Array 1 2287-2708 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOMC01000072.1 Halococcus morrhuae DSM 1307 contig_72, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 2287 30 100.0 35 .............................. GGCACGTCGAGCGACGCAAGCCTCCCCGTCCAGAA 2352 30 100.0 34 .............................. GTCGGTCTCGTCATCGTTGAGCATCCCCGCAACC 2416 30 100.0 35 .............................. TGCCGTTATCCGCGCAACTCCCTCAGATTGGGGGA 2481 30 100.0 37 .............................. ACCCAGCCGGATCGTGACGACGCACCGATCCTCACCG 2548 30 100.0 36 .............................. GAGGTCGAGCTCGTCGAGGACGTCCTCGACGGCCAG 2614 30 100.0 35 .............................. GCAACCACTACGGGGACCTCTACGGCTTTACGATG 2679 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 7 30 100.0 36 GTTTCAGACGAACCCTCGTGGGGTTGAAGC # Left flank : CCGGGTGGGTAGCCGTCCACATCACGTCAGTTGTGGACGGCTCAGTAGCAACAGCTGTCTTTTATATTGTTCAATCTTTCTGATTTTCGATATGAAATTGGTATTCACGACAGGACGTGCATAGAAACTGACGCAATGACCGTGGTATCATGATCTGAGACTACTGGCAGTCGCCGAATTGGCTTGTATATTCGCTATACTCCGAAGTTCTGGNAAACTGACGCAATGACCGTGGTATCATGATCTGAGACTACTGGCAGTCGCCGAATTGGCTTGTATATTCGCTATACTCCGAAGTTCTGGCGATCGACAATGCCGGGATGTGAATCGTGCAGCTACATGCGATCATGACTACTCAAGCGGGCGCAAGGACTGACCGAAGACCGCCGATTTTCGCTACGCTCCATCGACCCACGGGGGTTCGGCGGCTACTGCTGGTCAACGAAAACGGTATCCGATAGACGATGCGTAGCAGCTCTATGTCCGCTCTCTCGGGCATG # Right flank : GGGCCGGATTACTCCGGGCTCGACATCACGATCACCGGTTTCAGACGAACCCTCGTGGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTCGTGGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.60,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 2766-2471 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOMC01000126.1 Halococcus morrhuae DSM 1307 contig_126, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ============================================= ================== 2765 24 100.0 45 ........................ GAGCTCATCGGCCCGGACGGTAGCGGAGATCAGGAAGACGAAAAG 2696 24 91.7 43 .........A...........T.. CAGCACAGAGTATTGCAGGTCTGTATCACGTTGATCGACACAA 2629 24 100.0 43 ........................ GAGGCTAATCAACACGGAACGTGGCGGATATCAGAAAATCAGT 2562 24 87.5 44 G........A.............T GAGCTCAATCGGCAAGGTGGAAAGCGGAGACTAGGAAGACGAAA 2494 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ============================================= ================== 5 24 95.8 44 AGAGAGTACGTTTCGTGTGCTATC # Left flank : TGAACCCCGTGCGGATGCTCTTCGACGAGGTAACGGACCTGATCACGTCCCATTCGCGCGACGAACTGGAAAGTCAACTCACAGAGCTGACGGAAGACCAGGAAGAGCTGGCGACGAACTACGAGGTCGATTCGCTTGGTGCGTTCCGAGAGCAGCTCGCTACCGAAGAGCTCTCGGCTACGGAGCTTCGTGACCGTCGCAACGTGATCACGACGTGGAAGGCGATCAATACTGAACTTGGACTTTTGAAGCATGCCCTCCAGCTGTACGATGACGTCGTTGAACTCTCTTCGCCGCGGATAGACTCTCCCTCGACACTCGCCTGATGGCTATCTTCCTCGCTAATCGGGCGAACTTGCAAAGCAAGCGGCTCCACGGCTGTATCCAGAATCGACTCCACGGTACGTTCGAGAACGTCCGTCGTCGACGGACTGAATCGCGTGAGGATGGCCCGTACCGGGACTGACGATGAGGATTACTACTGGATAGAGAACCACCAA # Right flank : CTTCTATCTTCTCGCGCGTCTCAATGACTAGTTCTGGATCAAGGTCGAGTTGATACTCGAAGTACTGCCCACCACTCCGTCCTTGATTTCGCTTGTCGCGTTGCAGAAATCCCAACATGTGGAGATCCGCGAGATGATCCTGTATACTCTTCAGCGATGTCAGTGGCGTCGTTGCCCAGGATTCTGCAACCTGTTCATACGTCTCTCGAATTTCTTTGGAACGCGCCGGAGTATCATCACGTTTCTCGAGGCGTGCAATCGTCTCTAGGACATACTGCGAATGATCCGTCTGGTCTCGTATTCGATTGGCGAGTCGTCCACGTTGGACGAGTTCACGAGCAGTCTCGATATGGTCATCAATCACACAGCTATCGCCTGCTCGTTCGGCAACCTCTCCCCCGACACGAAGCAAATCGATCGCCTGGCGAGCATTCCCCATATCTTGTGCCGAAATCGCTGATGCCATTCCAACCGCGGATTGCTCCCATCCGTCTTCGACA # Questionable array : NO Score: 2.85 # Score Detail : 1:0, 2:0, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGAGAGTACGTTTCGTGTGCTATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 61-640 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOMC01000073.1 Halococcus morrhuae DSM 1307 contig_73, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 61 30 100.0 35 .............................. AGCTACACTTCGACCTCGGCGAAGTGCTCTGGCTC 126 30 100.0 35 .............................. AATGAGTTCGGGGCATGATAACCAAAATCGACTCA 191 30 100.0 34 .............................. ACGGTCTGAACGGCAACAGCACGTGGTATAGCTT 255 30 100.0 36 .............................. GCACTGTTCGTCGCGCTGCTGATCGGCCAGCTCGCA 321 30 100.0 38 .............................. TGCTGGCGCGAGTGACGGGGTCGACCTCTACACGACCG 389 22 66.7 0 ....................NA-------- - Deletion [403] 411 30 100.0 38 .............................. TGCTGGCGCGAGTGACGGGGTCGACCTCTACACGACCG 479 30 100.0 36 .............................. TTCCTGGTGGCGGGGACGCCCTGGTCGTGCTCCATG 545 30 100.0 36 .............................. TTATCGTACAACTGCGCGCTCCACGTCTCGCAGCGA 611 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 10 30 96.7 32 GTTTCAGACGAACCCTCGTGGGGTTGAAGC # Left flank : GACGAACCCTCGTGGGGTTGAAGCGCGCTCGTTCTGGAGCGCCCGGACGGCAGCGACCGCG # Right flank : | # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:-0.33, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTCGTGGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.10,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [28.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 60-352 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOMC01000074.1 Halococcus morrhuae DSM 1307 contig_74, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 60 30 100.0 36 .............................. AATCCAGAAACTCGAAGCGGGCGAAACCAGCGGCGA 126 30 100.0 35 .............................. TTCGCCTTCGCACCGCGCGAGTAGCGGAACCAGAT 191 30 100.0 38 .............................. AACGGGCTCGTGATCGGCCGGCGTGCCCGTCTGACCCG 259 30 100.0 34 .............................. TCCTGCTGGCCCATGCCTTCGAGACGCTTGCCGA 323 30 93.3 0 ........................C...A. | ========== ====== ====== ====== ============================== ====================================== ================== 5 30 98.7 36 GTTTCAGACGAACCCTCGTGGGGTTGAAGC # Left flank : GACGAACCCTCGTGGGGTTGAAGCAGCAAGAAACGCGACCGCAGCTCTCGGTTCTGACTG # Right flank : CCATCGCACATGACGAATCTACCTGCGTAATTCGTGATGGCATGGTACGGACCGCAAAAACATGTTCGGGAGTACATATATCATCACACCGAGCGACGTTCCCGACATGGCCCTCGAATTCCCGTGGTGGCTCCGACTAGCCCACGTCTTCAATCTCCTCTTCATGCTGCTCTTGATCCGGAGCGGGGTCGGGATCATCGGCGCGCATCCGCGATTCTACTGGAGCGACGACGCGATTCCCGGGACAGAATGGCTTCGCACCGGCGATGAGGAACGACCAACCAACATCGATAAGGAACGAATCGGCGGTGGCGACGAACAACGACGACCGACCGCGACCGAACCCGTTTCCAAGGAGGCCACCGACGGCGGAGTCAACACGGAGGCGGCCGAGCTCCCGTCGCCAGAGCGCTCGTCGGGACGGACGTCCAAGCGAGTATCGAAGGAAAAAGAGGGAGTGTGGACGGCCGAAGACGAGGCCGATCCGTACTCCTCGTGGC # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTCGTGGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.10,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //