................. TAGCTTCGCATGAAGTTTGATTGTATCACGCTATTGA 981742 30 100.0 37 .............................. ATATATCTACTTTCTGAAAACCTCCTCACAAAACAAC 981675 30 100.0 37 .............................. TAAGAACTAGTCTATCAGAAATATCACCATTTAAAGA 981608 30 100.0 36 .............................. CAGATGGGATGAATAAGGTCTTTAAATCCTCTTTTA 981542 30 100.0 36 .............................. CAATATATATCAGCATTTTCCAAAATCCAATCCATT 981476 30 100.0 38 .............................. TCTTGATGACTATTTTGGATGGTTTGATCCCGTTGCTT 981408 30 100.0 36 .............................. CACTTTTTGAAAGTATAAATGAGGAGGTATTGAAAG 981342 30 100.0 38 .............................. ATCAGTCTAATACTGGACGTAAATATATAGGTGCTATC 981274 30 100.0 37 .............................. GTATCAACAGTAAATTCCCCATCATACACCTTATTGG 981207 30 100.0 38 .............................. GGGTCATCCCCTGGAAGGGAGAATTCCGCACTTCCAAG 981139 30 100.0 36 .............................. AAATTACTATTGACAGTATAAAAATATATGATACAA 981073 30 100.0 36 .............................. ACTATTACAAAGGCAAAATTGCTTAGAAATGAGGAG 981007 30 100.0 36 .............................. GCATTTGAACATATCATGACCTTCCCCGAGGCAGAA 980941 30 100.0 40 .............................. TCCCTGATTTCAATTCTGCCGATAAGTTCAAATCCAGCCC 980871 30 100.0 38 .............................. ACTCTTCTTCCATCCGAATAGGTAATACAGTCAATTCG 980803 30 100.0 38 .............................. TTTGTCAGTCTGATTTTGATGTTCAAACTGTATTCCCC 980735 30 100.0 36 .............................. CACACGCTTTCCAATCCTTGATTGGTTTTCTTGCCT 980669 30 100.0 38 .............................. CGCTGATATGTGCTGCGACGGCTCATATGTATATGCAG 980601 30 100.0 37 .............................. TTTTGACTGGTCCAGGTTCCACCCATATTATCACTCC 980534 30 100.0 36 .............................. TACCTGATTTTGCAGTATGCGGTAGTCACTATTTCG 980468 30 100.0 36 .............................. TAGTGTCAATGTTCTTCCAAACTTCTTCAGGGAGGT 980402 30 100.0 36 .............................. AGTATTTCCTGCAAGGCTTCTTCTGCATCTACTATA 980336 30 100.0 36 .............................. TAAGCATCATGATGGATAAGGTCGGTACCTTCCCGA 980270 30 100.0 38 .............................. AAGCAGTTTGCCAAATCCTATCACTAAGTTGAGTCACA 980202 30 100.0 36 .............................. TGCTAATTAGCTCGTTGCCGCATAGCGCAATTATCA 980136 30 100.0 38 .............................. TATGTTCACATGGGATACATCGGTATATCCGTGGGTTC 980068 30 100.0 37 .............................. TAGATGAATCAAATAGTTCTACTGAACTTGGAGATAC 980001 30 100.0 36 .............................. TTTCTTTTTCTTGCCATATCCTGGCAATTTCTATAC 979935 30 100.0 41 .............................. ACAAATAATTTTACTATGCGCCAAGTAATTGGATATATCGC 979864 30 100.0 36 .............................. ACCTCCCGGACAAAAACTTATCCGGCGACGGGCCGA 979798 30 100.0 38 .............................. TGGTGTCAGAACATCCCGGGAATTCGGTTTGAAGATTC 979730 30 100.0 37 .............................. TGGCGCCTTGGGCGCCTGTAACCATAATTTCGCAGGA 979663 30 100.0 36 .............................. TCCACCACTGTCCAGAGTAAAAAAAAGTAGAACAGA 979597 30 100.0 36 .............................. CGGCAATCTTCTGTCGCAGTTGGCTGTTACGCGGAA 979531 30 100.0 38 .............................. ATCCGACAGTGAAAACATTCACTTTTGATTTATATGAA 979463 30 100.0 36 .............................. TTGTTCAGCCTCCTTTCTAAGCAATGTAATAATAAA 979397 30 100.0 38 .............................. ATCCGACAGTGAAAACATTCACTTTTGATTTATATGAA 979329 30 100.0 38 .............................. GCATTGGACTGATTCTGCATATCGCTATCAACTCCTTT 979261 30 100.0 37 .............................. AATTGTGGGATAGCACCGGCCTGATCAACCGGTGCGA 979194 30 100.0 37 .............................. GCCTGCCACTGCTCCCATCTGAAACCTTCCTCCTCTT 979127 30 100.0 37 .............................. GCTTTTAGCTTACTTTCTAATACGTAGCCATAATTCC 979060 30 100.0 36 .............................. TTCCGCCGTTGCCTCGCTTCCGTCCGGAGCTGGCGG 978994 30 100.0 36 .............................. CCGCCCCCGGAATGGGCTTGGGTGTGTCATAAGTAA 978928 30 100.0 38 .............................. ATTCCAGCGATTCGGCCATCGATATGAGCGCCAGGTTG 978860 30 100.0 37 .............................. GGCTTTCCTGCCAAAGTTGTTCCTGCTTCTGCGAAGC 978793 30 100.0 37 .............................. CCACCTGCAGAGTTAGAACCATTTATACGCAGAAAGG 978726 30 100.0 37 .............................. TATTCTGACACATCAATTTGCTTGAGTTCAGTGATTT 978659 30 100.0 37 .............................. TCAACGAGAACGATGTCATCAACAATGTGCGGGCCAG 978592 30 100.0 36 .............................. GCAGTTTCTGATACGTTTCATTGCTGGTCCGAACCG 978526 30 100.0 37 .............................. TTTCAAACCTTACAACTTGTTGCATAACAAATTCTCC 978459 30 100.0 38 .............................. TCTATCGATGCGAGTTCTTCATGCCGTAGTTCCAATGA 978391 30 100.0 36 .............................. AAACAAATTGCAATTATAAAAAAATAGGGAATCACA 978325 30 100.0 35 .............................. TGCGATCAAGTACACTGTTAAGACTATCAGGCTTC 978260 30 100.0 36 .............................. AAATAAATTTGTCGCTGCCTGAGCCAATTTCAACAC 978194 30 100.0 38 .............................. AAGATTTCATTTTTGCAATACCTTATGAAACATTTGGT 978126 30 100.0 36 .............................. ATCTAACAGTCCAGCTGCCTTGAGGTCGCTTATTTT 978060 30 100.0 38 .............................. GGGACGTCAACACTCCGAAAGGCGGCTAGAAGTGGACG 977992 30 100.0 36 .............................. GCCATATATACACCCCCTACAAGTAGCTTGGAGCAA 977926 30 100.0 35 .............................. AGCTTGTCCGCAGGCTTTTCTTCCTTGGGCTCTTC 977861 30 100.0 36 .............................. CATTTCCATCAACCTTAATAAGCACGTCTTCAGGTA 977795 30 100.0 35 .............................. TTGTCAACTAAGCATGCGAACTGCTCCGAGCCATT 977730 30 100.0 37 .............................. CCCAAAACATATTCATCCAAGTTATTCGTGCAGTTTA 977663 30 100.0 36 .............................. GCTGTAGTTACTTCTGTCCCGTTTTCTCTAATACTA 977597 30 100.0 38 .............................. CCGTTTTCATCCTTGAACCTATCAGATACTACAAACTC 977529 30 100.0 37 .............................. AATCCAATAGTAGTGCTAATAGTTCCCCATCCTCCGT 977462 30 100.0 39 .............................. ACATACAAAGGTATATCCCATCTTTTTCACTGTTTCAAA 977393 30 100.0 36 .............................. CAGACGACAGCTTTTTACCTATCCTTTATGAGCTGG 977327 30 100.0 43 .............................. TCGTACTGTAGACGGTGAAATACAAATCATTCCTGAGTTTTTA 977254 30 100.0 36 .............................. CGCAGTAGTCTGCTGTCAGTTCTATCCCTGCTGCGG 977188 30 100.0 37 .............................. ATTTATAAAGGAGAGATTATGTGGCAAAGATAACAGA 977121 30 100.0 41 .............................. TGACAAAGTAAAAGCAATAGCTGATGAGCGTAACTTAACTA 977050 30 100.0 37 .............................. GTGAGTACTTGTGAACAATCACGAGTTTCTCAGGTGT 976983 30 100.0 37 .............................. GTGAATTCCGATGCTGTTTCCCTTTCGGGTAAGTTTT 976916 30 93.3 0 ...........G.............A.... | ========== ====== ====== ====== ============================== =========================================== ================== 81 30 99.9 37 GTTTTTATCGTACCTATGAGGAATTGAAAC # Left flank : CCCCTTTGCAAAAGTTGGAGCCGCTTGTGTGTAAGTTTTGGGCATTGAAAGAAATGTGACAGACAGGATGAGGATAAAGATAACAGTAAGTTTTGTAATTTTCGATAACATAGAGCCCCCCTATATTTACATCTTTTGATTTTTGGATTATCATATGTACAAATTTATTGTATCATAAATTGGAGGTTCTATAAATTGTATGTAATATAAACAAAAGAAATAATTATTTGATTGTGTGACTGTATTTAGATGCTGTTGGCTCATAAGTTCCTATTGATATCAAGTATTCAAACTTTCTGCCTGGAGATTTTGCTGTTGTACATGGTTTTTATGTTCGTCGATGTGGAGTAGTGCAAAAAAGCCGGGGGATCGACAAAATTTATTAATGTGCCTCAAATGCTGATTTATAGGTCTCTTGAGAGAGTTTTTTTGTTCTGATTGTTGATTTTTGTTTTATATAGAGTTAAAATATAAAGCAGAAGTTTAGCGAGTTCTATGGG # Right flank : ACAATAGATACCGTCCCCGTGCTAATTTCATCATAGTTTTGTTGTGCCTATAATATAAATTGAAATTAATGCAAATATTGACATATCCTATAACTATTTATTTTTTCATGCCTATAAACTAAATCAATAACATTATAGGTACTCCGAAAAAAAATCTATTGACTTTTTGATATCCCAATGTTATCCTCACATTAGCCCAAAAAATCTTTGAAAGAAGGTGCTCCAACATTTACGCTCTTTTTATAGTGTTAAACGAAGTTGATTATCTTGATGATATTCTGGCCAAATTTGTTGACGTGGGAGTAAGCGGTGCAACAATTTTGCACAGCCAGGGAATGGCAAGCGCCATCGTCAACAGTGAAAATAACAAAATCTCACTCTTTAGCGCTTTAAAAAGCATTATAGAAAATATTCGTCCATATAACAAAACCATCTTTACAGTTTTGGAAAGCGAAGAATTGGTGGAAAAAGCCGTATCCGCCGTTCAAAGTGTGATAGGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.41 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 3 1916669-1914761 **** Predicted by CRISPRDetect 2.4 *** >NC_017304.1 Acetivibrio thermocellus DSM 1313, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================================================================================== ================== 1916668 30 100.0 38 .............................. GATAAAAAATGTTGGTGGTCTTTGATGGCCACCAAGTG 1916600 30 100.0 36 .............................. TAAATTACTGCAATATCTCTGATATACCTGAAGCTC 1916534 30 100.0 39 .............................. TTGAAAACATTGTACAGGCAATCGCGCGTGACTGTCTAG 1916465 30 100.0 36 .............................. TTGCCGGCACTGTCGGTAAGATCCCATTCTGCCGGA 1916399 30 96.7 36 .............................A TTCTTCCCCCTTCCTGCTCAGCACTTCAATAGCTTC 1916333 30 96.7 37 .............................A GCCTGCCACTGCTCCCATCTGAAACCTTCCTCCTCTT 1916266 30 96.7 37 .............................A TCCTATTCATAGGTACTGGGAAACCCAGCATGTTTGT 1916199 30 96.7 37 .............................A TTGGTGTTTCCGAGGTCTGCAATTGCGCCAGCAACAG 1916132 30 100.0 40 .............................. TTAAACAAGCTGCCATTGAAGCGGTTGCTGCTTCCAATCC 1916062 30 100.0 36 .............................. AACTTGAAAACATTGGCATTGGAATCAGTGAAATAA 1915996 30 100.0 40 .............................. TATTTTCAGCTTCTTGCTCTGTGTTATACTTACCAAGCCA 1915926 30 96.7 36 ....................A......... GGTTCTAATACATGCATAATCGAAATGTTCGAAGGG 1915860 30 100.0 36 .............................. ACTGCAAGATATGGCTTTCCGTCAACTTCATAATGA 1915794 30 100.0 38 .............................. AAAGCAAAAGCGATTGCAGCTCTTGAAAAAGCAAAAGG 1915726 30 100.0 37 .............................. CGATTGACAGCAGAGAAATAGCAGACATGTTGGAAAT 1915659 30 100.0 37 .............................. TGCGCAAACCGTTTTCCACACAAAAAACCGTTCCGTG 1915592 30 100.0 39 .............................. TCTTTGTTAATCTCTACTCTTCTCAAATCACCGTTCCAG 1915523 30 100.0 37 .............................. CTATTTTTTCATTGGATTGATTCCACAGCCATTCTTC 1915456 30 100.0 35 .............................. TTTGTGTTTTACTCTGGCTTGGTATTCACGGAGTA 1915391 30 100.0 37 .............................. GGGTCGAAGGGCTCATAGTTGCCTTGGAAACCTATGC 1915324 30 100.0 37 .............................. ACAGCAGGATTAAAGAAACATTTATTTTCGTGTTCTC 1915257 30 100.0 37 .............................. TTTCATTCCATCAACATATAAAGATGAAAGCGGTAAA 1915190 30 100.0 36 .............................. TAGAGTATTCCAAACTGCAGAAGTGGGAGGATACAA 1915124 30 100.0 38 .............................. TTTCTCTCTTTTCTGGCAGGTAATCCACTTGGAATATG 1915056 30 100.0 36 .............................. GAGGATTTTTTGAAAATTGGGAGAGTCGCAGGAGAA 1914990 30 96.7 39 .............................C TCCCAAGTATCTGTATCTAACTGATATCCTGCAGGACCT 1914921 30 90.0 100 ..G................A........T. AAGTATCATCTATATAATCAAATCTATTATAACCAGTTTTTATCCTAGATGTAACAAAATGAGACTTAATAACTATGATGCCTTTAGCAATTTCACTTCT A [1914896] 1914790 30 76.7 0 ....C.G.T.C..T.G...T.......... | ========== ====== ====== ====== ============================== ==================================================================================================== ================== 28 30 98.1 40 GTTTGTATCGTACCTATGAGGAATTGAAAT # Left flank : GTAAAGTGGAGAACTTCTCCGACACCATCGGACGAACAAAGGACAGCAGAATCAGGGAACAGCTTGAAAAGAAGCTATCCCAGGCCTTTGATGATAAAGAAAGCTTAGAGAGCGAGAATAAGAAATTTGAACGGGAAATAACGGAATTACGGCAACAAAAGGCCGGGCTGGAAAAAAACATTGAACAGGCTAAAGAAATATATCAGTTATTAAATTCCGCCCAAGGTGAGACAGAGAGAATTGAACTACGCTTGCGCTTGCGCCAGCAGATTCAGAAATCTATTGAATGGATTAAAATTTATCCGCTTCAGGAACCTTATCAGGAAATACAGGAAACCGAAGAACCCGGCATTGTTAAGATTATGAAAAGCAAATATATTGACAAGGTGCGAATTAAGTTTCGGGGAAGCCGAGACCTCCGGGTGCTATACCTAAAGAACCATGCAGAACTGAGCGAATAGCATAAAACCGTTTATAATATTCTGCCATGTTATCACCCT # Right flank : AGGCAGTAAATCTAATTTTATTAATATACAATAATTGCCTTTCTTGTACCTACAATAAAATAGGACAAAGTTTTGCCTTTTGTCTTCATATACTTTATGTCAATACGCTTTTTGAATTTACGACAAATTGTACAATTTACTTCTTAAATTCTATTCTCTGTATCATTCCGTTATAAAAACTAAATGTAAAAGATTAAAAATCAAAATTAAATTTGATTATTATGCATCTTATGGTAATATACTTATGTAACTTTAAGTTGTTAATTGGAAAATAAACTATGTTCGTTACGTTACTAATTTGAAAGGTTTGGTTTGATTCCAAGCTGTGCAAAATGAGATGTTTTGCACATGGTTAAAGGATGTGAGGAAATGTAGGAACGATATGCAAAATTATACAGTATTCTGACATTATCAAAAAATTAAAAAAGATTGCAAAAAAATAGTTTACCTAAAATTGATTATGCTGAAAAGAGGGAGGATTAAAATGAAAAAAAATATTT # Questionable array : NO Score: 8.96 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:-0.19, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTATCGTACCTATGAGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,9.41 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 4 1933246-1930002 **** Predicted by CRISPRDetect 2.4 *** >NC_017304.1 Acetivibrio thermocellus DSM 1313, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 1933245 30 100.0 36 .............................. TTCTTCAGGAAGTGAGTAAGGGTAATAAGGGGGATA 1933179 30 100.0 37 .............................. TGCTCAGAATATGGCTAGGCATTTACACGTTTGATGG 1933112 30 100.0 36 .............................. TGTTGGATGCCATACGGAGAGGCGCATTGGATTTTG 1933046 30 100.0 37 .............................. ATAATGACATTTATGGTACTGTTGTGGTAATAGACGA 1932979 30 100.0 38 .............................. TAGTGCATCTTTGGAAGACGAATGAAGAATTCAGAGAA 1932911 30 100.0 37 .............................. AACCTCTGTTTTTCGTCGTCCCAGTATTCCTTCCTTG 1932844 30 100.0 36 .............................. GGATAAACATTCAGAACTACTCTTTCAAAATACTCA 1932778 30 100.0 36 .............................. TTAAACCCACTTTTTTGAATTTATGATTATGTATTA 1932712 30 100.0 37 .............................. TCGCCTCTTTGGTATTTCGGGCGTAAACTGCAAAGAC 1932645 30 100.0 37 .............................. ATATTTAGGCTATACTCACCGGCATTCAGTTCCATTA 1932578 30 100.0 39 .............................. CTGGTATTCAATGTTCTTGCAAAATTGTTCCATTCAGAA 1932509 30 100.0 38 .............................. CCGATGACTCTCTTTGGTTGCTTGACGATAGTCAGAAA 1932441 30 100.0 37 .............................. TCATAGAGTATAAATCAGCCAAATCATTCCTAGCACC 1932374 30 100.0 36 .............................. TACTAACGTGTACCGTATAACCGACTATAAAAATCC 1932308 30 100.0 36 .............................. AAGGATAATAGTTGGGTTTTTGTACATAGTGTATGG 1932242 30 100.0 36 .............................. TATACGTAGCTCCCAGAATCTGTTTGAACTCTGTAA 1932176 30 100.0 36 .............................. TAAAACAAACTTCTACTGCCACTGGTCGGATTGTTC 1932110 30 100.0 35 .............................. TAGAAATTGGGATAAGCAGCTTTTAGAATTGCCAT 1932045 30 100.0 36 .............................. ATGTGGAGGTGGCGGTATGATATGTATAGGGCTAGA 1931979 30 100.0 36 .............................. AAAGTTTAAACCCTGGACGTTGTATGTTTGCGCCTG 1931913 30 100.0 39 .............................. AATACCCCAAAATGAAGGTTCAAGTCATTCGAACAACGA 1931844 30 100.0 37 .............................. CCAATTTTGTCTTTGTCCTCGTCAACACCTTGACCAA 1931777 30 100.0 36 .............................. TTAAATGATCCTCCGGTAACACTAGAAGCCGGAACA 1931711 30 100.0 37 .............................. AGCTATACCATATCAATACAGATCTTGCACCGTGATA 1931644 30 100.0 39 .............................. CACTTCCGGGATGGTAGTCAGTGCCATCGGGCTTGACAT 1931575 30 100.0 36 .............................. TCGTTCAGCCTCCCTATGCTACATACCGGATGTAAT 1931509 30 100.0 36 .............................. CCGACTGTTCGACGTAGACGTCGACAGGAGGAAAGA 1931443 30 100.0 38 .............................. TTGCAAGTCAGGTAATGCCTTTTGATACCGGTACCATG 1931375 30 100.0 38 .............................. AAGACACTGAGACTCTTTCTATTAGTATTGATGGAAAC 1931307 30 100.0 36 .............................. TGTAAATAAAGCTATGAAATTGAATGATTATATCAG 1931241 30 100.0 36 .............................. AGCAACAGAGCTACGAGTTAGGAGAAATGCCCGTAG 1931175 30 100.0 37 .............................. ATTGTATTGACTTGAACACTACCAACTGATAATGAAG 1931108 30 100.0 36 .............................. GAGTATAAGGCTAAATGGTATGGCAGAACGTACCAC 1931042 30 100.0 39 .............................. ACATTCAACACCAGCTTTCTGCCCTATGACCAACCTATC 1930973 30 100.0 42 .............................. GCCAACGTTCTAAAAATTCACATACTCTTATTTTTTCTGCTC 1930901 30 100.0 36 .............................. TCCTCAATCTGTTTTTCTGTAAACATCCACTAATAC 1930835 30 100.0 37 .............................. ATCCAAGGATGTTGACCAATGATAGTTTCATGTGATA 1930768 30 100.0 37 .............................. TCAATGACCAAGAGTGAAATTGCGAAAATACTTGCGG 1930701 30 100.0 36 .............................. TGGCCCATACTACATACCACGGTGGCTAGAAAAGGA 1930635 30 100.0 36 .............................. AGAATAGGCACAATCGGAAGTGAACAAGGAGAAATA 1930569 30 100.0 36 .............................. TTGCAGATACTACATCGGCTGGTATATCTTCTGGTG 1930503 30 100.0 38 .............................. TTAGTTTATAGGGAGATATTGAATCTCCCTATAATAAC 1930435 30 100.0 37 .............................. ACAAGGCGGGAATGGGTGAACACTTTACAACTGTATG 1930368 30 100.0 37 .............................. AGTTTCCGGCATCTCATCCCAAGTCCGTTCATCCAAA 1930301 30 100.0 38 .............................. TAAGTTGGGCTTCTAATAGAAGTTCTGGTGCTGTTGGA 1930233 30 100.0 38 .............................. CTTGATTTTGATTTTCAAGCGGATTATGCTTCAAAAAA 1930165 30 100.0 36 .............................. TATTACCATAGCCAAGCGGCGGTAAATATCTCACAT 1930099 30 96.7 38 .............................T TGTAATAGCATCGACAATAATGTTGTCTTGATTCAGTC 1930031 30 96.7 0 .............................T | ========== ====== ====== ====== ============================== ========================================== ================== 49 30 99.9 37 GTTTGTATCGTACCTATGAGGAATTGAAAC # Left flank : TAAAAAACGGTGTAACACTTTTTTAATTGTTTGAATACTATGATACCGTGAAGCAAAACAAAATAGGAAAGGATGAGAGGTATGGAGGAGAATAGAGGTTTTGGCTGCTTTTATGGTAATGACATTATTTGGTTGATAATTATAATTTTGTTTATTCTGTGCTTGTGTCCGGGAATTTTCGGCGGTTTTGGCGGATGCGGCTATAAGAATTGACCGACTGCATGTACATAAGAATCTAAAGAGGGGAGGTAATTGCCTCCCCTTTTTGTTATAATAGGGATATGCGGGGAATTAACTGAGTTGATGGGAGTAATTTTATTTATAAGTTTATGGTTTGTCGATGTGGAGTAGTGTAAAAAACCCGGGAGATCGACAAAGTTTGTTGATGTCTTTTAAATGCAGGATTATGAATAGTTTGAGTGATTTTTTTTATTTTTGTTATTGATTTTTATTTTATATGTTATTAAAATAAAAAGTAGGAATTATGCAGGTTCTATGGG # Right flank : TTCTGGCTACTCCAAGTTCCTAATGTTATATATGGTTTTATAGTATAAAGCCTTAAGCGAAAATGAATAGGACTGTATAATAAGGTTAAGGCTTTATATTCGCCTGAAGCGTAAAAACGCAATAGGAAGAATAAAATTTTTGCCGGGGATAGGCCAGCCTTGCAAACTGGCTGACAAGCGAAGTCTCCCCGCTTCCCCGGCAACAATTTCAAATAGGGAGACAGAAAGGGAGACGAAATATGGAATCTATGAAAGGGAAAGTCATTCGGGACATTAGGAACCAGGAAGCAAAAAGAAAGCAACTCCAAAAGGAGATCTTCAACCAGCGGTACAATGCTACGAAAGAGGCGAAGTTCATAGACAAGGAGGATATAAATATGAATAGCTTCCGGGCTATTCCTAAAAGCGTGATACAAGAGCTAGGCTTATCGAAAGCGGCCCTGGCTATCTATCCTGTCTTATGTGCAAAAGCAGATTTTGAAAAAAATAACTCTTTTCCA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTATCGTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [66.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 5 3481948-3480109 **** Predicted by CRISPRDetect 2.4 *** >NC_017304.1 Acetivibrio thermocellus DSM 1313, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 3481947 30 100.0 37 .............................. TCCTGGACGGTCTGGTCCAGGCTGGGGTGCTCCCGGG 3481880 30 100.0 37 .............................. TACCACCCACCCTTGAGGAAGTAAGAGCCTACTGCCA 3481813 30 100.0 35 .............................. TCCGGCTCGCCGCTCATGCAGTCAAGGGCAAGGAC 3481748 30 100.0 40 .............................. ACGTAACAAAAAAATCGAAATCATTGCAAATTGCATACTC 3481678 30 100.0 38 .............................. AGGAACTCCTGAAAGTACCCCTCAGAGGGTACAAACGC 3481610 30 100.0 40 .............................. GCTCTAAAACCTTCATACCATCATCCTTTCTTGACACCTC 3481540 30 100.0 38 .............................. TGATATTGTGCCATGAAATTTTGTTCAGGAAGTGCGTC 3481472 30 100.0 36 .............................. AAATTAAATGTGAAGCATCCAATGTCAATCTTTGTT 3481406 30 100.0 35 .............................. GTGCTTCAAGTTGTTCATCCCTGGTTTTAATATCC 3481341 30 100.0 36 .............................. TTAATTCAGTGCATACACAGCTTACCCAATGCATTA 3481275 30 100.0 31 .............................. ATCCAATCCAATCCAATCCGAATCCAATCCT 3481214 30 100.0 35 .............................. ATGTGAATCCGGAGGCGGGGGTTATAGCTACCCTG 3481149 30 100.0 38 .............................. TTATAAAGAGTTATGCCGGTTATATTTTCGCTTACAGT 3481081 30 100.0 36 .............................. AAATGCAAGTCGATACTATAACAGCAATTGAACAGA 3481015 30 100.0 39 .............................. TGCTGACTATATCAGAAAATGAACTTGAATCACAAGCAC 3480946 30 100.0 38 .............................. AATTTGGAGGGACGAAACTGTCAGACCCATCAATATTA 3480878 30 100.0 39 .............................. CACATTATATCTCAACTCCTAATTTCTCAATTTGTTCTT 3480809 30 100.0 36 .............................. ATATGGCAAACAATTTGATAACATCCTTTTCAGTCA 3480743 30 100.0 40 .............................. TATTTCCATCTACTTCAAGCATTGGTACAGATTTAAACCC 3480673 30 100.0 38 .............................. TGTTCCTGCGTGGAAAGGGAACAAAACATCAGGCTCAC 3480605 30 100.0 35 .............................. CTCCTATAGATTCTTCCTTTGGTTGGAGGCTTCTA 3480540 30 100.0 38 .............................. ATAGTGAAAACTTTCATTGCTTTCATACAAATCCCTCC 3480472 30 100.0 36 .............................. TTTTAATAATTTTTTCCCATCCTGCATGCACAAATT 3480406 30 96.7 35 .....................G........ AGGTCTAACCAGAACAGTATAACAAGGCTTATCTC 3480341 30 100.0 39 .............................. ATTCTATACCTATCGCATTTCTATTGTTTTTTATAGCAA 3480272 30 100.0 36 .............................. GATGGTGCGGATTTGAAGGATGTGCCGTTCAAATAC 3480206 30 96.7 38 ..............A............... TAAATTTTCAGGCAACTGTTTTCAAAAGCTTTGATAAA 3480138 30 83.3 0 C.........C.T......C.....A.... | ========== ====== ====== ====== ============================== ======================================== ================== 28 30 99.2 37 GTTTTTATCGTACCTATGAGGAATTGAAAC # Left flank : CTTGAGAAACATCTTATGGGAGAGCAGGAATATAAACCATACGTTGCTTCATGGTAAGGAGGATGTTTAAATGTTTGTGATTATGGTTTATGATGCAGGAGAGAGAAGAAACAGTAAGGTTTTAAAGGTGGGAAGAAAGTACCTTCATTGGGTTCAAAATTCTGTATTTGAGGGTGAGTTGACGGAAGCAAACTATCATAAGCTTAAGGAAGAGGTAAGACGCAAAGTAGACAACGAAGAGGATTCAGTTATATTTTACAAATTCAGAACGATGAAGTATACTGAAAGAGAGGTTATTGGAAAGAATGTTGATCCCAATAATTTTATCCTATGAATTTGTCGATGTGGAGTAGTGCAAAAAACCCGGGGGATCGACGAAATTTATTAATTCCCTTTAAACGCTGATTTGTAGCTGTTTAGAGGGATTTTTTGTTTTTTTGTATTGATTTTTATTTTGCAATTGGTTAAAATAAAAAGCAGAAGTTTAGCAGGCTTTATGG # Right flank : CGTTTATTCTTTCCCTCTTCGTCAACTTTCAATATCCGTGTTTTTTTTACCCGTTAAGGATTGAACCTTTTGTTATCGTATAACATATAATCTTAAAATTTTCTCAAATGGCAATAGTAACCTCGCATGTATTAATAAATATACATTGCAATAATTAGCATTTTGGCATCGACATATTATCACGTATTTAATAATATGTAAGACGAAATTTACTTAAATTATGGGAACTTCCAGAGGTGAAATACATTTGCTGTTGAGGTCGGTTAAAACTCAGTTTAGATTAATGGTCAACAAACGTAATTTTTGGGTTGCCATCTTCCTGGGACTGTTTTACTGTATAATAAGTTATGCCCATTCGCTATATATTTATCGGGGATATGATGTTTCGGGAACTCTTAATGCAGCGTCGCTTTTTATTGGAAACGCCGATACGGCGCTTTTTGAAAAGTATTTTCTAATTTATGTTTCCGTTTGTGGTGATTTTACCATTTTCATTTTCT # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.68 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //