Array 1 1125-2968 **** Predicted by CRISPRDetect 2.4 *** >NZ_WCFJ01000038.1 Lactobacillus helveticus strain IMAU70168 Scaffold39, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 1125 32 100.0 34 ................................ TAAGTGATTGTTGATACTCTCTCTGTTTACTGCC 1191 32 100.0 35 ................................ TATCACAGAAAGCAACACTGCTACTTGGCATTCAA 1258 32 100.0 34 ................................ ATCATATGAACCACGAAGCTGGCCAATGATAGCC 1324 32 100.0 34 ................................ TAAGTGATTGTTGATACTCTCTCTGTTTACTGCC 1390 32 100.0 34 ................................ ATCATATGAACCACGAAGCTGGCCAATGATAGCC 1456 32 100.0 34 ................................ TAAGTGATTGTTGATACTCTCTCTGTTTACTGCC 1522 32 100.0 35 ................................ TTTCAAAGTGAGACAGTTAGCTGCTGATCTTACAA 1589 32 100.0 34 ................................ ATCATATGAACCACGAAGCTGGCCAATGATAGCC 1655 32 100.0 35 ................................ TTTCAAAGTGAGACAGTTAGCTGCTGATCTTACAA 1722 32 100.0 39 ................................ TCACACTTGGAGAAACTTCAATAGCAAGCTTATCCTCTG 1793 32 96.9 35 .............................C.. TTTCACAGTGAGACAGTCTGCTGCTGTTCATACAA 1860 32 93.8 39 ...................T..........G. TCACACTTGGAGAAACTTCAATAGCAAGCTTATCCTCTG 1931 32 100.0 39 ................................ TCACTATGGACTCTGGTGATGTTTCCGAATAATCAAGCC 2002 32 100.0 35 ................................ TCTAATTCATGTAGGGGTTACGATTAAGCTTACTG 2069 32 100.0 35 ................................ TCTAATTCATGTAGGGGTTACGATTAAGCTTACTG 2136 32 100.0 34 ................................ TCACTCCACTGGTTTAGGAACTTACTAGCTTGGG 2202 32 100.0 35 ................................ TCTAATTTATGTAGGGGATAAGATTAAGCTTACTG 2269 32 100.0 36 ................................ AGCATATGGAACGACAACCACGATACTTGTTAAGCC 2337 32 100.0 34 ................................ AACCAAGCACGCCACGAAGCAGCCGGTGCAAAGT 2403 32 100.0 36 ................................ AGCATATGGAACGACAACCACGATACTTGTTAAGCC 2471 32 100.0 34 ................................ AACCAAGCACGCCACCAAGCAGCCGGTGCAAAGT 2537 32 100.0 35 ................................ CTTAGCAGACCCGTCTGCACTAGTACTTGCATTAC 2604 32 100.0 34 ................................ CATTTGGTAGGGGCGTGTGGATAAATAGACAGCT 2670 32 100.0 35 ................................ CTTAGCAGACCCGTCTGCACTAGTACTTGCATTAC 2737 32 100.0 34 ................................ CATTTGGTAGGGGCGTGTGGATAAATAGACAGCT 2803 32 100.0 35 ................................ AAAAAAGCTAAAACCGTTTTAATAAATAAAGGAAA 2870 32 100.0 35 ................................ AAAAAAGCTAAAACCGTTTTAATAAATAAAGGAAA 2937 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ======================================= ================== 28 32 99.7 35 GTCGCACTCCTTGTGAGTGCGTGGATTGAAAT # Left flank : GGAGATCTTGACGAATACCCACCGTTTATGTGGAAGTAGGTATGCAGCATGATGGTAGTAGTTAGTTACGATATTAATACGGAAAGTAAATCTGGTCAGCGAAGGTTACGTCATGTAGCCAAAATATGCTTAGATTATGGACAACGAGTTCAAAATTCCGTTTTTGAATGTAAAGTTAATTCGATGCAATTAGAGTTGATGAAAGAAAGACTACTAGACGAAATCGATGATAGCCAAGATAGTTTGTATTTTTTTAATTTAGGGAAGAATTATAAAAATAGAATTAAGTCATATGGAATTAAAGAGGTTATAAATTTAGAATCGCCTGTAATATTTTGATATCGGTGCGAACTGTATGTGAACATGCTTTTAGTGAAGATTCGCACCAATTTTAAACAGGTGAAAAGTGATCTTTTGATAAAAAATATATTTTTATCAGGGTAAGTTAATTTGAAGCCCAATATTTAGAAATGAATTGAAATCATGATCTAAATATTGCG # Right flank : TTTTAGGTCCATTGCGCTCTTGCCAGTGAAGTCGTGTCGCACTCCTTGTGATGCACTTGTGGGTGTATTAGTCGGCTTCTTCAACCCAGGCTTGAAGTACTAATTATTAAGAGGAGATTATTCAGATGACAATCGAAGAGATGCAAAAAGGCTATCAAAATGAAGTTGCTTATCAAAAACATATGCTTCGCAATCTAGGCTATTGATTCCAACTCTTTTTAACAGTTAGTGCGATTGGTTTGGTTTTAATTTACTATTTCCATCAATCAACTATGTGGCTCTTTATAATCGGAATTATTCTGATGGTCGCCGGTGTTTTAGGAATGTTTGCTTTTGGCTATGCTTCTTGGCGCGGACGGCAGAATGTCACTCTGGTAATCGAAGACTATGAGAAAAAGATTGCAGAAATTAAAAAGTTAGATCAAAATGCTTCCGGAACGGAAAAGATCCGTTTCAAATGATTCTTATATGAATAAAACAATTTCCCCTTCTCTAGAAAT # Questionable array : NO Score: 5.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:-3, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.50,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //