Array 1 1236876-1231964 **** Predicted by CRISPRDetect 2.4 *** >NC_010524.1 Leptothrix cholodnii SP-6, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 1236875 37 100.0 34 ..................................... TGCCGCCGGCTGGATTGAGCGGCGATCCAACGTC 1236804 37 100.0 35 ..................................... GGTTTGCATCAGCGGCACCCCAGGCGGGTAGCGAT 1236732 37 100.0 34 ..................................... TGCGCCTGGCCGCCTCAGGCGCCACTGTGACTGG 1236661 37 100.0 34 ..................................... CTCGCCCTTGGTGAAGGGCGGCAGGTCATGCAAG 1236590 37 100.0 34 ..................................... GACAAGTCGAGCGTGCTCTGCACGCGGCGCAGGG 1236519 37 100.0 35 ..................................... AGCCAGCCAGCGGCCACAGAGACCAACCCCAAGGA 1236447 37 100.0 34 ..................................... GCCAGCCCAGATTACGCCACCTGCCCACGCACCG 1236376 37 100.0 35 ..................................... ATGATCACCAACAGCGGCAGCGGCAAGAACAGCCC 1236304 37 100.0 35 ..................................... GCGGAAATGATCCTCGGCAGCATGCCGCCCAGCAC 1236232 37 100.0 35 ..................................... CAAGACCTCACCCCCACATAGGAGCCCCCATGGCC 1236160 37 100.0 34 ..................................... GCGGCCACCACGATACGTGATCGTGCCGCCGAAA 1236089 37 100.0 35 ..................................... GGCGCACTTCTCGCCCTCGACCACCACCACCGGCC 1236017 37 100.0 35 ..................................... ATGGTGCACAACAGCTGGACGCTGGCCTACGGCAA 1235945 37 100.0 35 ..................................... TCGCCCTTGGAGTTGATGCGCTCGAACCGCGCCAG 1235873 37 100.0 36 ..................................... ACCGGCAACAACTTCACGGATCAGAAGGGCGGCTGG 1235800 37 100.0 34 ..................................... AGATGCAGCTTGGCCTCGGCCAGCGTGATGCACG 1235729 37 100.0 34 ..................................... AAGCGCACCGGCCGCATCGCGTTCACCGGCCCCG 1235658 37 100.0 35 ..................................... ACCGTGCAGCCCGAGGTGGCGCAGCAGGTGATCGA 1235586 37 100.0 35 ..................................... CCTGTCATGGTAATCCCCTGCGCAAGCGCCCCTTT 1235514 37 100.0 35 ..................................... CGCGTCACCGCCGGCGCCAAGCCCTGCGGCCTGCT 1235442 37 100.0 35 ..................................... CGACGTTTTCGCGGCAGATCACGAATGGTCGGCTA 1235370 37 100.0 36 ..................................... CGTCTCCGCTCGGGCGCAAAACATCATGACTCGTGG 1235297 37 100.0 34 ..................................... CTGACGCCCTACGGCATCTACCCCCACAACGCCA 1235226 37 100.0 35 ..................................... CCGTCATGACCACCGCCGTTCTCGACGCCCCCGTC 1235154 37 100.0 35 ..................................... AACAAGCACCTCCGCATATTGGTGGAGATGGATGG 1235082 37 100.0 33 ..................................... CCTTTCAATCTTCAACCCGCCCAACTGAGCAGT 1235012 37 100.0 35 ..................................... TCGATCACGATCCCGCTGGCGGCCGGTGAAACGCT 1234940 37 100.0 34 ..................................... CGGCGGCGTTGCGCACGGGCGCCACCAGCACCGG 1234869 37 100.0 36 ..................................... ACCGACATCACCAAGCCGATCTCCGAAGCCGAGGAC 1234796 37 100.0 35 ..................................... TGCTGCTGCCGTCTCGGTTATCACGACAGCACTGC 1234724 37 100.0 34 ..................................... ACGCTGCCCGCGGTGCTGACCGGCCTGACAGCCG 1234653 37 100.0 34 ..................................... ATCTCGTTGATCTGCTCGATCGCCAGATCGCGGG 1234582 37 100.0 35 ..................................... CGACCATTGCGAGGATGTGCTCGCAATGGTCTTGG 1234510 37 100.0 35 ..................................... CGTGCCAAGGATGCCGCATACCTGCAGCTGCGCAT 1234438 37 100.0 36 ..................................... ACGGCACCACCGCCAACGCGGCGGGTGCTGTAGAAC 1234365 37 100.0 34 ..................................... CAGTTGTAGTGTCCTGCGGCACGCGCACATCATG 1234294 37 100.0 35 ..................................... GCGCATGTGATCGATGAGGCGGTGGCGATGGGCAA 1234222 37 100.0 34 ..................................... ATGCAGCCGAGGCGATCCGGGTTGGCAGTACAAG 1234151 37 100.0 34 ..................................... CAGTTATTGCCATCTGGACGACCGAAGCAAGAAC 1234080 37 100.0 35 ..................................... GATGCGCAGGTAGCCTGGGTGACCGGCTCGCTGTC 1234008 37 100.0 34 ..................................... GTATCGAGCCGGTTGATGCCGAGCTTGCTGGGCA 1233937 37 100.0 37 ..................................... CACGCCAACCACGGCAACCTGGCCGGCGCCGGTGCGG 1233863 37 100.0 34 ..................................... GCAATGGCGCAGGACACCCCGCGCCGCCCATCGC 1233792 37 100.0 34 ..................................... ATCGTCACGCATTCGGTACCGCCGGAAACCAGGA 1233721 37 100.0 34 ..................................... ATCGCTTGCGCAGCAACTGGGCACTGATGAGCTT 1233650 37 100.0 34 ..................................... TTGGCTGAGGGCGGCCGTATGAGGCTTCGTGCTG 1233579 37 100.0 35 ..................................... TTCCCGTTGTCGGTACTGTCATTGCTGGCGTTGAG 1233507 37 100.0 35 ..................................... ATCGCCAAGGAGATCGACATGACCGGCGCCAAGAA 1233435 37 100.0 36 ..................................... CTCTTGGGCATGGTCACGCCTATCGCTCGTCGTGTC 1233362 37 100.0 36 ..................................... ATCCGAATGTGCGTGCGCTCGTCGGTCGTCATGTCC 1233289 37 100.0 34 ..................................... CTGTGCTGCCTGCTCATCGGCCGCCTCGACTGGC 1233218 37 100.0 34 ..................................... AATGCTTCGCACCTCGTCCTGCGTCATCCAGGCG 1233147 37 100.0 33 ..................................... GCCAGCAAGCTGGTCGAGGAAGGCCTGCCGCTG 1233077 37 100.0 34 ..................................... CGACGCCGCCGATCGTGATCGTGATCTGCATGCC 1233006 37 100.0 35 ..................................... AGCGCGCGTACACGCGGTACATGTCGAGCAGGCCC 1232934 37 100.0 35 ..................................... ACGAAGTTGCTCGGTGGAGTAGCGCATCACGCGGC 1232862 37 100.0 35 ..................................... GACGTCTGCAGAAGATAGCGAATAGCGCGACTCAT 1232790 37 100.0 36 ..................................... AGCTCGGCCGAAGGCTCGCCCGACAAGCTGCAATCC 1232717 37 100.0 34 ..................................... ATTCGATCAGTCGATTGCGAATATCAAGGCGATC 1232646 37 100.0 35 ..................................... TGCAGGCTGATTCGGCCATTGCAGACGGCGTGAAG 1232574 37 100.0 34 ..................................... ACCACTCGATCATCGAGCGCCACAAGACGATCAA 1232503 37 100.0 35 ..................................... GTGCCGTAGCCGAGCGAGACGAGGCCCTTCAGGTC 1232431 37 100.0 36 ..................................... GAGGTACTCACTGGCTCCGGCTCCGGGCCACAGGCC 1232358 37 100.0 34 ..................................... AAGTTCAAGGAAAAGTTCGGCTACGAGCCGAAGG 1232287 37 100.0 34 ..................................... AGACTGGGCGCCTGGCTGTGGGAAGCCACGCACC 1232216 37 100.0 35 ..................................... TTGGCCAGGGTGAAGACCTCGTCGGTCTGCACGGC 1232144 37 100.0 35 ..................................... CACCGAGAGGTGCTCGGCGTCGACCTTGGCGCCGT 1232072 37 100.0 35 ..................................... CGATCGCGCACGCGGTGCACCGGCAGCCGGCCAGC 1232000 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 69 37 100.0 35 GTCGCTCGCCGGGAAACTGGCGGGCGTGGATTGAAAC # Left flank : ATGCGCTGAAGGGAGACGGCCATGCTCGTGATCGTCTGCTACGACGTCAACACCGAAGACCGCGCCGGCCGCCGTCGCCTGCGCCGCGTCGCGCGGGTGTGCGAAGGCACCGGCCAGCGGGTGCAGAAATCGGTCTTCGAATGCCAGGTGAACCTGGCCCAGATGGAAGACCTGGAGCGCCGCCTGCTCAACGAGATCGACCTCGACACCGACTGCCTGCGCCTGTACCGCATGGCCGACACCCGTGGCTGCGAGGTACGCGAACATGGCAAGTTCAAGGCCACCGATTTCGAGGATCCGCTGGTTCTATGATCGTCTTCGCGCGAACCCCGAGTGACCTCCCCGGCCACCTCAGGGTTCGCGCAAGCCGCAAGTCCCTGTCCCGCAAGGAAAAGCATGCAGCGGTCATCGCTGATGGCTCTGAATCGCAAGGAACCGCCGTCCAGGTTCGCGCGCAACGCGCAAGTTGGGCAAGGTTTTCAAGGACTTGGACACGCGGA # Right flank : TTTGCGATGTACTTCGCGACGTAGCCGGCTGCGCTGCTCAACCGCCCATGAGTCTGACTCAACTGCACCCACAACTGCCCCGCACACCGAACAATCTTCCCCAACCGCCCCCCCCCCCGCCCTGCCCCTGCCCCCCTCGACACTTCAGAATCAACCGCAGACGTCAGTCGAACAGGCCCTGCCGTTTGGGCAACTTCACGACGACGTGCATGCAACACGGGGTGCGCGCAGGCCAATGGACTTGGCCGGTCGGGCAAGCTGAGCGCCGGGTTTGACCAACATGACCTTCCGTTTGCCAAACAAGACCTGCGTGCGAGGGCACACCGGGGTCGATGTGCATACAACAAGACCCGCGGTGTGACCCCCATCGATGCTCCGTTTGCCAAACGGGAGGTCGAGTTCATCAAACCCGGGGTCGATGTGCAGTCACATCGTGCTGCGGTGTGCCTGCACACCGTGCTCGTGTTTGGCAACTCCGTGGTCCATGTGCCCTTGCACGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCGCCGGGAAACTGGCGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.60,-11.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [40.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : NA //