Array 1 353055-353679 **** Predicted by CRISPRDetect 2.4 *** >NZ_DS989819.1 Francisella tularensis subsp. novicida FTE isolate M3 FTE_scaffold2, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 353055 35 91.7 29 .....T.....-.C...................... TTCAAGGTTCAATGCAAGCAATCAAACAA AA,A,T [353058,353061,353065] 353123 36 100.0 32 .................................... GTCCATTTATTTCCGTCTCTCTTGCCTTTTGA 353191 36 100.0 29 .................................... AAAAAACTTTATATCATAAATGAAAGTTT 353256 36 100.0 29 .................................... TTGTTATCAGTAAGCGTATCTACTAGGTA 353321 36 100.0 29 .................................... CTCAACAAGATAGAATTACCTTTTAATCT 353386 36 100.0 26 .................................... AAAAAAATGACCTTCATAAATCGCTA 353448 36 100.0 27 .................................... CGGCTACTAATACAAAAGGCTCTAGAC 353511 36 100.0 30 .................................... TGAATTATCTGAAGGCACAGGAATAGTAGC 353577 36 100.0 31 .................................... TTTTAACAGTGGCCTTATTAAATGACTTCTC 353644 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================ ================== 10 36 99.2 29 ATCTACAACAGTAGAAATTATTTAAAGTTCTTAGAC # Left flank : CTAATATCTATTAGCTTAACCTTCTCTTTTTTTTGTAGATCAAGAAATTGCTTTACTGATATTTTTTCTACTTTATTCATCTTAGTCTCCTTATTTTAACTTTATCTAATTTAGATTTTACTAATATAAACTTTAAATTTTTTAATTTTTATCACCGCAATAGATGCTGTACAAAGCCTCCAATATTTTTGTTACCGAAGGATCGTTGATACTGTAATATACATTTTGCGCCTCTTTCCTACATTTGACCAGACCATTATTTCTCAACACTGATAAATGCTGAGAAAATGCCGATTGGCTCAAACTAGAGTACTCTGCTAGCTCTCCTACTGTCATCTCTCTTCGGAGTAGCAAGCATAATATCAATAATCTCGACTCATGGGATATTGCTTTTAATAATGAAGAAGCTTTACTAGCATTATCTTTCATCTGCATTAAATCCATTTTTATAAGCCTATAAATTCTCAAGTAGTGATATATTAGAAAATTCTAATTTAGAA # Right flank : CCCGTTTTTGCCTAAATCAGCAAAAAAAGACCTAAAATCTATGATTTTTTTAGCATTTTGATATATAACAACAGTCATATTTTTAAATATCTCTAAGAACTTAGTAGTTATTTTAACATAAAGACTAAGGTTTGCAATTTTTAGTCTATAAAAACAACCTCTTGTTCTCTATGAATCGCATAACCATATTTTATCACATCTTTATCTGGAGCATTAAAGATTAAAACACTATCAGCATTTGTAAATAGTGGTACATAGTTATTTTCTATCTCAGCTAAAATCAAGTCTAACATTCTCTTGCTATATTTGAGCTCAAATACCGAATATTGTAAACGTACACCATAACTTTCTAGAAATTTGGCAAACTTTGCACGTACTTTATTATTACTAAAATCATAACTGACTATCAACATACACCCTCCTAGTTTCATAACAAAATATTGGATACTCTGCAATTTCTTTGCCTCGCATAAAGGCACGATAAAATTCTCTTACATATT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTACAACAGTAGAAATTATTTAAAGTTCTTAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 554198-552945 **** Predicted by CRISPRDetect 2.4 *** >NZ_DS989818.1 Francisella tularensis subsp. novicida FTE isolate M3 FTE_scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================================================================================================================================================= ================== 554197 36 73.0 34 T...T...AA..AG.C.....AA.......-...... AATTATCAAAGCAAATGAAAAAGATTAGCTGTAA A [554188] 554126 37 83.8 169 ..........T.AG...........T...TG...... TTTAAAGTAGCTAGAAAATTCACTTTTAGACCTACTTATTTTTATTATTTGAATGCTTTGGTAGTATGTTGAGATCAACATTTTGCTGTAAAACTGTTTTCGTGATTATATTATTTGATACAATGTGTCCAACTAGAAACTTTTAGGAATAATTTACAAAATTAATTAA TG [554099] 553918 37 100.0 34 ..................................... ACAATGGCAAGCTTGATTACTTTTATAGTGTGAT 553847 37 100.0 36 ..................................... AAGGATTTAATACCTTAAAATTATCCAAATTTATAT 553774 37 100.0 36 ..................................... TGCCTAATCCTCAGCAGCAACACTTAATTCAAGAAT 553701 37 100.0 34 ..................................... TTACACATTCAGCTGGTTCTTTAGCATTATTAAC 553630 37 100.0 36 ..................................... AGTAATAGCCAATGCTTTTAAACTACTGATATATAC 553557 37 100.0 36 ..................................... GCAATGACAGAAAACAGCACAGATAATAAAAAACTA 553484 37 100.0 37 ..................................... CTATAGGGTTACCTATCTTTTGAGTGTTGGCAAATAA 553410 37 100.0 34 ..................................... GTAATGGGCAGGTTTTGTATGGTCATATAGGAGT 553339 37 100.0 34 ..................................... ACTATTTAAGATAACTCGACCAATATTTGACAAA 553268 37 100.0 36 ..................................... ATCTGGTGAAGATGTAATCGAAATTGATCCGCTTAA 553195 37 100.0 34 ..................................... CAGTCTTCGCAATGACACAACCACAAGCCGCATA 553124 37 100.0 35 ..................................... AAGAGATATCTTAACTTTTGGTTTTTGGTTTTACC 553052 37 100.0 34 ..................................... GCGAGTGATTAGCAGTTGATATATACCAATCTTG 552981 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================================================================================================================================================= ================== 16 37 97.3 44 GTTTCAGTTGCTGAATTATTTGGTAAACTACTGTTAG # Left flank : AACGACAATGAACACATTTGAGATTACAACGTCTAGTTGTTTCCCATGCCATCCATTTAAGTTGATGTTTCACTAAATTCTTAATCCAAAACGAAATATAATTTTGCTATAACTATTATAACAAATAATCATTAAACTAACTGTATAAAACTAATAAAAATAACTTTAAAAAAGATATTTTAAAGACCCTTTTAGCTTGGTTAGTTTGAGATTTTTATTTATACTTTATAAATACTGATAATCTCAATATTAGTTATGTTTACATTTTTGTTGTTAGCTATCGCGTTTATAGCAACCCTATATGCTTTATACTACTTTATTTTAGCTATTGTTAAGCTAATTGTAGCGATATATCATTTTAACTATTTTTTTTCTAAAAATGATTCAAAAAATTAATTAATTCATAAAATAAATTGCTTAAAGTCTATCAAAACTTTGTTTGTCTATTTCTGAAAGTAGTATTTAGATAAAATCTTATGAAAAATTATTTTTAAATGAGT # Right flank : AGCCAAAACAAACCTAGTGTTTGCAAGGCTTTGAGAGTTTTTTAAAATGGTATTTTTTCGCAAATACCCTAATTGTAAAAAAACGTAGACATTTTGCGAAAAAATATCTAAAATTATAAATGTACCAAATAATTAATGCTCTGTAATCATTTAAAAGTATTTTGAACGGACCTCTGTTTGACACGTCTGAATAACTAAAAAGCAAAAATTTGCCACCTAAGTGGCTTTTTTTGTTTGGCAATTAATATATCTTGTTCGCTTCTTAGCTCGATTACATCAAGATGGCTGAGAAATTTAATATGGAGATTTCTAAATATTTGCGAGATTTCCACCTTCAGTGGCAATTAGAGGTTTTACTATCAACGATCATTACAAAAGTTGTAATATTCACATTGTATACATTGATGATCCGATGCAGATGAGTCTGGCTTATTACCACTATCTAAAGTACTAAGAATATCGCTGATAGTTTTTATAAGTTTGTTGATTAACTCATCAGT # Questionable array : NO Score: 5.26 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:-0.85, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTTGCTGAATTATTTGGTAAACTACTGTTAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: R [matched GTTTCAGTTGCTGAATTATTTGGTAAACTACTGTTAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-19] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //