Array 1 612239-608854 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGEKB010000001.1 Lachnoanaerobaculum sp. Marseille-Q4761 NODE_1_length_1590460_cov_36.385962, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 612238 28 100.0 33 ............................ TACAAAATCTCTATAATTGTAATCTAAAATTAG 612177 28 100.0 33 ............................ CTAAAAAGTGGTACTTATTCAAATTTAGATGTA 612116 28 100.0 33 ............................ TTGAGTATGTGTATTGTACCCTCTCCCAGCAAA 612055 28 100.0 33 ............................ CCCCTTATCAATTTGATAGGGGTTTTTATACAA 611994 28 100.0 33 ............................ CATTTTATCCAACTGTAAACTTACAGGATTTTA 611933 28 100.0 33 ............................ TAAACTTGATAATCTTGTAAATGATGCGGATTT 611872 28 100.0 33 ............................ CGAGGTATCTCAACCCGATTAGAGGGTTTTGGC 611811 28 100.0 33 ............................ TGTCTCAACTGCATTATCAAGCTTTCAGATAAG 611750 28 100.0 33 ............................ TAACACATTGGTCTGTCTATTACAATAGATTTT 611689 28 100.0 33 ............................ CAGAAATGGCGGTTGTGTTGCAATGAAAAGACA 611628 28 100.0 33 ............................ CATTATTGTACAAATCTGGGGTACATACAAGTA 611567 28 100.0 34 ............................ CACAACCGCCGTTTCTGTTAAATTTATCGTCGTT 611505 28 100.0 33 ............................ CACTATGTTAAAACTTAATACATCATCAAATAC 611444 28 100.0 33 ............................ TCAAAATTATCAGAAAATCCCAAATAATTCATT 611383 28 100.0 33 ............................ TCAAAATTATCAGAAAATCCCAAATAATTCATT 611322 28 100.0 33 ............................ CTCATTTAAGAACCATGATATACCTAATACGAT 611261 28 100.0 33 ............................ TTAAAATCATTAAATAATTTTTCAATCTTCTTA 611200 28 100.0 33 ............................ CTCCATCTCTCAAAATCAACTTTTCTGACACCT 611139 28 100.0 33 ............................ CGAGAAATTATCAGACAATTCTAAATATTCTGA 611078 28 100.0 33 ............................ TAAATATATAGAATATTATGATTTTGAGATATT 611017 28 100.0 33 ............................ CTACTAACCTGTCACTGAACCTTGAAAAACAAA 610956 28 100.0 33 ............................ CTATTATTTCAAAGTCGGACGGTGGTAAAAAGT 610895 28 100.0 33 ............................ CAACGGAATATCCAAAAATGTATCTAGCGGTTA 610834 28 100.0 33 ............................ TATCCTTGATAATTATTTCATACTTGGAGGGGG 610773 28 100.0 33 ............................ TAATCAAACTATGCCAATATTCGACAAAGTATA 610712 28 100.0 33 ............................ TAGGGCAACGAATCGAGGGGGCATTACAGTTGA 610651 28 100.0 33 ............................ TAATCAAACTATGCCAATATTCGACAAAGTATA 610590 28 100.0 33 ............................ TAGGGCAACGAATCGAGGGGGCATTACAGTTGA 610529 28 100.0 33 ............................ CCCTGCCGCACCAACCGCCGCAAGCGGTAAAGT 610468 28 100.0 33 ............................ TGGACGGTATAGCCATGTATGTGAATTTCTCAT 610407 28 100.0 33 ............................ CATTCAAGGGCGTGTACTTGCTCTTTGTGTCTT 610346 28 100.0 33 ............................ TAAATTCTTATGAAATTCTTAAGATGAATTATT 610285 28 100.0 33 ............................ CTTGTTGTATGTTTTTCTGACTTATAACAGGTT 610224 28 96.4 33 ....................T....... TAATCATTTCATCATATATAAAAGATAATATTT 610163 28 100.0 33 ............................ CCCTGTCAACTTATACTCTTGTTGTACTGAATT 610102 28 100.0 33 ............................ TGAATGATTTTAATTTTCAAATTGATATGATAT 610041 28 100.0 33 ............................ TAAGTCAATGAACCAGGCGTGGTTGATAGGGAA 609980 28 100.0 33 ............................ CCATCTACAGATATAGTGTTTATTGTATCTTGG 609919 28 100.0 33 ............................ CTTCAAAGTATTCTGAAATGATTAAAGATGCTA 609858 28 100.0 33 ............................ TATGTACTATTGGGTAGATGCTGATGGAGTATA 609797 28 100.0 33 ............................ CGCCACGAGTTCACGCTAACCCATCCGACAAGA 609736 28 100.0 33 ............................ TGATACACTGATCCCATATCTGATATAAGATAT 609675 28 100.0 33 ............................ CCTCCTAAAGTAAAATATTCGTCTAAAATTTGT 609614 28 100.0 33 ............................ CTACAACTAATTTAATTGAAACCGATTGGAAAA 609553 28 100.0 33 ............................ TGTAATTTATTACACTTAAGAAAATAGCCGACG 609492 28 100.0 33 ............................ TCAATATCAGACTTAGTAGGCTTTTTAGAAAAA 609431 28 100.0 33 ............................ TGGCTACAGCTAAGAAGTTGCCATCGGGCAGTT 609370 28 100.0 33 ............................ TACAGACATCTCTATTACCTCCTAATACTAATA 609309 28 100.0 33 ............................ CGAGTTCGAGCCACTAAGCAAGTATAATGATAA 609248 28 100.0 33 ............................ TGCAAGCATTTTTTATGACTTTATGCAAAAAAT 609187 28 100.0 33 ............................ TACAGATTTTTGGAAGTTATACCATTCTTATAA 609126 28 100.0 33 ............................ TATATCCAGTGTAGACCTGTAAGACCTTGTATA 609065 28 100.0 33 ............................ TAGTACCTGAAACTCAGGGCAGTCGTCAGTGTG 609004 28 100.0 33 ............................ CCCGGATAGGAAAGAAGAAAAATTCCAACTTAA 608943 28 96.4 33 ...........A................ TCAGGGCAATTCCCTTATATCAAGACTTGGAAA 608882 28 85.7 0 ..A..............A..A..T.... | T [608856] ========== ====== ====== ====== ============================ ================================== ================== 56 28 99.6 33 GTGTTCCCCGCGTAGGCGGGGGTGATCC # Left flank : AAAGAGAAAGATGTTATTATCGAAATAGGTGCAGTAAAATCTGAAGGTGGAATAATAAGTGAATTTCAAAGTCTGATGAGCTATGAAGGTATATTACCAAAACATATAGTGGCAATTACAGGTATTACCACTAATATGTTACAAAACAGTGGGAAGAGTGCAAAGTCGGTATTAAAGGAGTTCATAGACTTTATAGGTGATAGAGATATTATAGGGTACAATGTGAACTTTGATATCGAGTTTATAGATATTGCTCTATCAAAACTTGAACTTGAAAAATTAAAAAATAAGCGATATGATTTAATGAAGTTTGTAAAAAATGAAAAACTTTTTCTGACAAACTATAAATTACAAACTGTGATAAAGGAATATGGGGTTGGTGATGAAGTACCACATAGAGCATTGGAAGACGCAAGGCTAATATACAAGCTTGCTGTAAAAGTAAATAAATTCAGGGATTTATATAGTCTGACATAGCGTGTTTAAGGGATCTTATTACT # Right flank : TTATATTAAAGTTTGTGTTCCCCCTCATATACAGAAGTACTCTGATATATTTAAACCTGTATTTATTAAAGAGATTGTAGCTAGGTAATACTATAAAGAGAATGCAATACCGTCACCTGCTTAATATATCCTCCAATGCATCAGTATCCAGTATTTTGATTACGGGGGGATTATAAAAAATAATTTTATCGGCTTCCATGCGGCTTAATTCTCTGTGAAGAGATGTTCTGGATACATTCATAAGCATTGCCCATTTTGAAATGCTGTCAGGAATTGTGACAGTATCTTTACCTGATTGACAGGACTGCATTAAAAGCCAGAATGCCGCTTTTTGTGCGATGCCTCCATAGGAGAGCAGCTCAAGTCTTTGTTGAAGCATATAAGTTGCAGTGGAAATTTCGGTGGTGAAATTTTGTAATATGCATAGATTTAATTGCATAAGCTTTAAAAGTTCATCTCTATGTAAGAGCATTATCTTTGCAGGCTCAATTGCAACTATA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTAGGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.90,-13.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1088326-1089418 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGEKB010000001.1 Lachnoanaerobaculum sp. Marseille-Q4761 NODE_1_length_1590460_cov_36.385962, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================= ================== 1088326 36 100.0 39 .................................... TTTATATGATGCTTTATTCTATTCAACAGAAGTTAGTGA 1088401 36 100.0 42 .................................... TATAGATTTACCAGATGATGTGGTTGAGAAAATTATAGAATT 1088479 36 100.0 36 .................................... AAGCAAATAGCTCATATTTAGATAGATTTAAACAAT 1088551 36 100.0 49 .................................... AGCAACAGAGCAGTATAAAAAGACTGGTGATAAGAAATTCTCTAATAGA 1088636 36 100.0 40 .................................... CATTCTCTAACTTGTAGAGTTCTGCTGCACTTGGGTAATT 1088712 36 100.0 36 .................................... CCAATTACCGCACATACAGCAGTCGCCTTAGCAACC 1088784 36 100.0 40 .................................... AGGTTGCAAATGGTGATTTAAAACATCAAATAGATGGAAC 1088860 36 100.0 38 .................................... TAAAATCCAGTACCTGAAATATTATCTTGATTATAAGA 1088934 36 100.0 36 .................................... GATGTTGCTTTAGCTTTAGTTATGATTGAATTTCCA 1089006 36 100.0 40 .................................... AGGTTGCAAATGGTGATTTAAAACATCAAATAGATGGAAC 1089082 36 100.0 42 .................................... ATAGGATAAGCCATATTTATTACCTGTGTAGAATTATTAACT 1089160 36 100.0 43 .................................... AGAATTTCCAAATTATACAATTAAAAGATTCATCAGTTAAAGA 1089239 36 100.0 37 .................................... AATCAAAGTTGCCTACTGTATTAGCATTTATATAATT 1089312 36 97.2 36 ..............C..................... TTTGTATACTCAAACATTGCATAGTAGCCGATTGTA 1089384 35 91.7 0 ..............C...............-....T | ========== ====== ====== ====== ==================================== ================================================= ================== 15 36 99.3 40 GTTGAAAGATGATAACCCCGATAAGGGGACGGAAAC # Left flank : TTTAAAGTGGGAACCAATGGATGGAGGTATTATTCAAAGTGTTTTTAATATAGGGAAGAAAAATGTAGAATTGACTTCATTTTTAGATAATAAACAATGTGTAGCTTATTTATGTAGAGATTGTAAAAAAATTGTTATAGATGTTGGATAAAGGGTAAGGTACTTGTATATTTTATTGGCTATTTAAAATATTGATGAGGATTATAGATGTCTCCACAAATAAACAATAAATTTATATACTTGGATAAAAAGGAAGTATGTGCTAGAATAGAATAGTCTTAAGAATCCAATATTGGTGTGATTAATTATGCATTCATTCATACTTTAATCTGCATATATATTCTAAAATTTACAATTTTGAGACGGCCCTTGTAAATAAAGGTTTTGAAGCACCTCGAGTAATATATGTTACGAGATTTTGGGCGAAAAACGATTGTTAAATTTTAGGCACGCTAAAGCCCCTTGGAAGCCTTATAGAATAAGGGCTAAAAGGGGGTAGG # Right flank : TTCACTTATTTACTGAAGGGCTATGGGAGAAAACAGCATAAGAAAAAAGTGAAAATTTGATTAGAGAGAATAGATGCCTCAATTAGGCAAAAAAAATCCTGACAAGCCACAGAGTTAAAAAACTTGTACTTGTCAGGATATTTCTATTTTTAGAGGGATTAAAATTATTATTTAATAGCAATCCCTTATTACAATATTTTATGCTACCCCCCATCCCCCACCGCTATAGCAGGTTTGTCTACATAAAAGCCCTCGGAGCTATGCGCTTTAGCATATCAAGCATCTTATCATCGGGAGTGATAAGCAAAAGAATATTCTCTCCGTTTTGTGGAAGAAAAAGGGAGTAGGAAGTATTCAAATCTCCGGTGGAGCAGTCAATTTTTTTTACATTTCTTTTCCCGTTCATCTTGGGGGATGAAGCGGGGAAGGCGGTTTCCAAAGTCTTTATATCTATATTCAGAAGATTTTTTCTTTTGGTTTTATTGTATATGGCATCAATT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAAGATGATAACCCCGATAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.60,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 3 1558107-1559127 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGEKB010000001.1 Lachnoanaerobaculum sp. Marseille-Q4761 NODE_1_length_1590460_cov_36.385962, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 1558107 36 100.0 41 .................................... AAACGAGAATATATTTAATTATTCTCTATCTATATTATCTT 1558184 36 100.0 40 .................................... TTAATCTCACCTCTTTTAATAGATAAAAGAATCTCATTTC 1558260 36 100.0 39 .................................... GTTATCATATGTAAGCATACTTATTGTAAGACCTGGCTC 1558335 36 100.0 44 .................................... TGAATGTAGTCACCTAGTACCACAGAATTGGAGAGTAAATTTCA 1558415 36 100.0 38 .................................... AACTCTGTTATCTTTTCGATAAAGGGCACAACTGCACC 1558489 36 100.0 39 .................................... AACTTTAATGCTTTTATTAATGCATATCCTGTGTATTCC 1558564 36 100.0 34 .................................... ATATAATGTCTCCTTTCAGACAAATATTTTTTAT 1558634 36 100.0 42 .................................... GAAAGATTGAATCCTTCGTATTATCTTCTTTTGTACTGAAGT 1558712 36 100.0 37 .................................... CTTGTGCTGATTGTATCTTAGCAGTAAGTACATTACC 1558785 36 100.0 41 .................................... AAAATTAGTAAGTACCGAAAGTATACTATTAATGACAGATA 1558862 36 100.0 40 .................................... CTTCCGTCTTCTCTATCTGGGAGTGTAGAGAAGACTCATT 1558938 36 100.0 39 .................................... ATACACTTCTCAAGATATCTTGCAGGAACACCTATCTTA 1559013 36 100.0 42 .................................... TTCTGTGACACTAATCTCTTTTACACTTGCTAGCTCAGCTTT 1559091 36 83.3 0 ........C...C.C.................C.TA | T [1559109] ========== ====== ====== ====== ==================================== ============================================ ================== 14 36 98.8 40 GTTGAAAGATGATAACCCCGATAAGGGGACGGAAAC # Left flank : AGAGTCTAAAAGATATACTTTTTATAAAAGTAAAGGCAAGAAACTTACTTTAGATACCATATAAAAAACATAAAATAAAGAAAAGGATGGTTATACTCAGAAATTTGAGGGATATGTATGTTCAAACCGCAGTGGATGCGAACACAAGTCTAAATGTTTGCACAGATACAATACTGAAGGTGTATAAAGACTTTATTTTATTTGCAAAGGGAAGAAAATAAATGGTAATTTTATAGACTTGGATAAAAGAGAAGTATGTGGTAGAATAAAATAGTCTTAAAGCTCAATATTGGTTATGTGATTAATTATGCATTCATTTAGTTTTAAATGTGCATATATATTCTAAAATTTACAATTTTGAGACGGCCCTTGTAAATAAAGGCTTTGAAGCACTTCAAGTAATATATGTTACGAGATTTTAAGGGAAAATCGATTGTTAAATTTTAGGCACGCTAAAGCCCCTTGAAAGCCTTATAAAATAAGGGCTAAAAGGGGGTAGG # Right flank : ATTATTTTTATTATTATGATATTGCAACAATTGTAAATGAACGAAAATATATTAAGCTCATATGATTTAATATCATCTCTAAAATAAAACTATAACGATAAACTAATAAAAAAATTCAAGTCTACAAAATAGGAGGATAATATCGTCTACCTTCGTCGGGGTACAGTTTTTATTCCACAGACATTATTATGATTCTCTCTATAAGTCTACTATTCTATAAAATATAAAACTAAGATTTATCGGATCTTTCCATATAATTTTACTTTGACAATAAAATGTGGTTATAATTCTAAAACTAAAACATCTGTATAACTGTAGTTAAGCCATTAAAAGTGGTCGTGTGATACAAAAATACTACTAATTACAAATAAAAACTATCAGATATATAATAGGCACATAACAAAGAGCCGGAGAAAAACTGAGAAGTAAAGTTAACCGGTTAGCCAAATTGTTTTAGTATATAGGAGGATTTCATTATGGAAGTTATCATTATAGCGGCA # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAAGATGATAACCCCGATAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.60,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 4 1562566-1563573 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGEKB010000001.1 Lachnoanaerobaculum sp. Marseille-Q4761 NODE_1_length_1590460_cov_36.385962, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 1562566 36 100.0 40 .................................... TAGGCTTTCTTTAAATCCTCCATGGTGTTTATATCTGTAG 1562642 36 100.0 41 .................................... CATATTGGGTAAATCAAAATAAGGTATTACCTGTAATACAT 1562719 36 100.0 37 .................................... TTTAATAATTTTGATGTATGTAAGTCAATTTCTCCTT 1562792 36 100.0 39 .................................... GGTGGTGGTCAGAAAATGGCTTACTGTACTCTTAATGAT 1562867 36 100.0 35 .................................... TATTACTGCTAGTAATCTCGGGTCTCCGAGTGGAA 1562938 36 100.0 39 .................................... TAAGCTGCCTTTGCCAGCACTTGTTGTTTGGTGACCATC 1563013 36 100.0 37 .................................... TTTAAGTCTGCCATTATACATCTCGTCGCCTACTTCA 1563086 36 97.2 43 .............................T...... ATTTATTTAGAACCTCATTTATTATGGACTCGTACTATGGATA 1563165 36 97.2 38 ................T................... TTTTCAAGAGCATAAAGCTCTTTAGCTGTCGGGTATGT 1563239 36 100.0 37 .................................... GGTCTACCTGTGCATAAAACCCTTGATCCATTCTTGC 1563312 36 100.0 38 .................................... TTATACATTGGAATTTGATAATAAGAATTAGTAGAATC 1563386 36 94.4 41 .................T...C.............. GTGATCCTTTGGGAACTTTCTTAAATACTGTGATATAAACA 1563463 36 94.4 39 .....................C....A......... CAGAGAGATAAACCAGATAGTCCAGGATTATGGGCTAGA 1563538 36 86.1 0 .....................C........A.C.TA | ========== ====== ====== ====== ==================================== =========================================== ================== 14 36 97.8 39 GTTTACATAAGATAACCCCGATAAGGGGACGGAAAC # Left flank : AAGGTGGCTGCGCACTTGGGGCTTGCGTTCCTGGAACTCGCCAAGTTGGTCACTGAGGCCGAGGCGGCGAAGAAGCAGAAGCTGTAGTGGCGAAAGCCACTTTATATAATTAAGAAAAGCAAAGGGGCAGACAAGTTAGAAATGCAACAATGGAATAAGGTAAAGAAAACGAAGTAAATTTAGTTACAGCACCTGAATAGTGTTGTAGCTTTTTTAGTTTTATATTCATATCAGTAGTATTGTAGTAAAATATGTGATAGAATAAAAAAAGTCTTATTTACATAAGATGTAATATTTTGGCAATTTTAGTGTGTGATATTTAAACTTAAGAATATTTTTTTATTAAAAAAAGTGATTTTGAGACGGACCTTATAAATAAAGGGTTTGTAGCACTTGTAGTAACAAATGTCACTAAAATTTAAAGAAAAATAGCTTGTTAAATTTTAGGCACGCTAAAGCCACTTGAAAGCCTTGTGTTATAAGGGCTGAGAGGGGGTAGG # Right flank : ATAATTTAATATCATATCTAAAATAAAATCATAAAGATAAGCAAATAAAAACCAAGTCAAAAAAATAGGAGGATAATACCTCCTATTTTTGCTGGAGCACAGATTTTTATCTTCCTCGTATGTTCCTATGATTATAAGTACAAGTCTACCATTTTATAAAATATTCCAGATAAAAGATAAAACTAAGATTTACCGGATCTTTCAATATAATTTCACTTTGACAATAAAATGTGGTTGTAATTTCAAAACTAAAACATCTGTATGACTGTAGTTGAGACATTAAAAGTGGTCGCGCGACACAAAGATACTACTAATTACAAATAAAAACTATTAGAGATATAATGGGTACATAACAAAGAGCTGAAGAAAAACTGAAAAGTAAAGTGAAACGGTTAGCCAAATAGTTTTAGTATAGGGGAGGATTTCATTATGGAAAGTATTATCATAATGGCAGCGAAAAAGGTCCTGATAAACCCGGCAGTCAGGATGGTCATAAAGGC # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTACATAAGATAACCCCGATAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.60,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 5 1577172-1578826 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGEKB010000001.1 Lachnoanaerobaculum sp. Marseille-Q4761 NODE_1_length_1590460_cov_36.385962, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 1577172 36 100.0 38 .................................... TAAGTCCCTCAACATCCTTATCACTTAATTGATACATG 1577246 36 100.0 37 .................................... ATATGTCAGTTGATATAGATAAAATCATTAATGGTAC 1577319 36 100.0 42 .................................... TATATCAACTGACATATTTCATACCCTTTCGTTTAATATATT 1577397 36 100.0 36 .................................... TGGAAAGATTGGGATGATGAAGAGTAATCGTCATCC 1577469 36 100.0 36 .................................... TTATCAGCACTGGGTATTAACGATATCAATTTGAAA 1577541 36 100.0 37 .................................... CATTATTCTTGGAGTTAAAAGAGAATACCGATGAAGA 1577614 36 100.0 37 .................................... TTGGTATATAGAAATATTCTAAGAAATTCTTTCTTTC 1577687 36 100.0 38 .................................... CATATACTCATACCACTCTGTTCATGCTGATAAAATAC 1577761 36 100.0 38 .................................... TGATACATATAATAATATGCGACAATGTATCTTAAATT 1577835 36 100.0 34 .................................... TTTCTCCTTCCATGGAATTAAATTTGTTATTACC 1577905 36 100.0 36 .................................... CTAAGTCTTCGTTTACTTCCAGTTGATTTAAGTAAG 1577977 36 100.0 38 .................................... GTTATTTCTGAACTTTTAAAGCTTGGAGCAGGAAGAGT 1578051 36 100.0 40 .................................... ATATATGGGGCTAAAATACGATTTCGTATACATCTATTTT 1578127 36 100.0 36 .................................... CTGACAAATACGCCGATAGTCGACCAAGCGACTGTA 1578199 36 100.0 36 .................................... CTTAGATGTACCATACTGATGGAACACTACAATAGG 1578271 36 100.0 38 .................................... TGTACCTAAGAGTGCTTAGGAGCAGTGTGGCAGTGTGT 1578345 36 100.0 40 .................................... AACATAACAGAACGCTCTGCTATATTTATCATTATATTTG 1578421 36 100.0 36 .................................... ATAAACGCTGTGGTCTCTGTTGTGTAATCCTCTTTT 1578493 36 100.0 38 .................................... TGGAAGCGCATGCGATAAAATACTCTGCCGGGTATGCA 1578567 36 100.0 42 .................................... TATGGTCACGAATTAGAAGTTCAAGAGAAAGATAAAGAACCT 1578645 36 100.0 36 .................................... TTAAAAGCAGCAACTATAGAGTTTTGAATATCCTCT 1578717 36 100.0 38 .................................... TCTGAAAAGCTGTCAACTAAACTAAAGATATAGATTAT 1578791 36 80.6 0 .....T........C................ATTTA | ========== ====== ====== ====== ==================================== ========================================== ================== 23 36 99.2 38 GTTTACAGATGATAACCCCGATAAGGGGACGGAAAC # Left flank : GCACTGGCTTATTGCGATAATTGTGGCTTTCAATGGAATAATACAGGGACGAAAAGACCTGAGATCTGTCCAAGATGTGGCAAAGAAGAAATGACCATGATAGACAGAATGTGCGGCTATATTGCCTTTACCAAAATACATGGCAAATCAAGACTTAATGATGCAAAGATGGCAGAGATTCGAGATCGTATATCCATGTAGAAACAAAATATATCAGCATACAGGTTTTGTATGTACTTGGATAAATTATAATTATATGATAGAATAAAAAGGTCTTGAAAATGATTGCGATTTTAGAGTTATATTACTTATTATATTTATAAATTTGTATGTATTTATATTCTAAAATCTATCATTTTGAGACGGCCCTTGTAAATAAAGGGTTTAGAGCACCTCGAGTAACAAATATTACGAAAATTTAGCCAAAAAACGATTGTTAAATTTTAGGCACGCTAAAGCACCTTGAAAGCCTTGTATTATAAGGGCTAAGAGGGGGTAGG # Right flank : AAGAATATGTTTATTTTCAAATTTTATATCTTATTAAAGTAAATTCTACTAAATCATATAAGTTATATTAAATGGAGGTCGTATCAAGGGCAACAAAGAAAAGGATATCACACAAAAGATACTTGAAAGGTATAATGATGTATTTGCAGATATTATAAATGTATTATTGTTTGATGGGAGGCGTGTAGTAACTGTTATTGCTGATGACGGCAATGACAAGGGACTATAGATTTGAAGAGACAATAAACGAGTTAAAGGGAAAGGAGCAAGTGACTATGTGTGAAGTACTGGATAGAGTAGAGGCAAGAGGGATAGAAAAAGGGATAGAAAAAGGTAGACAAGAGGGGATTAAAGAAGGGACTATAAATGTTCTTATTTCTTTGGTAAATGATGGAATTCTAAGTGTTTCAGATGCGGCAAAAAGAGCGAATATGAGCGAAGAAAGCTTTAGAGACATTTGCAAACATAAACAAATAAATCCATAGAAAAACCAATAATAT # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTACAGATGATAACCCCGATAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.60,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-86.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA //