Array 1 51276-53132 **** Predicted by CRISPRDetect 2.4 *** >NZ_WQOL01000011.1 Faecalibacterium prausnitzii strain MCC588 NODE_12_length_61781_cov_72.841248, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ====================================================================================== ================== 51276 28 96.4 33 ............A............... TCTGATAGCGCATTTCTACGAGCGGCAGCGGAA 51337 28 100.0 33 ............................ CTATCAGCGGAGCAACCATGGGACTGGCAAGCA 51398 28 100.0 33 ............................ TTCCGGGGGTTGAAAAAACCCCTCGTCTGTGTT 51459 28 100.0 33 ............................ TGAGCAGCACGGCATATCAAAGAGCGGTTGAAG 51520 28 100.0 33 ............................ TACCGCCCGCCATGCCGAGTGTACGGTGGAGTT 51581 28 100.0 34 ............................ CAACATTGGGCGTGATCTATGGCGAGCGATTTGC 51643 28 100.0 33 ............................ TATGTACGAGATCTCCCCCTTCGGGGTCATCCA 51704 28 100.0 33 ............................ CCCGCCCCGTGGGAAGGAGAGTGAACAGCATGC 51765 28 100.0 33 ............................ CTTTAGACGGCGGGCCGTGTCCTTCAGGACACC 51826 28 100.0 33 ............................ TTCTCGCCCGGGAGTTGCTACTAATAGTATCAA 51887 28 100.0 33 ............................ TTTTCACGTCCTTTCGTTTATTTATCTGTTTCC 51948 28 100.0 33 ............................ CTGCCCGCTGCTGCTGCCAAGTATCTGGACAAG 52009 28 100.0 33 ............................ CAACTCCCGGGCGAGAATTGCCGGAAAAGCTAG 52070 28 100.0 33 ............................ CCGCCCGGCCCCCTGCTCCATCTGCTCATACAG 52131 28 100.0 34 ............................ GAGGGGGCAGAGCCAGACCCGGGGTAAAGGGGGG 52193 28 100.0 33 ............................ CCAGCGCCATGCGGCCCCGGTCTCTTGGATATG 52254 28 100.0 33 ............................ CTATATCGAGGCTCTGGGCTGGGAGGAAGCCAA 52315 28 100.0 33 ............................ CAATTTCAAATCATGGATTTGCGCCAACTACAA 52376 28 100.0 33 ............................ TATCACCGAAATCGCAACCGCCATTCTTCCCAG 52437 28 96.4 33 ............T............... CACGGCATACCAGAGAGCAGTTGCAGACATGAG 52498 28 100.0 33 ............................ CATCTCCGGCACAAGCGTTTCGGAAAACTTGTC 52559 28 96.4 33 ..............T............. CTCCACATTGTTGGTTCCTGCGATCATCTTTGC 52620 28 96.4 33 ..............T............. GAGGATCGGGTTTGCGTCCATGGCCACGTTCAG 52681 28 92.9 33 A.............T............. CTGGCCGATGTTCGGGGCAGAAATCTTGCCCAG 52742 28 89.3 33 .............GT......A...... TGACTTTTGAACTTTATGCAATCAAAGACGAAC 52803 28 100.0 33 ............................ TTTTCAGGCATCTCAAGAAAATCCTGCACATGG 52864 28 100.0 33 ............................ TCCATCTGCAGGCCCAGAGAGTAACCGGCGCTG 52925 28 96.4 33 ............T............... CTTTCGCGGCCAGATGCCCCGCTACTCTCTGCA 52986 28 100.0 86 ............................ AAATGTGCAGCACCCCTGCGGCTGCGAAGCAGTCCGCAGAGTAGTCTGCTTTGTTGTGATAGGTAACTTTTTGAAGTAATCTCCAA GG [53003] 53102 28 82.1 0 G........A..........C...CA.. | C,T,C [53106,53114,53119] ========== ====== ====== ====== ============================ ====================================================================================== ================== 30 28 98.2 35 CTTTTCCCCGCCCACGCGGGGGTGATCC # Left flank : GCCGCCTCAGATGCCATTGTGGAATACGGCGCTCTCCGTGTGCGGGATGGTCAGCCTGCCGAAGAATTTTCGGCCCTTGTCCGGGGCACGGAACCTCTGCCGGATGTGGTGGCAAAGCTCACCGGCATCACGCCGGAGGAGCGGAGCGGCGGTATGGAGCCGCTGGCCGCGCTGGAGGCGTTCCTCGCATTCGTGGGCAAAGATACGCTGGTGGGCTATCACCTGAAATTTGACCTCGATTTCTTGCGTGCGGCCTGCATCCAGAATGACAGACCCCTGCTTACCAATCGCAGCATCGATGTTTTGCCCCTTGCCCGCCGTAAGGTGTCGGGGGTGATGAACTATAAGCTGCTCACGCTGGCCCGGCATTTTGAGGTTGCCCAGCAAGAGACCCATCGCGCCCTGCCCGACTGCCGCCTGATCCAGCAGGTCTATGCAAAACTGAATGAAACGGGATCGGCCCGCTGATAAAAATGCCGCTTCTATGGGATCTTTTTAGT # Right flank : CTTTCAGCGCACCCGGCGTACCATCAAATCGATTTACTTTCTTCCTTCAGATTTCAACACTGCTGTGTTCTCACGGACACAGAGTGGTTGTAAATTTCACAGTTTAAGTTTTTCGCGGTATTTCATGATTTTGCCTACCGTCTTTGCATCAAGCTCAGGCGGTATTGGACTGTTGTGAACCATGCGGTGGCATGGTTCACACAGCCAAACCAGATTCGGTACTTTATTGATTCTATCAAGTGGAAGCTTGTTTTTAACGTGGTGACAATGCTTTTGAAGCATGGGTGAGAAGGCATTTCCACAGCATTTACATTTTCCTTTGTCCCTGCTGTAAGCATACTCCCGGTTCATATAATACTCAAAATTCATCCTTCCCTTTGCGTATGCTGACATTGCAATATCGTTCGGGGAATTAACGGATGGACGGTCACATGGCAGTGACTTGTGCTTAGCACGATAGTTCACATACCGTCTGCGCCCTTCCACTGTATACGGTGTCA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCGCCCACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCACACGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-13.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 55895-56328 **** Predicted by CRISPRDetect 2.4 *** >NZ_WQOL01000011.1 Faecalibacterium prausnitzii strain MCC588 NODE_12_length_61781_cov_72.841248, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 55895 28 96.4 33 ..............T............. CTGCGGGAAATAGTAGTCCAGCCTGTCGCTTCG 55956 28 96.4 33 ............T............... GGTCAGCAGTGCGCAATTCGAGCACGTCCGACA 56017 28 89.3 10 ............T.........C.T... TTGGGACGGT TG [56043] Deletion [56055] 56057 28 100.0 33 ............................ CAGCAGAACGCCCTATCTGGTCGAAATCATGGA 56118 28 92.9 33 ...........TT............... CCTGACCAACAAGATTGCCTGGGCTGGCGATGA 56179 28 100.0 33 ............................ TCCCACACCCACCCGCACACCGGTGGTGAATCA 56240 28 96.4 33 ..............T............. CTGCACATACTCCGGCTGGCCGCTGTCGCCGGT 56301 28 71.4 0 T..........ATGT........TC.A. | ========== ====== ====== ====== ============================ ================================= ================== 8 28 92.8 30 CTTTTCCCCGCCCACGCGGGGGTGATCC # Left flank : TTTGAACCACAGTTGCTGCATGATTCCTGATGGGGATTTCATCCCACAGGGCGTGTGCAGAAAAACCAGCCACACACACTTTTTCCAAGGGTCACCCTTTCGGATGTCGTTCGCTCTTACGATGCTGCATAGCTTTCCCTAACGGATAGCCATAGGTTTCGGAAGCCCGCACCATTATTATCCATGCCTCTTTGCAGAGGTTTAGGTTTTCAGGTTACGCCTTCACCACGCTCTGTACAATGCACACTTACAGGTGGCAACGCACAGTGGAGTATTAGCTCTCGTACTGTCTTGAATTTTGACCTATTCTCTGGAATTCTGTTCCTCGACATTGGTTCTGTACGGCAGAGGAATTTCACCTCTGATTTCGAGATTAAAGTTCTCTGTGATATTTTCTTATTGCTAAGTGCAATCACATGGTGCTTTTCGTCCTTGCTGTCAACAAGGGCTTATGCACAACGTTTCGCACGGTTCTTGTAGAAATGGCTTTCGTCCACAAA # Right flank : CATTGACAACCCTGCGCAAAAAGCAGATAATAGGTTTATCTTGAATGCAGAGCGAGGGAAAGCATATGCTGTATTTTGAAAACGATTACTGCGAGGGTGCGCATCCGGCGATCTTACAGAAGCTGGTGGAGACCAACTTTGAAAAGGTCTCCGGCTACGGCACCGATCCCTATTGCGCCAGTGCGCGGGAGAAGATCCGCGCGGCGTGCGGCGCACCGGATGCCGATGTCTGGTTCATTTCGGGCGGCACCCAGAGCAACGCCATCGTCATTGCATCGATGCTGCGCCGCTGGGAGGGTGTGCTGGCCGCATCCACCGGCCATGTGGCTGCCCACGAGGCCGGTGCCATCGAGTTCACGGGCCACAAGGTCATCGGCCTGCCGCACACCAACGGCAAGCTGGATGCCGGGACGGTTGAGGACTGGTGCAGGACCTTCTATGCCGATGGCAATGTGGACCACCTCGTGTTCCCGGGCATGGTGTACATCTCCCACCCGTCG # Questionable array : NO Score: 5.26 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:-0.35, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCGCCCACGCGGGGGTGATCC # Alternate repeat : CTTTTCCCCGCCCATGCGGGGGTGATCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCACACGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-13.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //