Array 1 1142710-1143961 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP022098.1 Escherichia coli strain WP4-S18-ESBL-09 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1142710 29 100.0 32 ............................. CTCAGCGGCAAAAAATACGATCTCGCCGGTGT 1142771 29 100.0 32 ............................. GCAAACCGGCATCAGATATAAGCTGTTCTCTT 1142832 29 100.0 32 ............................. GACTGACACAATCTCAACTTGCTGAATTAACA 1142893 29 100.0 32 ............................. AATGGCGCTGCCGATCGACAAATGGGACCTGG 1142954 29 96.6 32 ............................T ATCGGGTTCCCTTTTAATGTGATTCCGAATTC 1143015 29 100.0 32 ............................. GCTTTAACTCCATTTATCAAAGCGCAATTAGA 1143076 29 100.0 32 ............................. ATAGCTGATAGCTCTCTCAATAATTAACGGAT 1143137 29 100.0 32 ............................. CCCAGCCAGCGCCCGGCGCGCCTCTTTAACCT 1143198 29 100.0 32 ............................. TTCGCCAGGTGTTTTCTTTTCCCGGTCAGTCA 1143259 29 100.0 33 ............................. GGCTGGCATCAGATTTCTAAGGAATACGACAAC 1143321 29 100.0 32 ............................. ATTTAGCCCTATCTCAACGTTCAGGTGTTTTG 1143382 29 100.0 33 ............................. CGGGAGCCAGTGCTAACGATATCGCGGCCGCGC 1143444 29 100.0 32 ............................. TTGAAATGTGGCCACACCGTGTTAATGTATGG 1143505 29 96.6 32 ............................A TTCCGGCTACTTTTGTTGCTCCCTGCTCATCC 1143566 29 100.0 32 ............................. AATATTTACTTGGATGCGTCGGACATTGAATC 1143627 29 100.0 32 ............................. GTCCGGAGTCTTCCCGGTGTTCAGGTAGTTAA 1143688 29 100.0 32 ............................. GCCGCGTACATCAACGCAGCAGCAAGCGCATA 1143749 29 100.0 32 ............................. TTAGTTCAGGATGCATAATGAAATACCCGACC 1143810 29 100.0 32 ............................. TCAACGAAAACGCAGAGCGAGGAACGGATATT 1143871 29 100.0 33 ............................. CAGGCAACATTTACCGCCGGTCAAAAACAGGAC 1143933 29 93.1 0 .......................G....A | ========== ====== ====== ====== ============================= ================================= ================== 21 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCATCCATCTTGCCCATCCTGAACTAATCATTATCATTCTCTACAAATTCTGTGGCGTTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCTGTACTTGTAATAAGCAACATATCCACATAACACCTCATGTTCAAAATAGTTCTCCATGCCAGATAAGTTCACAATTATCGATACAAAAAATCAAATTTAATCAAAGTGTTATTTGTATAATCCTTAAACCGTTAAGAAATTTTAATATATTATTTTTTTTAATATTAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTGTATTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAACAACAGGGATAAACGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1169508-1170329 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP022098.1 Escherichia coli strain WP4-S18-ESBL-09 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1169508 29 100.0 32 ............................. CAAACGTCAGGCGGAAGTGTTCCGGTCATATA 1169569 29 100.0 32 ............................. GACCAGTCGGGCCAGACATCGGGGACGCAGAA 1169630 29 100.0 32 ............................. CCGACCGCCATCGCGCATTTCGTCGAACGTCG 1169691 29 100.0 32 ............................. CAAAAAAATAATATCCGGCAGTCTGTACGGTA 1169752 29 100.0 32 ............................. CAACATTTTCCAATATCACCCAGCAATCAATT 1169813 29 100.0 32 ............................. TCATGAAGGCTTCGATTATTTCTTGATACCTG 1169874 29 100.0 32 ............................. ATTTCATTAATTTTGCAGAGAAGTGTCTCGAA 1169935 29 100.0 32 ............................. CAATAACACCGGCATTTGTCCACGACAATATT 1169996 29 96.6 32 ............................A GCGTAAGAAAACAATTTTTTCAGAAAACTAAC 1170057 29 100.0 32 ............................. TACAGTTTCCATAAATTCACCTCGTTTATATA 1170118 29 100.0 32 ............................. GGAAATTAGGCAAATGTGAACACGGCGGCCCC 1170179 29 100.0 33 ............................. CCATAACCACCCCCATCATGAATATTTTCCGGC 1170241 29 100.0 32 ............................. GGCGCACTGGATGCGATGATGGATATCACTTA 1170302 28 72.4 0 ..A........C..T..-..T.G..CT.. | ========== ====== ====== ====== ============================= ================================= ================== 14 29 97.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCTGTTTCACTGGGAGATGCAGGCCATCGGAGTAGCTGAAATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTGTATGTAGGTGATGTATCCGCAAGAATCCGTGAAATGATCTGGGAACAAATATCTGGACTGGCGGAAGAAGGCAATGTGGTGATGGCATGGGCTACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACTCCGGTAGATTTGGATGGTTTAAGGTTGGTCTCTTTTTTACCTGTTTAAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGTTTCTTCACCAGCGGTAGTATTATCCGCATAACATCACGGCAACGACGTTCTATTCTTCCAGGAAGCGCCTTATCAATATGCTGTTGATTATCAAGCCTTACATCATGCCAGCTATTTCCCGCCGGGAAGGCCGGTGTTTTTGAGCGTTGCTGATAACCATCCTTATTTCCAAGATTCCAGTTGGTCGCCTCCACCGAAAGTACCGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACAATTAAGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTTTCGGTGTCACTCATCCGC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //