Array 1 4637-4220 **** Predicted by CRISPRDetect 2.4 *** >NZ_SDLE01000051.1 Geobacillus sp. NFOSA3 NODE_51_length_17250_cov_78.2013, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================================================================== ================== 4636 30 100.0 35 .............................. CAATACACCAGAAGGATATCGCCTAGTCGATCAAT 4571 30 100.0 36 .............................. AGATGACACAGGCAGAGCTATATCAAGCGCTGAAAA 4505 30 96.7 39 .............................T ATGATCGCTTCGTATAACTCATTTGCTAACTTCAAATAG 4436 30 93.3 38 .................A...........T CGCGGTATACAACGCCAAAATCTTTCTCATTCATCCCT 4368 29 90.0 90 ....................A...-....A CCAAGCTAAAAGAGGTTCTATTATTGTTTTTATCGTAATTATGAAATTGAACCAGCGTTCCAACGTGATATAATGAATTGGTAACTATTT 4249 30 73.3 0 .........GC.....C...T.....CGTA | ========== ====== ====== ====== ============================== ========================================================================================== ================== 6 30 92.2 48 GTTTTTATCTTACCTATGAGGAATTGAAAC # Left flank : GAGAGTTAGGAACCATATTATTATTGTTATGTGGATATGTTTATATTTGGAATTTAAGTAAAATAAAGACAGAAAGAAAGCTCACTAAATTTGAGTTTATCATGTACATTATCACTACAATTGGCACGTTATTATACGCAATTCCCTCAATTCTCATCATAATATCAAAATAGACTTTGTCCTTAGTATAAAAACTCTGATCACACAATGTGGTGGTCAGAGTTTTCTATTAACAAAGCAAGTTGCCTTTAGGGCAACCTTTTAGCCTTAAAAAGCCATAAATGCCCTATAGAGACGCTTTTTCTCTTCCGAATATAAAACCATTACCTTGAGGTTTAAAACGCGTTATACGCCAATCTGAGAAGTCGTTTTTTTAAGGTATTAACCAACAACAAACAATAACAGAGTCTTATTTTATTGCCTCCTTCCCAAGTATGATCCTTCCTTTGCCTCACCCCATTATAATTTTTGTTTGTGAGGTGCGTAAAGGGTCTGCGCTC # Right flank : GTGTTCCGGCAGCTTTCCCTGCACCATGTCAATATCACGTTCTAACCGATAGGCGCATTCTCGTTTCTCTCTAGCATAATGCTAGTGGAGAAACGAGTTTTTTTATTGCACTTTTATTTTGTGCATGTTCTAATAGTGATTGATGGGAATTAGGAAGAGATTGATTTCATTGGCAGAGGATATATTCGAAGCAAGGAGTGGGGGCTGATGGAGAAAGAGGCGATCATCCGCTTTGAGCGGGTGACGAAGGAATACGATGGGTTAGTCGTGCTCGATGATGTCAGTTTTGAGATTGAGCGCGGGAAGTTTTATACCTTACTCGGGCCGTCGGGATGCGGGAAGACGACGATTCTGCGTTTGATCGCGGGGTTTACGGAGCCGACGGAAGGAACGATTTATTTTCACGGAAAGCCGGTAAATCATGTACCTGCGAATAAGCGGCAAGTGAATACGGTGTTTCAGGATTATGCTTTGTTTCCGCATTTGAACGTGTTTGAAAA # Questionable array : NO Score: 7.51 # Score Detail : 1:0, 2:3, 3:3, 4:0.61, 5:0, 6:0.25, 7:-1.04, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.41%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.41 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 6523-6026 **** Predicted by CRISPRDetect 2.4 *** >NZ_SDLE01000051.1 Geobacillus sp. NFOSA3 NODE_51_length_17250_cov_78.2013, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 6522 30 100.0 37 .............................. AACAAGCGAGTCAAAAGACGAATTCCGGCACGCCCTT 6455 30 100.0 35 .............................. TCATCATAAATCAAAGAAGGATTACGAACAGAACG 6390 30 100.0 39 .............................. TCGAGGATGATGGCGTTTTTGTTATGGATTCGGAAGGAG 6321 30 100.0 37 .............................. ATATTGAAATCATTACCGTAGTGACTGCAAAGGGCGA 6254 30 100.0 36 .............................. CTTCCGAGAAGGTGCAAGTGATTGGGCAGGAAAAGC 6188 30 100.0 38 .............................. AGCTACACCTGCTAATGCTTTCCGCTTATTCATTTGAT 6120 30 100.0 35 .............................. TTCTCTGGTAAATCGAAGTGATGCGGCATCAATGC 6055 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 8 30 100.0 37 GTTTTTATCTTACCTATGAGGAATTGAAAC # Left flank : ATCATCATCGCATTTTCGAACGGATACACTATCCCCCACTTTTCTGAGTCATCTTATTATCAACTTCCGCCGCTCATTCGCGATGATGATCCATTGATGAATGAGCTGTTTCAAGCAGCCATCGAGTCAACGGAGGAAGCCATCTTAAATTCGTTGACAATGGCAGAGACGACAACCGGACGGAACGGGCGAATTGGCGAGGCTATTCCGTATGACCTTTTTCAATGACAACAAAGGGTATGTCTAGACGAATCGGCAACATCGGCATGTTGGCCGGTGAACAAATCGAAATTAGTCTTTATTAGTTTAGTTAATCACCACGTCTGTTTTTGTTGCCGTCGACCTCCAATCGTGCAAAAAGTGCGGGGGATCGACGACACTTCTTTTTTTCTTTTCTTCCCTACAGCCATCAGCATTCCTATGTATTGACGGAATTTTCAAAATGACGTATACTGGACGTAGTCAAATTGAAAAACGTTGATGCATCAACGTTTTTTGGG # Right flank : ATCGCTGGAACTCCGTATTGGTCAAAATACACCGTTGAAAGCTTTGCCAAGCATTTATTGGAGCAACAGCTTCTCGAGTAATCCTGTCTCATGACAGGAAATTGACCGAGCTAACCCTCCTGTTCCGGGAGTTTGTATTTTCTGTCAGCAGCAGCAACAACCAACCAAACGAAAAAAGAAATCAAAGCAACGATACAAAGGCATGGAACTTGAAATGTAAAACCAAAAGTAGTTTCTTTTTTCACAAATTAGAATTTTTTTAATTTTTGTTTGATATGAAAAATTTAGTTTGCTAGACTCATAATTGTAGAAAAACTCTATAATTATGGGAGGGGAATAATTTTATGAAAAAAAGAATGTTCTTTTTCATTTAGTTCAAATGTAAAAGCTGCTGAACGGAAAGTAAGTAATAACCCTTCACAAGAACAAATTTTAGAGATGGCAGCAGAATTAGAATACATTTTTACAGAGATCATCATAGAAAATGATAAAACAGGTAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 41809-40581 **** Predicted by CRISPRDetect 2.4 *** >NZ_SDLE01000010.1 Geobacillus sp. NFOSA3 NODE_10_length_88736_cov_64.6786, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =========================================================================== ================== 41808 28 100.0 38 ............................ GCTGATTGAGAAAAAACCGGCCGCGATTTTGATACAGA 41742 28 100.0 38 ............................ GTGGAGTGAGCGGCATTGGTTGAAGCGAGTGTTCTTCG 41676 28 100.0 37 ............................ GTGTGAAGCCGGAGCCGGAGTCGTTACAAATCGAAGT 41611 28 100.0 38 ............................ GGAAAACGAAAGCATGAATTTTATTGGACTTAACGGTT 41545 28 100.0 37 ............................ GTTTTAGTAGATATCTCATCTAGCTTCTGCAATATCT 41480 28 100.0 36 ............................ GCCGACTTTAAAACATCAGATAGTTCATGATACGGC 41416 28 100.0 36 ............................ TCGCTTCGCGTTAATGTCCCACAGGTTGATCGCACG 41352 28 100.0 35 ............................ TAGGAGGAATGATTATGTTTGGAAAGCTAAAAGAG 41289 28 96.4 36 .................A.......... TTTTTCCGATACCGCTTTTGTTTGACGTGTGATCGT 41225 28 100.0 40 ............................ TTTGCGTAACGCATGGCATCCATCAAATGGTTAAACTCAT 41157 28 100.0 35 ............................ TATGTTTGGTTGCTTGATTCGATGTAATATCCTTT 41094 28 100.0 35 ............................ TATGTTTGGTTGCTTGATTCGATGTAATATCCTTT 41031 28 100.0 40 ............................ TATAACCAAAACGTTCTAAACGGAAAAGGTAACAGCGTAC 40963 28 100.0 39 ............................ TTTTGTACTTTCAATCAAGGACTCTTATCGACAAGCCGT 40896 28 100.0 37 ............................ TCTGATTTAGACGCGGCCTTTGCTTCAACCACCCATC 40831 28 100.0 35 ............................ GCTGGAGAAAATATTGCAAAAGGCCAACGGACTCC 40768 28 100.0 29 ............................ GCATATACGAGAAAGAACAAGCCAAACAG Deletion [40712] 40711 28 85.7 75 .......T................GGG. TATAAAGATAAAATAGACATTTGTGGTGTATTTTTTTATTCGCTTTATTTGAACATAGTTTTTTGTCTTTTTAGA 40608 27 85.7 0 ..A....T.........-....A..... | G [40585] ========== ====== ====== ====== ============================ =========================================================================== ================== 19 28 98.3 39 GTTTTATCTGAACGTAGTGGGATATAAA # Left flank : AAGCGTGGTGGTAGAAATGTATGTCATTATTACATATGATGTAGGCGAAAAACGTGTGAATAAAGTGTGTAAGAAGTTAAAGGAATATTTAACGTGGACACAGAATAGTGTGTTTGAAGGCGAGATTTCGAAAAGCTTATTAATGAAATGTATGTATGAGCTAGAATTAATCATAAATAAAGAAGAAGATTCGATTTATCTTTATCAAGTGCCTAACCCCAAAAATATAAAGAAGCAGGTTTTTGGACAGGAACGGAATTTTGATGAACTATTCATTTAATAGCAAAGCCTGAAAGTGTAGAGTAGCTCTCAGGATGCAGTAAACCTCCGTTTTGATCTAATACTGGAAAATGCTTGATATATCAACAGAAATCACTTATTTTTTTTACTAGATCAAAAACACAACTGCCGCTTTACTGCAAAACCTAATGTACTGGTGTGATCAATGTTTGAAGAAAAACATTGATACATCAATATTTTGTCGTTGTTTGAAAATAGGG # Right flank : AATGAAATACATGCCATAACACGAATTGGTCATTTGTGATTTATCCAACATGAAGTAGAACTTTACTATTATTCAAAATAGAAAAAATATGTTATATGAAAGGACGAAAGATAAGCATTAATGATATAATTGGCAGAAGATGTATCATCTGTTTTTCACTAGTTATCTTACAAGACAGAAAGAATGAGTGGGGGTCAGCATGAGAATACGCGACTGGGATCGGAATTTAAAGATGCGCTTATTTGGCGAGGCGCTCGTCCATATCGCATTTTGGATGTTTTTTCCGTTTATGGCGATATATTTTACTGAGTCATTTGGAAAGGATAAAGCAGGACTATTATTGATTGTTTCGCAAATTTTTTCCGTGATCGCTAGTTTGATGGGCGGATATTGCGCGGATGTATTCGGACGCAAGCGGATGATGGTGTTGTCTGCCTATGGTCAAGGGGCAGCGTTTTTCTTTTTTGCGCTTGCTAGTTCTCCGTGGTTTACTTCGCCGT # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.15, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTGAACGTAGTGGGATATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //