Array 1 17179-17673 **** Predicted by CRISPRDetect 2.4 *** >NZ_WKPN01000015.1 Gordonibacter pamelaeae strain BIOML-A2 scaffold15_size87222, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 17179 36 100.0 29 .................................... TGGCCAAGAATTCGGGGTGCTGGGTCGCC 17244 36 100.0 29 .................................... TGATAGAGGACGGCTACGGCGGGGCGGCG 17309 36 100.0 30 .................................... GCTTCGGTGATGGGCATGATGACACAAGGA 17375 36 100.0 29 .................................... ATCCAGGTTGCGGAAGTTGCGGAGGTTGC 17440 36 100.0 30 .................................... TTTTTATGCCCAAAGGAGGTGGTTTCGCCG 17506 36 100.0 30 .................................... AGGCGGCTGATGCGCTCGCTGCATTCGCTG 17572 36 75.0 29 .....A.T..G.....G...C.....T..T...GG. TAATCTTGGGCGCGTAGCCTTCGGTAGCC 17637 36 75.0 0 ..........G...G.TGG.G.......G.A....A | T [17670] ========== ====== ====== ====== ==================================== ============================== ================== 8 36 93.8 30 GTTTTGGAGCAGTGACAAACTGACTGGTAGTCAAAC # Left flank : CGCTTATCGGCGAGGTGATTGAGCGTTTGGAGGACATGGTTTTGTCCGAGGACGAGGTGCGCCAGGAAATCGAGGCGGCGGGCTTGGCTTTGTCGAACCGGGTGGCATCGCTCGGCCTGCGGCTTCAGTCGGACTACGCTTTTGAAGTACAATGGGAAATGCGGAAATACCTGAAGGCCTTCGATTTCGGCGTCGAGATCGATCCTTCCGACAAGCTCCTTGACAACTTGATAAAGTTCTTGAAGTTTGCGTCGGACGCTGCGTTCGGAAAGCAGTTGGTTTTCGTGAATTTGAAAAATTTTCTGACCGGGGAAGAGGTCGAAGAGTTCTATCGGCAAGCGATTTTTTCGAAGTTGCACGTGCTGCTGCTTGAGAACGCGCCCGATGACGCAACGTATGAGATTGAGAGGAAAATGCGCATTGACGTGCATTTTCTGCAATCATGAAAAGCTATGCCAGCCGGTTGTCCGTTCTTCTGCAGAAAGAATTTTGCCCCAACG # Right flank : ACGAATAGGATGACCAACCGGAGGGCATCGCTTTAAGATACAGGGGTGGGAGGGTGTGAGGTTGGATGCGTCTTCCGTCGTCGGTTAACAATTGCCGGTGGTTTTCAGGGCGATTGACTGTACCATAATAGGGATAGATAGTTTATACTCGCACGTAGGGATTGCAAGCGGACCTGTTGCGAGGAGGAACCATGGCCGTCAACCGTCAGAAGCTCAAGCTGCTGTATCTCATGCGGATGCTCGAGGAGGAGACCGACGCCGAGCAGGGCCTCACGATGGCGCAGATCCTCGAGCGGCTGGAGGCACAGGGCATCACGGCCGAGCGCAAAGGCATCTACCGCGATATCGAGGCGCTGCGCGAGTTCGGCTTGGACGTGCGCACCTATCAGCGCGCGCCGGTGGAGTACGCGCTGGAGCGGCGCGACTTCGCCTTCCATGAGCTGTTGCTGCTGGTGGACGCCGTGCAGAGCTCGCGCTTCCTCACGCAGCGCAAAAGCGAC # Questionable array : NO Score: 5.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGGAGCAGTGACAAACTGACTGGTAGTCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.60,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-19] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 76937-77300 **** Predicted by CRISPRDetect 2.4 *** >NZ_WKPN01000008.1 Gordonibacter pamelaeae strain BIOML-A2 scaffold8_size146901, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 76937 32 96.9 34 ........................A....... CGAAGGCGCACTTGATGACGAAGCGATCATGCGC 77003 32 96.9 34 ........................A....... GGCCGGCGGGAGGGGCGCCGCGTGGCGCTGCCCC 77069 32 100.0 35 ................................ ATGATGCAATCACTTACCATCTGCGGTAGCTGCTG 77136 32 100.0 36 ................................ CAGAAGATCGTGCAGGGCCCCCAAACGCTTTCCATG 77204 32 100.0 33 ................................ AAAAACACGTCGCCAACAGTCATTAAAGATATG 77269 31 87.5 0 ..........-.C.....T..C.......... | C [77283] ========== ====== ====== ====== ================================ ==================================== ================== 6 32 96.9 35 GTCGCGCCCCATAGGGGCGCGTGGGTTGAAAC # Left flank : GGCCCCTGCATCGGCTCGGTCGGGCTCATCCCCGACCCGCAGCGGCGCAACGTCGATGCCCTCATGCTGGGGTACTCCCTGGCGAAGCCCGCCTGGGGCCGGGGCTACATGACGGAGGCGTCGCGTGAGGTTATCCGCTACGGTTTCGAGGAGCTGGCCCTCGGCCTGATCTCCTGCACGCATTACCTGTTCAACGACCGCTCCCGACGCGTCATCGAGAAGTGCGGCTTCGAACGCGAGGGCGTCATCCACGCCGCCGAGCCCGCCCCCGACGGCACCATGCAGGACCTGGCGACGTACTATCTGACGCGCGCGTCATGGGAGGCTGCCTCGCACGAGAGCGCGCGAAACGGCGCGAACCCGAAGCTCCGGCAATCCACTCAAGAGGTTCGCGCAGAATGACACGTTCAATGGTGCTGCCTGCTGGTTGCGCGAGGTGCTACGCATGTTGAAAAATGAATACTATAAGTGAAAAATGCACTATCCTGCATAAACTACCA # Right flank : CTGGGATTTCCGCAACGTGCCGACGAGGAAGCAGGTCGAGCCCTCACAAGCTCGCGGGTTGGAACGAGCGCTCCCACAGTGGTTTCTTGCAGAACTGGTTGATCATGGCGGGCTCTTTCGCGAAAGCGGCGCCGCATGCGTCGATGGACTGGACGGGTTATTTTCCTTCGAAGACGATGCGGTTGCCGAAGCTCGCCCGCCCGACTTCGCGCAAATGCTATGGCGCACTCCTCGACGGGCGGTTGCAGCGAGCGGCGAGCCGACTGGTGCGGTCCCTGCACTGGCAAGGAGGCTCAACGAAGGTTGGAGCTTGCGGCGACCTCCAAGCAGTTGGTCTATAATTCTCGTTCGTAGAAAAACGGGGGAAGGGAATCCATGGCATCGGAGAAGCAGTAGGCGGGGCGCGCCTTAAGGCGGTTGGCGCGGAGGAGCCCGCTTGTCGCCCTCGCCATTGCGGCCGTGCTCGTGGTCGGCGCCGCGCTCGGATGGTTCGGCGCTGC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCATAGGGGCGCGTGGGTTGAAAC # Alternate repeat : GTCGCGCCCCATAGGGGCGCGTGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCCGTGCGGGCGCGTGGGTTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.30,-9.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //