Array 1 221019-219361 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFGT01000012.1 Halomonas sp. BC2 scaffold00012, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 221018 33 100.0 34 ................................. AGTTGCCATGGCTTACAACACCTCTTCCAGGAAC 220951 33 100.0 35 ................................. ACCATGATTGACCACTGGTTGACCCACGCGAAAAA 220883 33 100.0 36 ................................. GTCAGCGGCTTCTGGCCATGTCAGCAATGCGCCGTG 220814 33 100.0 34 ................................. ACCAGCCCCCGGTAGCGCTGGCCACCGGCATACA 220747 33 100.0 35 ................................. AGACTGTAGCTAGATAGCGCTTTTTGATTAGGCGC 220679 33 100.0 35 ................................. AGGCGGGTGAAGCATTGCCACTTCGTGGCACCATC 220611 33 100.0 34 ................................. CTTCTCGGATCGGTGAACGTGTCGTTATCCCAGG 220544 33 100.0 35 ................................. ATATTCCCGACTGCGGGATCTATGTGGCTGGCCGC 220476 33 100.0 33 ................................. TTGAGGATCTCGCTCACCGCGTGCCAGCCGGTG 220410 33 100.0 34 ................................. ACTGGCAAAAGCAGGCGTTAACCGCATAGTACGC 220343 33 100.0 36 ................................. GTCCGATCTGTGGGGCGGCGCGATGGCTAGCGTCAC 220274 33 100.0 36 ................................. TGCCATGGTTGAATCTCTCTATCAGTGGTTAACCGC 220205 33 100.0 33 ................................. GTTGACGACGTAGCGGCCTACGCTGGCGTTGAC 220139 33 100.0 34 ................................. TTCGGCCTCGCTACTACCCGCTGCGTCACCACCG 220072 33 100.0 34 ................................. GCTGCCAAACAGTGCGATGGCGTCACCCGTCGAC 220005 33 100.0 36 ................................. CCGCGCATCCTGCGTTTCGTCCCGCGTAGCTCTGCG 219936 33 100.0 35 ................................. TTTTCGGTTGACCTAGTTGAGCAATGTTCAAGCTT 219868 33 100.0 33 ................................. AGGACATATTAGACGCTGTTAACGAAATGCAAG 219802 33 100.0 36 ................................. AGCGCATGATCCGCCGCTTTCGGCGTTTTGCAGTTG 219733 33 100.0 35 ................................. AGGTCGGCACCATTGGCACTGTGCATTCACGTTAC 219665 33 100.0 34 ................................. CTTACTTTAACTTTAGACGTTGGGCCAACGTCTA 219598 33 100.0 35 ................................. CGCTCAATCAACCTGAAACAGTGCGACGAATGCCT 219530 33 100.0 36 ................................. TCGCAGGCGCTCCAGGTCCACGCGGGGCATCGTCCA 219461 33 100.0 35 ................................. CTAGGAACGGGGACTCCTTGGTCTGCGGCGACTTC 219393 33 97.0 0 ................................A | ========== ====== ====== ====== ================================= ==================================== ================== 25 33 99.9 35 GTCGCGCCCCGCCCGGGGCGTGCGGATAGAAAC # Left flank : GCGTGCGGATAGAAACAAAAATACACCGTAGCCGTGCGCGGCGGGCAGTTC # Right flank : TACTACCAAGGCACGCGCTGCCGAGAACGACTCAAGTCGCACCCCGTCCAGAATGAATATCTACATAGGGAGAATAGATACTCGTGTTACTGGCATATCACCTGATCAATGGTGAAAATCTACTTTTTAAGTTTCAGATAAGGCCTTGATTAGCTCAGTGCCTTATGAAGCTAAAATCTATACCCATGCTCTTAAAGAAGAATCAAACACAGCCTTGCAACCTCCTCTTATTAGCCAAAAGTAGTGGAGTGCGCGACGATTCGCTTTACGAATCGCTAATAATGGTGACCTAACAGGAGAATCGCCGTGCAGGAAACAGCACAGCAGGGAAAGTTTGCGTGGTGGCGCGGTATCGCGCTGTGGAAGAAAATTCTGGCGGGCCTGGCGCTGGGTATCTTGGCCGGGGCGTTGCTGGGCGAGACGGCCAGCATCTTCAAGCCGCTGGGTGATATTTTCATTAACGCGATCATGATGCTGATCGTGCCGCTGGTCTTTTCGAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCGCCCGGGGCGTGCGGATAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCGCTCGGGGCGTGCGGATAGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.30,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1411-22 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFGT01000020.1 Halomonas sp. BC2 scaffold00020, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 1410 33 100.0 36 ................................. ACCCAGCCGCGTGTTCGAAGGCTACGGCATCAACAT 1341 33 100.0 34 ................................. TCGTCGTGGCTGTACAGCCCCGCCGTGGGCTGTC 1274 33 100.0 35 ................................. GCCAAGGCCTACAACGACGACCGTCTGCTGGAGAT 1206 33 100.0 34 ................................. AATGCCAAGCAGTAGCTCACGGGCGTAGTGCAGC 1139 33 100.0 35 ................................. ATTCAATTGATCGCATCAGTACCAACGGCAATTAC 1071 33 100.0 35 ................................. TGCACCGTCTTGCCGCTGTAATGCACCCGTTTGAC 1003 33 100.0 37 ................................. ACGGAGAGTCGAAGCGCTTTCGCGTCGGCGCCATCAA 933 33 100.0 34 ................................. GTCAGCACTACCAGCAGCGGCGCAAAGACGTGAA 866 33 100.0 34 ................................. AAGAGGTGTTCGTCACTGACAGCGGCGATGAGAT 799 33 100.0 34 ................................. ACCGGCGGGCAACAGAACCTCGATATGCTCCGCG 732 33 100.0 37 ................................. CAGAGCTGTGGGCAAAGGCTCTTTCCAAAGGCGTCAT 662 33 100.0 34 ................................. TGGCCGCTAATCGAGCGCTGAACCGTGTTCGCGC 595 33 100.0 35 ................................. TCTGCCTGCTCCATGCGAAGAGCAGTGACAGGGTC 527 33 100.0 34 ................................. ACCACCGGATGGCCTAACGGCGCGGGCAGGCCTT 460 33 100.0 35 ................................. CGTTATCATCGACCAGCACGCTAACCTGCGAGCAA 392 33 100.0 35 ................................. CATGCGCTGCTTCAGGCTGCCCAGCATTGGCGTAC 324 33 100.0 35 ................................. GGCGTCAGTGGGCAGCAGGTCGCAGCTAATAGCAT 256 33 100.0 33 ................................. AATCATCAACAAACCGACTAACCATGGACGCCC 190 33 100.0 35 ................................. GTAAGCTGTTCAAGCGCCTTGGCGTCTGGCAAAAA 122 33 100.0 35 ................................. ATCGCCCGGCACGGGCGGAATGATGCGATATCCCA 54 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ===================================== ================== 21 33 100.0 35 GTCGCGCCCCGCCCGGGGCGTGCGGATAGAAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : CCGGTATCTAGGGCGGCAATCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCGCCCGGGGCGTGCGGATAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCGCTCGGGGCGTGCGGATAGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.30,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [15.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.24 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 2867-2700 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFGT01000020.1 Halomonas sp. BC2 scaffold00020, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 2866 33 100.0 33 ................................. ACGCGCCTGGCCAGAGAGGGTGCGAGCCCTGGG 2800 33 100.0 35 ................................. ACCTCAGAGGAGCGCGAAAGCATAGAGAGAATTGC 2732 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =================================== ================== 3 33 100.0 34 GTCGCGCCCCGCCCGGGGCGTGCGGATAGAAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTACGATGTCAGCACCTCTTCAGACGGCGGTGAAGGCAGGCTGCGGCGAGTGGCAAAAGCGTGTCGAGATGTAGGGCAGCGAGTACAGTTTTCCGTGTTTGAAATTGAAGTCGACCCCGACCAATGGGTACGCTTTCGTCAACGCTTGATCGACTTGATTGATGACGAGGTAGACAGCTTACGCTTCTACTTCTTAGGCCGAAATTGGAAAAACCGCATCGAACATATTGGCGCCAAGCCTGCCTTAGACATGAATGGCCCTTTAGTTTTCTAATGTTTCTCTTGTTTGCGAACCCCAATTGTCTTGCCAAACCCCGTCAGGTTCGCAGCTCTTTAATAAATTGATTTTAATAACAAAATTTTCGCTCACTCTTTTGCATCAAGCAAAAATCGGCTAATGCTCAGTGTTTCGCAGAAGCATGTCTTTTTGCTTTTATTTTTCATGATGTTATAAACAGAACA # Right flank : TTTGGCAGACTCCACCCCCTGGGCTGGATTGCTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCGCCCGGGGCGTGCGGATAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCGCTCGGGGCGTGCGGATAGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.30,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [25.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 97953-95539 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFGT01000023.1 Halomonas sp. BC2 scaffold00023, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 97952 29 100.0 32 ............................. ATTGGGCGCGACATAGCATGCGCCCAGCAAAG 97891 29 100.0 32 ............................. CCATTATGGAATTACGCCGCCAACTGCACGGC 97830 29 100.0 32 ............................. CTCCTCGATCAACGATTGCCTGGGTGGCTAGA 97769 29 100.0 32 ............................. CTCAAGGAACCAGAGGGACGCGTGCGGTGGAT 97708 29 100.0 32 ............................. CCGAACGGGTCAAAGGGTTGGCCCACGGCATC 97647 29 100.0 32 ............................. ACAGGCAGGTCTAGCAACCTAAGTTATCCGCT 97586 29 100.0 32 ............................. CCTACCGCAAAGAGCAGGAAGTCATCGCCCGC 97525 29 100.0 32 ............................. GCAGCCCTGGTATTGGCAAATCGGCCATCATC 97464 29 100.0 33 ............................. ATTTCCCTTATAGCATCTTCTGGCCCCATTACC 97402 29 100.0 32 ............................. CGCAAGCCACGCTCAGCCACCCCGAATACCTC 97341 29 100.0 32 ............................. GCGAGCCTGGGCGAGTTGGAGCAAGAATACGC 97280 29 100.0 32 ............................. CCCCGCCAGAGCTCGACGACGAAGACGAGCTC 97219 29 100.0 32 ............................. TGCTCGAGGACGTGACCAGCAATGCCCAGGGT 97158 29 100.0 32 ............................. CCTTCTATCACGTCGAAAGCGAGCTCCTATTC 97097 29 100.0 32 ............................. GCGCGCACGCCTGGTGCTTCAACGATCTGCCG 97036 29 100.0 32 ............................. CCCACAATGAAAACTGAGTTCATGCTGCTGGC 96975 29 100.0 32 ............................. TTTGGGATATGCCAACTTTTGTATGCCGTCAA 96914 29 100.0 32 ............................. TTTTCCCATTCCACAGTAGTGGCGGTGGTTAG 96853 29 100.0 32 ............................. GTATAGCTGGAAATACGTGCGGGCCTGCCGAG 96792 29 100.0 32 ............................. CTATCAACAAACAGCAGCCTATTCACACCAGC 96731 29 100.0 32 ............................. GGCATACGCGCTACAGGTAGGCATATCGGCGG 96670 29 100.0 32 ............................. TCCAGCTCAGCGGCGTAGGTCATGCGCACCGT 96609 29 100.0 32 ............................. GCGTTGGGGTCGATGTCTGGCCAGAATCCGTT 96548 29 100.0 32 ............................. CATGTCCAGTAGCTGCTCGGCTTTGAGCGGTT 96487 29 100.0 32 ............................. GTTTTGTCGTGGACGTTGTTGTCATGGCCACG 96426 29 100.0 32 ............................. CCTTCGGCATTAGCATGGCTGGCATGGGCCAG 96365 29 100.0 32 ............................. AGGGTGGCGACGTATGACGTTTGATGACTGGA 96304 29 100.0 32 ............................. GCGAGAATTATTGGAGAGTTTCACTAAATGGT 96243 29 100.0 32 ............................. GCTCTGGAAACCAGCTACGAGCCCATCTATCC 96182 29 96.6 32 ............................T AAAACCAACCGCGCCGCCTGGAACCTTGCGGC 96121 29 100.0 32 ............................. AGCATCATTGATGGAATGCTAGCCGCCGCACC 96060 29 100.0 32 ............................. GCAGAAAATGAATAGGAGGTATTACTATATCT 95999 29 96.6 32 ...........................T. TCTGCACCATGAGCAGTATCAACCGCGCTAAA 95938 29 75.9 37 ......................ACGGTTT AGCGCGGTTGAGGGTTTCCACCGTAGTTTCGCCCGCC 95872 29 100.0 32 ............................. ACGCCATGACGAGCGCATGGGACGCCATCGGC 95811 29 100.0 32 ............................. CTCTTGCGCTTGGTAGGCTGCGCCACAAACCC 95750 29 100.0 32 ............................. AGAAGGCAACGCTGCTGCGCGCCGTGGTCACG 95689 29 96.6 32 .............A............... GCTTCCTGCGCGCGGCGTTCCGCGTTCACGCC 95628 29 100.0 32 ............................. CTGAAGCGCCGAGGGATCGATCTGAGGCACAT 95567 29 89.7 0 .........G......C...........T | ========== ====== ====== ====== ============================= ===================================== ================== 40 29 98.9 32 CCGTTCCCCACAGGCGTGGGGATGAACCG # Left flank : GACAGGTCTCCCAGGACAGCCGCAGCCGGGCGATTGCCCAGCGCCAGAAGGAGCCTTGGGTGCTGGTCAGTAACCTACCGGCGCGCTCAACGCTGGCGGACAAGTTGGTGGCCATTTACCGGCAGCGCATGCAGATTGAAGAGGGCTTCCGCGACGTCAAGAGTCCCCAGTTCGGGATGGGCTTCGGCATGCATCAGTCTCGCCAAGGCAAGCGGATCGAAATCCTGCTGCTGATCGCGATGCTGGCCAATGTCGTGGTGATGGTTGCCGGTCTTCAAGTCCGAGACAGCGGGCAACAGCGACGCTACCAGAGCAACACGATCCGTCATCGGAACGTTCTCTCCGTGTGGCGTTTGGGACTGGAGTGGCTGCGACGTCATTGTGTCGGTGCTGTCCCATGGCCCTCTTGGAAGACAGTTCTGACGAGCCTCCAAGGGGAAGTCAAAGAGCAGGCCTTATGCGATGGATAGCAAAGTTCGTGGGGATTCCTCAGGCGTTAA # Right flank : GGTACTCGGTTGAGCGCTACTATGGTGGGCTTGATGCAGCGCTACTTTCTGCGGGCGCTGACACTATTTTCTATTTCTGGAAAATTCCGCCAGCGCCTAAACGATGCGTTTACGCTCGTGCCTGCCATCGAAGAAGTGATGCGCACCGTCGGGAATATGGCGACAGAGATGGTGAAAGAGGCGCATGTGGTGGTGGCGGAGTAAGTGATGCTCCTTTCAAGTATCCGCAAAGGCCGCCAGTAATGAAGCGGTCAGTATTGGCGATGGATTAGCTCCGGTCAGAATCGTGGCGATATGAGCCCCCTGAGGCCACTGGTCACGCATGGCATAGGCGGCTGCCAAGCCGAGTGCCCCTGCGGGTTCCAACAGCAGCCCCAGATGTTCCAGGCCAAGGCGCATGCCCTCTTCGATACGGGCTTCGTCCACGAGCCAAATGTCATCGACTACATCACGCATATCCTCCAGTGCCTCGGTAATAGGAGCGCGAACCGCCACGCCAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTTCCCCACAGGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCGTTCCCCACGGGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 102014-100460 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFGT01000023.1 Halomonas sp. BC2 scaffold00023, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 102013 29 100.0 32 ............................. CCCGCTTGCAGGCGGTGGCGGGGGAAGAGGTC 101952 29 100.0 32 ............................. CGCTCTCGGCTGGCCTGGTGATCAGTGGCGCC 101891 29 100.0 32 ............................. GTCTTGAGCCCGCCCGCAGTCAGCGTGCCGTC 101830 29 100.0 32 ............................. CACGTGCTGCGGGTCATGGCCGAGATCGAGGG 101769 29 100.0 32 ............................. GGGATGCACGTGCTGGGCTTCACCACCTTGGA 101708 29 100.0 32 ............................. ATTCTTGAGCCCGGCACGTTTGAGCGCTTGGT 101647 29 100.0 32 ............................. TTCAGCGCGCCGAGGCCAGCATTGCTGCCGTT 101586 29 100.0 32 ............................. TTCAGCGCGCCGAGGCCAGCATTGCTGCCGTT 101525 29 100.0 32 ............................. CGTGATTGCTGCCCATGCCCAGCCGGGCGAAG 101464 29 100.0 32 ............................. TCATCCTGGCGAAGAGTGATCTATGTAGAAAA 101403 29 100.0 32 ............................. GCCTGGCTAGGGGGGAGAGAGTGAGCATCGCT 101342 29 100.0 32 ............................. GCGGACAGGTAGTCCCAGGCCGCTTCGCGCGC 101281 29 100.0 32 ............................. TAATGCTCAACAACGTGCCGACGGGCATCAAT 101220 29 100.0 32 ............................. CATTGCGAAACAGCGTCAATATCCCGCCAACA 101159 29 100.0 32 ............................. CGCGCTGGCATTCTCTGGCAGCAGGCTGTAGC 101098 29 100.0 32 ............................. CGTTGCGGTACCGGCAGCAGCGGCGATGGATG 101037 29 100.0 32 ............................. ACTCAGCAGGATTACGAATACTGCCGGGCCGC 100976 29 100.0 32 ............................. TTACTCATCATCGTCGCCTTCGTCGTCGCTCA 100915 29 100.0 32 ............................. GCACCGCCAGCAGCGCGGGGCCGATGGCGGGG 100854 29 100.0 32 ............................. TCCCGGGCCGACGTGTGGCGTGACTTCAACGC 100793 29 100.0 32 ............................. GCATCACGCAGCAGGGCATCTCGGCTGGGGTG 100732 29 100.0 32 ............................. GCGCTGCTGATCGACAGCGGCCGTGAGCTGGG 100671 29 100.0 32 ............................. GCGCGCCGTGAACTCAGGCGACAGCTGAGCCA 100610 29 96.6 32 ............................A CCAAGGGCGCCGACGGTGACGAGGTGGACGCC 100549 29 100.0 32 ............................. GCAGCTCGGAACAGGAGGTCGAGGGCTTGCCG 100488 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.9 32 CCGTTCCCCACAGGCGTGGGGATGAACCG # Left flank : GCGAGATCGAACCGCCACCACCGCCAGCCGACGCCGTACCGCCCGCCATCCCCGAACCGCCGTCGGTGGGCGATAGCGGCCATAGGAGTCAATGAGATGGCCATGCTCGTCGTTGTCACCGAAGCCGTGCCACCTCGATTACGCGGGCGGCTGGCCGTCTGGCTACTGGAGATTCGCGCTGGCGTGTATGTGGGCGATGTCAGTAAGCGGATTCGAGAAATGATCTGGGAACATGTCAACGTCCTGGCCGAGGATGGCAATGTCGTCATGGCCTGGGCCAGCAACCATGAGTCCGGCTTCGAGTTCCAGACCTATGGTGCTAATCGGCGTGAGCCCTGGGATCACGATGGGTTGCGTCTGGTACGCTTTCTGCCCGCCGAAGCTAAGTAGCTGATAATCCTAGATCTTTAAAAATGCAGTTTGTACAAAAAATAAGCAAAATCGTTGGTGGAATTTCTGCTGTCGATTTTTCTTTTTTAGATCAATTATCTACAGTTAGA # Right flank : CAGATCGCGCTCTTCCAGAACAGGCTGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTTCCCCACAGGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCGTTCCCCACGGGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 114591-112671 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFGT01000023.1 Halomonas sp. BC2 scaffold00023, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 114590 29 100.0 32 ............................. TGATTGAGCGCATTGCTGAGTGGGAGCGGATC 114529 29 100.0 32 ............................. GCTGGCCCCGGCCCTCCACTTGCCGGAAGAGG 114468 29 100.0 32 ............................. ATTGGGAGGTAAGCATGCGAATCACGTATGGG 114407 29 100.0 32 ............................. CTCCACGGCTTCTGCGTCAGTATAATCCGGGA 114346 29 100.0 32 ............................. TAGTCAAGCCCTTGCCCGCCTGTTTCATTGTG 114285 29 100.0 32 ............................. CCGCCGAGGAGGGTAAAGCACCGCCTGCCCCG 114224 29 100.0 32 ............................. GTTCCGCCCTTCCTCTATGAGCCGGTTTGCCG 114163 29 100.0 32 ............................. GTTCCGCCCTTCCTCTATGAGCCGGTTTGCCG 114102 29 100.0 32 ............................. GCCCTCGGTGGTAATTGACGGTGTCACCTGGG 114041 29 100.0 32 ............................. GCCCTCGGTGGTAATTGACGGTGTCACCTGGG 113980 29 100.0 32 ............................. CAACCTCCAGGACTTTGCGGCGCTGAGCGGAT 113919 29 100.0 32 ............................. TCGGCAGGCTCTCCCTGCGCGGCTGATATTGC 113858 29 100.0 32 ............................. ACTTTGCCCGCAGTGGTGACCTGTCAGTGATT 113797 29 100.0 32 ............................. CACACTCCAAAGTCTCAGAAAGCCATTTAGGC 113736 29 100.0 32 ............................. CGCGATTATCAGACCATTCAGACAGAGTGCGT 113675 29 100.0 32 ............................. GTGGATCAGGAGACAGACGATGACCTGGCACT 113614 29 100.0 32 ............................. CCGAGATCGAGAGTAAAAGGCGGCAGGCCGAG 113553 29 100.0 32 ............................. CTGCAAGAGAAAATATCGAAAGAACGCGGCAT 113492 29 100.0 32 ............................. GTCGTAGAAGTCCTCTTGTGTGTTGATGGCGT 113431 29 100.0 32 ............................. TTCGTGATCAATTCCGCCCAGCCCTTCATCGT 113370 29 100.0 32 ............................. GCGCAGGCCGCGGCGCCGATGAACCGCTCAGC 113309 29 100.0 32 ............................. ACGACGCTGATCTCCTGGCCTTACTGCGTGAA 113248 29 96.6 32 ............................C CGTTTTATCTACTCATCTGCCTTAGAGTGGCT 113187 29 96.6 32 ..............T.............. TCTAGGGTTCATACTGGTATTGTTGACGGCTT 113126 29 100.0 32 ............................. GGACGCCGCTAGAGTTTCGCTGCACCCTTATA 113065 29 100.0 32 ............................. TCGATCGCCATTCCGTTTGAGCTGCTGCAGGA 113004 29 100.0 32 ............................. GGATTGATTACACCGCCCTGTACGGCCACCCC 112943 29 100.0 32 ............................. AGTTTCCCGCCGCTGGCACGATTCTGCCGGGT 112882 29 100.0 32 ............................. ACGTGCAGGTGCGCGTGAAAACCAAAGCCACC 112821 29 100.0 32 ............................. ATGGAGGCGCTGCTTAGCGGCACCTCAGTGGT 112760 29 100.0 32 ............................. GACGTGGCGGAGGCGGTGATATGCGGCGTGTT 112699 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 32 29 99.7 32 CCGTTCCCCGCAGGCGCGGGGATGAACCG # Left flank : GGGTAGAGTTACCCGCCGCGGTGGATTGCGTGAAGCTCAATCAGCGTCTGGCGCAGCATGCCATCCACGTGGCGCCGGGCTCGCTGTTCTCCGCCTCCGGCAAGTTCCGCCAGTGCCTGCGGCTGAACTATGCGTTTACGCTCACCCCCGCCATCGAAGACGCGGTGCGAACGGTAGGAGAGCTTGCCACTGAGATGGTGGAGAAGGCGCAGGCGTCGCTCGTCTAAAAACGAAGGAATCGGTCAGTTAGCACATCCAATAGCGCCCTGCGCGAGTCGTCTCCCATGAGTGAATGCGAATGCCATAAGAGAGACCTCACTTCTTGAAAACGCTGCATACGTATACGATTGCGCGAGGCTTGGTGCGATTTTTATAGGTTTCTGCAACATACTGATTTTACTGTTCTTTAATAATATTGTTCTGGTCAAAAATCGATCTAAACCGCTGGTGAACTTTCTACTGAACATTTTTATCTTGCAGAACAGCCATCTACAATTAGT # Right flank : AGTTGAAGGGAGCGTTTTCTGGCTGAAGTGGTCCATTGTAAACATAGGAATACACTGTGGACGGCGATCAGGCTAGTGCCTCCAGGATCATCGACTGAATATTCATATCTAAGGCTGGTGTGGAGCTAGAAGTGCGTCTGGAGGTATGAATTCTTGCAAATTTATAACTCTGGGGTTATTTTTTAATTGACCAAAAGAACAAGGAGGAAGGGTGAAAAGCAAGGATGTCATCAAGGAGATGGAAGCTGATGGATGGTATCTAGATCGTGTTAGTGGGAGCCATCACGTATTCAAGCACCCTACCAAGCTCGGCAGTGTGCCCGTGCCTCATCCGAAAAAGGATTTGCCTAAGGGCACCATCCACAATATCAGAAAACTTGCGGGGCTCAGGTAGCTCGGCCGTTCAGGAGGTAACTCATGCAATATCCGGTTGCTATCGAATGGGGCGATGAACACACCGCCACCGGTATCGTCATTCCGGACATTCCCGGTGCTGTGAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTTCCCCGCAGGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCGTTCCCCGCAGGCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //