Array 1 142929-141759 **** Predicted by CRISPRDetect 2.4 *** >NZ_VATP01000016.1 Escherichia sp. E2748 sequence16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 142928 28 96.4 32 .C.......................... GAACGCCGTCAAAAGGCTGGCCGAAAAATTGC 142868 28 96.4 32 .C.......................... TAACCCTCTTAGCATGTACGCGGTCGATGCTG 142808 28 100.0 32 ............................ CGCCAATACTGCCGACAAAAACACAAAACTAT 142748 28 100.0 32 ............................ AGCCACACAGATCCTTAATTCCAGTCCACAAC 142688 28 100.0 32 ............................ ATCTTCCGTGTCGTGAATAGAGCCTACAAACC 142628 28 100.0 32 ............................ GACGCGGAACGTGCTGATCTGCCGGGAATCGT 142568 28 100.0 33 ............................ CTGTACGTAAATATTTACGTGCGTGGAATCAAT 142507 28 100.0 32 ............................ TCAACAGAGGCCAAAGCGCGGCGCATTTCAAT 142447 28 100.0 32 ............................ CACTCGGTGGTAATTGCACTACACTGTAAATA 142387 28 100.0 32 ............................ GTAACGTAACCGACGATAACCAGCCTCGCCAA 142327 28 100.0 32 ............................ ACAGGGTGATTCCGGTTGCCACGCTGATATAT 142267 28 100.0 32 ............................ GGAACGATTGTTCAGACTGAACGCGTTAACAG 142207 28 100.0 33 ............................ GCAGAACGGCCCCGCAATGACAGCTACTGAAGT 142146 28 100.0 32 ............................ ATCCGCGTACTCCGCCGCCTGCCTGGCTGAAC 142086 28 100.0 32 ............................ CTTTCTTACGTGGAATTAGCAAATGCAATCGA 142026 28 100.0 32 ............................ GCTGTGATATCAGCGGGCTGAATCTGCTCTAT 141966 28 100.0 32 ............................ ATACAGCGGAGACGTAAAGCTCAGGTTGTGAA 141906 28 100.0 32 ............................ GTTCGTCGCGCTCAACGGCTATTGAGTCCGCC 141846 28 100.0 32 ............................ AGAACCATGACAACCGATCAGGTCAAAGCCCT 141786 28 89.3 0 ....................T..TC... | ========== ====== ====== ====== ============================ ================================= ================== 20 28 99.1 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCTGACCTCATGGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTATATGGATTGATTCGTTTGGTTACGCAATGAACATACTGTTCGCGCCCGGAGATTTTGACCGTATGTGTTCTGGTCAATTGTTTATCAAAATCTATGCATAAAATATGAGATTGAAGAAGTACCAAATAGACCCTTTTTTTAGGTTGAAATGTAACTCATTGATTTTGTTTATTGCTTTTTTGATGTCTGGAAAAAGGGTTTAAATCTGCGACTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCC # Right flank : CACAACACTCCATCCTCCAATATTTATTCCCCGTAACTCCAAACGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAGCAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGTGCGCTAATTCGCAACAAACAGGTTTGGCACATAACTCCGAAAACACACGGCTAAGCCGCACTATAAGCGCAACGTATAAGGGAGCGGTGAGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 207825-208813 **** Predicted by CRISPRDetect 2.4 *** >NZ_VATP01000005.1 Escherichia sp. E2748 sequence05, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 207825 28 100.0 32 ............................ AGTTCGGGCCGAACAGCTCAAGTCCGATTTTT 207885 28 100.0 32 ............................ GTTTCGCTGTAAACGTGCAACTACTGGACGAA 207945 28 100.0 32 ............................ CGGTGGCGGGTGCCGTCGCGCCGAGATTCGGC 208005 28 100.0 32 ............................ ATTAAGAACAAAGTCCGTACCCACAAAACCCA 208065 28 100.0 32 ............................ CTTCAGTGCCACCCACTAAATCGCAATACCAC 208125 28 100.0 32 ............................ ACAACACGGCCTAAACAGCAACTACTTTAAGA 208185 28 100.0 32 ............................ ATACACGGATGAGGCCCGTGAACAAATTAATG 208245 28 100.0 32 ............................ TGTCCGCGCGATTTCATTGATTAGCTGAAACC 208305 28 100.0 32 ............................ ATGTACGCGAGATACGCGTGATAGAGATAAAC 208365 28 100.0 32 ............................ AACCGGCGACGCCGTTTTCACCGAGCTGGCCA 208425 28 100.0 32 ............................ AGGGTGGCACCCGGATCATTAATATCGCCCAA 208485 28 100.0 32 ............................ AGTTGATTGACCCGCAGCGCTGCCCGATTGAT 208545 28 100.0 32 ............................ ACCATGACGCTTACTCCAGCTCTCGTCAGTAA 208605 28 100.0 32 ............................ TCTACATTCAGGCCTTTCTCGCGAATTCGGGC 208665 28 100.0 32 ............................ GGTAGTTTCTGTCCCGGAGCTGGCTGCTGCCG 208725 28 96.4 32 ...........C................ TGTTGAGCAATGTAATCGGGGTCAGATACATC 208785 28 92.9 0 ....................T...C... | C [208808] ========== ====== ====== ====== ============================ ================================ ================== 17 28 99.4 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGTTTATCGTCGAGTTGCAGGTTCAGTTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCTGAGAAAGGTTACGACCGGGCGATGGGCGCACGTCCGATGGCTCGTGTGATTCAGGATAACCTGAAAAAACCGCTCGCTAACGAACTGCTGTTTGGCTCGCTGGTGGATGGTGGCCAGGTGACAGTCGCGCTGGATAAAGATAAAAATGAGCTGACCTACGGGTTCCAGAGTGCACAAAAGCATAAACCGGAAGCCGCGCATTAATCAGATTGTTAAGTAGGTTGGTGAAGTCCGTAATCTCGTCAGAGGTTACGGACTTTTTGTTTATGGGGTGGGGGAAGTTCGGACCCTTTTTTTGATGATGATGGTAAGTTGTTGATAATTAACGCTGCTGAAAGGTAAGAATAAAAAAGGGTTGCAGCAGGAAAATGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : ATACGATGATGGCAGAAATTTAGCTGCGTTATGGCGTTCTCAACTCCGAACCATTAGCCACAACACGCAATAACAATTGTGATAATTGCGATAGAAATCAATTTCTCGCACAGAAATCAATGTTGTACTAATCCTAACTCCTTCAAATAAAAATAATCACAGGATGTGTTTATGTCTTCCAATTACCTTACTCCATCTGACCTCAAAACCATTCTCCACTCTAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTGCAGGTGAATGGTGGGCGAGTGGAATATGTTACCAGTGAAGGTAAGGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCATTGATGTTGGGGATGGGAACATCCGTTACTCAGGCGGCGATGCGTGAATTTGCCCATGCCGGGGTGATGGTGGGTTTTTGTGGTACGGATGGCACGCCGCTGTATTCGGCAAATAAAGTTGATGTCTCCTGGCTCAGTCCGCAAAGTGAATA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //