Array 1 65138-64814 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAPY01000001.1 Gloeocapsopsis dulcis AAB1 = 1H9 1934207_NODE_1_length_356189_cov_130.408, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 65137 37 97.3 36 ........C............................ AATTATTCGCTTTAGATTAATGAATGAATCAACGCA 65064 37 100.0 34 ..................................... GGACAAGCAACCATTAGTTGGAGGACCAAGAAAC 64993 37 100.0 34 ..................................... TTGCTAATCCTGCTTGTGCTGCTGAATTAGGATT 64922 37 100.0 35 ..................................... CGAGCCTTGCATCCTATGGAGTATGGCGATTTCCA 64850 37 86.5 0 ........C.....TA......A.............T | ========== ====== ====== ====== ===================================== ==================================== ================== 5 37 96.8 35 GTAGAAATTCCTTTATTTGAAGGGACTAAATTGAAAC # Left flank : CTCTTTCTTTAGTTGCGTTAATTCTTGGCTGCATCCACTGTAGTTTAGGGTCTTTTTGTCGGACTCGTATAACTCTTTCCGTCTTGCCAAAAAACGATTGTACACAAATCTAGCGCAACCAATAGTCTTATTAATTAAGACTTCTTGGCTGTGGTTTGGGATAAGTGTAACTTTAAACGCTTTTTGCACAATAGTAATAGTAGAGGTGTTTATTTATACTCAATTTTATCACAGATCGGGCGGCTAACTCACGATTTAAAATCACGAGTGTGCGCCGCCCTATTATCAAGGAAATGTCCAGAATAACGGTATGCTGATGACTTCAGCGAATTAAGTTGTTTTGGATTCGCGCATTTGCTGAAATGGTTACGTATCAAGGAGTTCAAGTATATTCTTGTACTTGTGAAACTGTAATTAGTATAATTATGTTGGCAAATGCGAAAGCACTCGCGCACCCGAACCTTGAAAACCGCATACAGAAAAAATTTAAAACAGCCGCA # Right flank : ACCTGGTTTGCTTACACTGGAGTAGGAGCGTAACTAATTCAGTTGTAGACATCTCGGCGATGTCCAACTTTGTGAACCGTAACGCACTGCTTGTTAGTGTCAAAAGAATAAATGATTCGATAGTCCCCAACTCTGAGCTTAAACAAACCGCTCAACTCAGCACTCAGAGGTTGGGGAGTCAAATTATCAAGATTTTCCGAAAGCCAACGGATTTTATTCAGGATACGTTGTTGAATAGTTGAAGTAAGCTTTTTTAAGCCATCTGTTGCTTCTGACGTAAATTCAACATAGTAAGCCATTACCAGTTCAAGCCCAATTTTTTTGCAATTTCCTCAGCAGAAATCCCACGCTCTCCAGCTTGAGTACGATGGAAGGAATCAAGGAGTTGCTGCTTAACCTCCGGCTTGATTTCTTTCCCTTCATCGGGGTCAATTAGCAAGGACTGGATAGTTTCAGCAACGGTTTCTTGAATTAGGAGTTTGAGTTCTTCAATAGTCAGA # Questionable array : NO Score: 8.90 # Score Detail : 1:0, 2:3, 3:3, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGAAATTCCTTTATTTGAAGGGACTAAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 49471-47840 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAPY01000003.1 Gloeocapsopsis dulcis AAB1 = 1H9 1934207_NODE_3_length_229414_cov_126.786, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 49470 37 100.0 35 ..................................... CGCTGCAACGTGGATATAAACCCTTCTCCTTGGAT 49398 37 100.0 34 ..................................... CTTCCTGCTGCTGAGTTGGTAAAAGCTTCTCTTT 49327 37 100.0 36 ..................................... CTTAAAGTCGTGAAACCTAGAACGTACATAGTCAAC 49254 37 100.0 34 ..................................... TTTTCGCTGCACAGTAACATTTGAGATTATCAAG 49183 37 100.0 35 ..................................... TTCATTTGTAGCTTGCAGTTGTGTTGCTGGCTACT 49111 37 100.0 36 ..................................... ACTGCTGCTTCCCCTGCTGCAAGTGCTGGTCTTGTT 49038 37 100.0 35 ..................................... AAGAAATACACTAACCGAACCATGAAAACCAAAAA 48966 37 100.0 34 ..................................... GCAAATCTCCCATTCACGCGTTTTCTGATCATAT 48895 37 100.0 34 ..................................... TCTGCTTTATTAAAATATAATTTATCAGAAATTA 48824 37 100.0 33 ..................................... TCTAAACTGAATATCAACTTGCGTGTCAAATTG 48754 37 100.0 34 ..................................... TAAACTCTGGTGCAAGCATAAGCTGGTACAGTTT 48683 37 100.0 36 ..................................... AAAACTTCATCTGATTCCGGTGAATTTGCTGAAGGC 48610 37 100.0 37 ..................................... TACTAGGCATAGCGGGATTAGAAAGAAAGATTATGCC 48536 37 100.0 36 ..................................... GCGATTATGGTGATCGGTCAAAAACTGACTGTCGCC 48463 37 100.0 34 ..................................... AAATCGCTGCAAGAACTTCTTAAAACAGTCGGTT 48392 37 100.0 40 ..................................... TTGCGATCGTGCGGAATTAATCAGCAATTGAATTTCATCC 48315 37 100.0 35 ..................................... GCTTAGGTGTGGTGGTATTACTGCCCTAGCTTCTT 48243 37 100.0 35 ..................................... GAGGTTCGGCTTTCCTGCCAGCACAAATAGCAATT 48171 37 100.0 36 ..................................... TTCACAGTACCTCAACTCTATACTCTCAGAAGAAGA 48098 37 100.0 40 ..................................... TCTAGCCGCCGCTTATGGCAAGTGCGATAGAGGTACCCAT 48021 37 100.0 36 ..................................... ATATAAAGCAGTGTAGTTTTCTGTGTATAAGTTCAT 47948 37 100.0 35 ..................................... TGAGTACCTAGGCTTTCAAGTATCGGCAGTCGTTT 47876 37 94.6 0 .....................G....A.......... | ========== ====== ====== ====== ===================================== ======================================== ================== 23 37 99.8 36 ATTTCAATTAACATAAATCCTTATCAGGGATTGAAAC # Left flank : ACAAGCGTCGCACCAAGATTCACTCGATTCTCAAATCTTACGGTCAGTGGGTACAATACAGTATTTTTGAATGTAACTTAACTGATAGTCAGTATGCGAGAATGCGATCGCGTTTATCTAAAGTTATCAAAGCCGAAGACAGCATTCGATTCTACTTTCTGTGTGGATGTTGTCAAGGTAAAGTAGAAAGACTTGGTGGAGAACAACCACGCGATGAAACAATCTTTTTTGCTTAGGCAAAACATTATTTGCGCGGAAGGGTAGCTGTTTATCCCAGCTAGACTTTAAAAAAGTCACGAAAGCTTTTATACAGAAGCCTTACAAGTCCCTTTATCCTATCTTTAGATCCGCGCAACTTCTCAAACGCTTATCAGATATAACTTATCGCTTGTAACCCCACTTATTTTATCTGTGTTTTTGACTTTAAATGCTATAGTTATGACTATATCGCGCAACTGCACCATGAAAACCACATACTGTAAGCCTTTCAGCTACCTGCG # Right flank : ACTGTTTTAGATCTTCCTTGATTTTTGTAGTATTTTTCAAATATAAAAAACTCAATCAAGGATTGAGGCTATTAGAAAGATAAATAATTTTCATTCTAATTCTACCTAATAAATTTGGGGTGATTGCATAATAGTATTAACAGAGAAATTAGGTAAAGATATGACATCAGAAGAAATTCAAAAAGCTATTGAAGGGACGCTAGCTGTGCAAAGGAAACTACAAAATACGCAGTTGATAACGAGAGAAGAAATAGCAGATTTAAAAGAATCAACTAGAAATCTAAACGAAATTAGCCAGCGCCACGAGCGTCGCATTGAGCAGTTGCTCGGTTATTCAATAACTGGAGAGGGCGATCGCTTAGATTTGTTGCAGCGATTAATGACTCTTGAGCGTAGAGTTTCGAGACTAGAACAGGAAGATAATGGAGAATCATAGTACAAATTCCTTCTATAATTGCTAAAGCTGGAACTCTTCGGGGTGAAACAGCTTTAATATTTCA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCAATTAACATAAATCCTTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 57309-60763 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAPY01000033.1 Gloeocapsopsis dulcis AAB1 = 1H9 1934207_NODE_33_length_61553_cov_122.882, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================================== ================== 57309 36 100.0 35 .................................... TCATAAAGCGAACAGCCATCCATAACGCTTCTTCA 57380 36 100.0 41 .................................... TCTTGTCTGCTGTTTCTCTTTACGTAGCGTCTCATTTTCGT 57457 36 100.0 43 .................................... AAAACTTCCGGTAGTGTTCTGCTATCCTGTCGATATCTTTATA 57536 36 100.0 41 .................................... TTGATGTAGCGTTTCATTACTCGTTCCTTGTGTGTATGTGT 57613 36 100.0 40 .................................... GGAATAACTCCAATATCTAGCAACTTGTTTACAGTTTGCT 57689 36 100.0 36 .................................... TTCAGTTATTTCACCATCTTCGTACATTGCAGAGAT 57761 36 100.0 35 .................................... ACAACTAACTACAAGTTTGTACACTACTACAACAA 57832 36 100.0 38 .................................... TGTTCATAACACGCTTGAGGTACGCGACCAACTGCGGG 57906 36 100.0 39 .................................... AACAAAGAAGCAACGCAACGCGGTGTATGCAGTACGTAA 57981 36 100.0 36 .................................... TTGAAGATGTAAGCTGCACCTTTCATGTGTTGTCCT 58053 36 100.0 42 .................................... CTTAGACATTGTTAATGCCATCGGTTCTACGGTGGTAGTGGG 58131 36 100.0 39 .................................... ACTTACCCTTCTTCACTTTCCCTGATTCATAGGTTTCTT 58206 36 100.0 37 .................................... TTGAATCAAAGCTTGCAGATCGTACCCGCAGCGGTGT 58279 36 100.0 38 .................................... AGAGACATGATTTTATCCAGCCTTGAGATTGCTTCTGC 58353 36 100.0 34 .................................... TTCAGCTAGAGCTAGACACAGCCGCTAGACAGGA 58423 36 100.0 44 .................................... TCCTTTCTTCTGCTTTGTCTTCGGTAGATACTGCAATTCCTCTA 58503 36 100.0 37 .................................... GTACTGTGTCAACCATGGTATGTCCTTTTCGGCTTAG 58576 36 100.0 46 .................................... TCTAGGGCTATTTTGCGAACTTCGTTGTTACGCTTTTCTTTATTAG 58658 36 100.0 52 .................................... TGACTCCTTCCTTCTTCCTTTCTTTTTCAAGCACAAAGCACAACGACCTTAA 58746 35 97.2 38 .........-.......................... TCAAAATTTCAGCGTCGGGCGCGGCGGAAAATTCATCA 58819 36 100.0 41 .................................... GACGACCATGTTTTGTAACGACTCGTTGAGTTTCTCTAGCA 58896 36 100.0 40 .................................... AGAAATGAAAGACACATTGGAGTACCGCAACGATTGTCAA 58972 36 100.0 36 .................................... AATTCTTCAGCGAATTCTACTGGTATGTGCCAGGAA 59044 36 100.0 36 .................................... AAAAGACGCAAACAGGATGTGGGGAGAGGTAGCGGA 59116 36 100.0 44 .................................... CTTTGTTGCACCTGGTTTGTTGCCAAATCTAAACACGTACTTGA 59196 36 100.0 53 .................................... TTGACAGGTGTAGAACTATGCTTTCTTGGTGGTGTTCCAGCACAACTGGAAAT 59285 36 100.0 38 .................................... ATGGCGTCAATCTGAGACGGTCTTAAACCAGCAGTTTG 59359 36 100.0 42 .................................... TTGTCATCACCAGCTAGCAAGTTAAACACGTCATCTTTAAGA 59437 36 100.0 35 .................................... CTTGTACGTTTGATGTAGCGTCTCATTTCTAGTAT 59508 36 100.0 36 .................................... AATCTTTTCTATTAGGAAAGATGAGCAATGACGGTT 59580 36 100.0 37 .................................... CTTCAACGAACTAAGCAGAGCATACGAAGCTAGGTTA 59653 36 100.0 46 .................................... TTCATCTGTTTTCCTCTGTTTGTTGTGACCATTCAGCAGCCCGTAA 59735 36 100.0 36 .................................... TCCATGTCACAGAACGGTACCTCTTCGAGTATATAC 59807 36 97.2 42 ....................A............... GTGCTTTGGCATTTCCTTCTATCTCCTGTTCAGCTATGAGAA 59885 36 100.0 45 .................................... GTCTGTTGAAAACTAATGAGTGCCTTGATAGCGTAGCCTAGCACG 59966 36 100.0 41 .................................... TCTACATCTGATCAATCTTGTGAACGACAGGAACGTGACTT 60043 36 100.0 39 .................................... CTTTACATCAAATTATTCAAGAAAAAGATGTAGGAACTA 60118 36 100.0 37 .................................... TTAGGGACTGGTGGAGGACTACTACCAGAACTTAAAG 60191 36 100.0 36 .................................... TGAAACTGATAATAGTTTCGCCTTCCGGTAATGTGA 60263 36 100.0 38 .................................... AGCCAAAAGTGAACATAGTTGGCAACAACCTCCAGTTT 60337 36 100.0 45 .................................... CCATCTGGTACATCACTTGGATTGTAAGTATAAGTACTCTTTAAC 60418 36 100.0 39 .................................... CCAGAAGCCCAGTGTGCATGCTGGAAAACGTTTTGGCGG 60493 36 97.2 41 ........................G........... TCTTCCATCATCTCGCTTATGCTAGGTTTATCCGTCTTCAG 60570 36 100.0 40 .................................... CGCCTGGAAGCTGGCACAACATCAGCTAAACAGCGGTACT 60646 36 100.0 46 .................................... CCGCTGCTACATTGGGGAGGAGGAAAGCTGGGAGAAATTGGAGGAA 60728 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ===================================================== ================== 46 36 99.8 40 CTTCCCATTAATAGGGGAAATTAATTGAATGGAAAC # Left flank : CAAACCTTACCTTATCCGCTAAATTTAACACCGTCAAATGTTGCTTTACGTAGTAACCTACGATATTCCTTGCGATCGACGTCGAAAAAAAGTTTCTGATTTATTAGAAGGATACGGACAACGAGTACAGTACAGTGTATTTGAGTGTGTTCTTACTACTAATAAGTATTGGGAATTACGCCAGCGCTTACGCAAGAAGGTTAAGAAGGATGAAGATAGTGTTCGTTTCTACCCTTTGTCTGGTCATACATTACCGAAAGTAGAAGTCTGGGGAGGATTACCAGTTGTGCAAATACCTGGCTCAGTTATTGTGTAGAGCACCGCGAACAATAGTGCAAATACCCAGAATAATTATTGTTGCGATATAACCCTCGATTATCTGTATGATAAGGGTTAAGGGAATTTTATTTCTTTTAGCTTATGCTTCTGTGTAGCTCACATCAACATCCCTCGTATTTGGCTATTGGACACCTTGCAAAATAAAGGCTTTAATATAAGGG # Right flank : CATGAAAATATTAAAGGTGACCTTAGGACAGTGTTTAGCTGAAATGATAGCTGTACAACAATTCAATCATCAAGAAAATCATTCAATTGATGTTACTAATTACTACATTAAAGAAGTAGAAAACTTTTGGGGTTTTGTTATCTATGTTTGATTAGCATCAACTGTGAGGTTCATTTCTGATATAGATACACAATCGTTTTCGATCTCTAAAGCAGTGATTTTATTCAAATCTTCGTTGATTTTTTGCTCTACTTTATATAAGTTGTAAACACTTTGCAAATTTAACCAAAACCCTGGAGTATTGCCAAAGTATTTTGCAAGCCTTAAAGCTGTATCTTCACTAATGTCCCTGCGTTCGTTAACTATGGACTTAATTCTTTTGTACTCTACACCTATTGCATTAGCTAACTGTTGTTGATCTATACCTAAATTATCCAAAAAGTATTTGCGCAAAATCCTTCCTGGATGTGGTGGTTTTCTATTTTTTGGTACTCTCATGC # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCCCATTAATAGGGGAAATTAATTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //