Array 1 548024-549709 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016654.1 Neisseria meningitidis strain M22811 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 548024 36 94.4 30 ........G...A....................... GCGGAACGGGTTGACAGACTGAATTTGAGT 548090 36 97.2 30 ............A....................... ATCACTTTTAAAGGCGGCATCGGCTGGTTT 548156 36 100.0 30 .................................... AGGGGTCGTGAATGGAGTTCTTGCAGTTCG 548222 36 100.0 30 .................................... TAAGCGTTTCTTTTTTGGTCTGCTTCTGCT 548288 36 100.0 30 .................................... AATCAGACCGACTTTACAACGAAGGTTTGA 548354 36 100.0 30 .................................... CGACAACAAAGCCGTCTATGACCTGACCGA 548420 36 100.0 30 .................................... CACCCTGATATTCCGCAACTCGATATACTG 548486 36 100.0 30 .................................... TTGGGAGGTGGAAAACCGAATCCTGCACGA 548552 36 100.0 30 .................................... TGCTACCAGCGACAACAGGCATTACGCCCA 548618 36 100.0 30 .................................... TGAGAAAGATTTAAGAACTAAGTTCCCATC 548684 36 100.0 30 .................................... TCAGCCTCAAATACATCCGCCAAATCGTTG 548750 36 100.0 30 .................................... ACACAATCTCCGCCGTTCCAATCAAATGTG 548816 36 100.0 30 .................................... CTGATGAAGATACAACCGCACTAACTTTAC 548882 36 100.0 30 .................................... AATGATGTATATAAAATGCCGTAAAAAATG 548948 36 100.0 30 .................................... CGTCTGAAGGTTTGCCCATCTCCTGACAGG 549014 36 100.0 30 .................................... TCGATTGTCTATGAAAGCACTTGATGATTT 549080 36 100.0 30 .................................... CTCTTCATTGAAGAAGTTATAAGCCTTTGT 549146 36 100.0 30 .................................... TTTGGTAAAGGTTTCTGTTGCGACCCGAAT 549212 36 100.0 30 .................................... GCCTGCGTACTTGGTACGCTGGTCGCCTCC 549278 36 100.0 30 .................................... TTCATAGATCGATGCATGAGGTTTTCATGG 549344 36 100.0 30 .................................... AGGTCAAAGTGTCAGGCAAATTTAAAGGTG 549410 36 100.0 30 .................................... AAATCCATTTATCGCCCACCCTTTCCGGCC 549476 36 100.0 30 .................................... TGTAAATGAGGTTATTGAAGATGCAAAAAG 549542 36 100.0 30 .................................... TTTTCCAAAGCGTAAAATCACATTCGGGGC 549608 36 100.0 30 .................................... AACACTGATAGGGAATGTACCCTCGATAGT 549674 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 26 36 99.7 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : TACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : NA //