Array 1 55746-54806 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJUD01000004.1 Listeria seeligeri strain BCW_4759 PROKKA_contig000004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 55745 29 100.0 35 ............................. AAAACTCAGATATGACCGTTAAATCATTCATTGCT 55681 29 100.0 36 ............................. CGCTTGGTCTCTGCGTTAGTTATGAACGTTGAGCCT 55616 29 100.0 37 ............................. TTAAAATAAACATTGAGAAAACCTAATCCCCCATCGA 55550 29 100.0 35 ............................. GGGGGATTGGCCTTGGTAAATGATGCTACAAGCAG 55486 29 100.0 34 ............................. CTTTTCTACCAAGTTTTTATAGGCTTTTTGCCTT 55423 29 100.0 37 ............................. ATGACAAACGCATACGCTGCCGATTTAAACGTTTTCT 55357 29 100.0 37 ............................. ATTACTGATTGCGCCTTCATGGTATGATCGTATAAAG 55291 29 100.0 36 ............................. ATGCTTACCATACAACCCGCCATAGCCGTTTTTTCC 55226 29 100.0 36 ............................. TTAATACTTCCTTCCTCTTTCAAAATCCCCTCAAAA 55161 29 100.0 38 ............................. TCTTAATCCCTACATATGCAAGCAAGAACGTAACCAAC 55094 29 100.0 36 ............................. CCTGTCCCACCGACGACGAGCGCATGCGGATTAGCA 55029 29 100.0 37 ............................. ATTTTTATGTTCACAACAAAGTTTTGCATGTCAAGCG 54963 29 96.6 34 .......C..................... AAAGCCGAATAGGCTTATTTTTTTACGACAAATA 54900 29 100.0 37 ............................. GTGGTCACAGCGTTCTTATTGCCAGCTGGTGAGCCCC 54834 29 72.4 0 .......C.G.....CA.....CA...CC | ========== ====== ====== ====== ============================= ====================================== ================== 15 29 97.9 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : CTTCAAAATTTGGTGGTGAATATATGTATGTAATTTTAATTTATGATATTTCTGTGGAAAACGGTGGGGCAAAGGTGTGGCGCAATGTGTTTAAGATTTGTAAGCGATATTTAACACATGTCCAAAAGTCTGTATTTGAGGGTGAAATAACGCCAGCTCTTTTAGTGAAATTACGGATGGAGCTAGACAAATATATTCGTTCAGATATGGATTCAGTGATTGTCTTTTCCAGCAGGCAACAAAAATGGTTAGAAAAAGAATTTTGGGGACTGGCTGATGAAAAAACGTCGAATTTTTTCTGAATAAATATTTCTGTCGACCTCCAGTAGTGCAAAAAACACTGGAGGTCGACAGAAACGTGGGAAGCCTTTGGGGAGAATGGTTTTCGGTGAATATGCTTGTTTAAGTCGAGAAAATAAGATAGATCTCACCTGCTTTTTACGGTGGTCGACAAAAACAAGCCCGTGAGGTAAGATGGGAGTAGGGAAAGATATTGGCGG # Right flank : CCACCCACCCTTAAAGCCAATAATCTGCTCTAAGGTTTTTTTATTCGAAAAACCCCACCCCCAACCTCCCATTTTTTTCGTCCAGCGAAAACCGTTTTCGAAATACTTGTAACCGCTTGCAAGAGTGGGGCTCTATAACTATAATGAACGTAGTAATTGAGTCAGATATAATATTTTTTCAAAATTAGCTAACTGGAAAAATAGAAAACGGAAAAATGGAAATATTTAATCATGTTTTCATTTTAATCTAACAAAAAGGAGAGCTTAAGTATGAAAAAAATCGTATCAATCGGTTGTATTGTGGGACTTTTAATGCTTCTAGTAGGGTGTGGAAGTGAAGAAGCTTCAAGTTCAAAAGTAGAGTTTTACACGGATAAAGGTGGAGAAAATGTTGGTATTTTGAATTCTATGTCAGATCAGATTGAAAAAGATGGGGGCGTTGGGTTTAAAACTGTAGGATATACGGATGTGACATCTTATGAGACAGCGGTCCAACAATC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 67878-65525 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJUD01000004.1 Listeria seeligeri strain BCW_4759 PROKKA_contig000004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 67877 29 100.0 35 ............................. TTTTTTGCCTGTCCATTTTGGATAAAACATTGCCC 67813 29 100.0 35 ............................. TTATTTGAAGCAGTTGAATCATAGTAAGGAACGGT 67749 29 100.0 29 ............................. AATACTACACGTCACCCCACGTTAAACAA 67691 29 100.0 36 ............................. TTTTTTTCTACTATCTATAATTACTAGACAAGTCCC 67626 29 100.0 35 ............................. ATGTGTTTCCGGATGCCAACCAGACCGTGACTTTT 67562 29 100.0 36 ............................. TCTTAAAGTCGTACGGCACTACTGTAGCATGTATCT 67497 29 100.0 35 ............................. GTTTCAATTAAAGCTATTCTCTGTCTGAAAGCCGG 67433 29 100.0 36 ............................. TTTGGAGGTACGCATTTTACTGGTACAATTATAGTA 67368 29 100.0 36 ............................. TTCAAATACACTTGCCCTTTATCCATATCAACATCT 67303 29 100.0 37 ............................. TAGAGTAGCCAGTTGGGAAAGGTGTCTCAATGGATAA 67237 29 100.0 37 ............................. TCGGTTGGGAAACGAACATACAAATAGCCCTCTTTCA 67171 29 100.0 37 ............................. ACAAAAATATGACTATAATCTCATTGAGACTTTAGCG 67105 29 100.0 37 ............................. TCGAAAGAGAAATATCAAACGTATTTATCCCAATTAC 67039 29 100.0 36 ............................. TCGCTTAAATAGTCCCGCGGAATTCGAGGCGACGTT 66974 29 100.0 36 ............................. TCTTTTGTAGAAGCGTACAAAGAAGTGGTGTCTATT 66909 29 100.0 35 ............................. TGCGGTAAATCATATATTTCTTCTCCGCGTTCGTG 66845 29 100.0 36 ............................. TCAACACGAACAATAGCAGCTGGGAATCGAACAACA 66780 29 100.0 37 ............................. GATAAGCTATCATTGCTAACAACTAACTTAATTTCAA 66714 29 100.0 35 ............................. CCTTGAAATTAGTGAAAAAATAGAGAGTTACGTTG 66650 29 100.0 37 ............................. ATTTTACCTAAAGTTTCCGCATTTAGAGGTAATACCG 66584 29 100.0 36 ............................. AAAGGTGGCGGTTTTCTAGGCATGTGTTCCGACGAT 66519 29 100.0 35 ............................. TTGTTCGTCTCTTAATTCTAATAATCTAGCAATTA 66455 29 100.0 36 ............................. TTAAATATCACATTTTGGTTCACATTAGCACTAATT 66390 29 100.0 35 ............................. ACATAAAAAACATAAATTGGTTCACTGTCATCTGG 66326 29 96.6 34 ...........A................. TCATTTTCAAGCAGATTCAAAAGAATGTTTTTCG 66263 29 100.0 35 ............................. CTGCTCAAATATAATTTTTTCTGGTAATTCTACCA 66199 29 100.0 34 ............................. CAACATCGCATAAATTCTACTTGCATCGTCGCTC 66136 29 100.0 36 ............................. CTTCGAATTTGCTGTCTTTGCTGAATATGAAGTATT 66071 29 100.0 35 ............................. ACCATCAGCAGTTGAATCATCTGTCATTAATTTGT 66007 29 96.6 38 ............C................ CCCGTAAACAGTAACGTTCCGTTCAGATACACTTTTGC 65940 29 100.0 37 ............................. TTAAATGTGGTAAAGATCAGGTTCCGAACTTTGATGA 65874 29 100.0 35 ............................. AAAGGAACAAAAAATACCTTTAAATCAACAGATAC 65810 29 100.0 35 ............................. CATTTAGTGAAAGTTGGCGATAAATCGTGGTTGGC 65746 29 93.1 34 ..........G.....A............ GGCGAATTAGTCGACGTTTATAAAAAAGCATTAT 65683 29 96.6 36 ..........G.................. GATGCTGCGTTTGATGCTGCGGCTGAAGTGAATTCT 65618 29 100.0 35 ............................. ATATACGGTATCCGGTATACTCGCCGTCCCATTCT 65554 29 86.2 0 ........C....C..A...........G | T [65527] ========== ====== ====== ====== ============================= ====================================== ================== 37 29 99.2 36 GTTTTAACTACTTATTGTGAAATGTAAAT # Left flank : AAAAAGTAACCGTCCCATCTTTTTTCTCTTTTGTATCCGCTTTGCTCGTTGTTGAATCATTCCCACAGCCCGCAATCAAAAGTAAAGCGCAAAACATCACCATCAATTTCCAAACATTTTTCTTCATCCTTTTTCTCCTTTTTTCTATAAGTTTTTAGCAAAATAAAAACCCAGATAAATCAAAAAATAGCCCAAAAGCCATCTTCCAATCCATCTAGGTTATGCCCAAAATAGGTAACATTCCTGAGTGAGGTATTTGTTTATAGGATAATTTTAGCATAGATAGTAAGCGTTTACAAGTTTGCGCAATTTCTGTCGATGTATGGTAGCGTAAAAAGTACTGGAGACCGACAGATTTGCGGGATGCATTGGGAGAGAATGAGAGTGGGGGGTATTTGGGTTTTGAATAGTAATTTTAGGAAGTTAAAAAGCTGATTTTGAGATAGGTCGACAAAAATAGCCTTGTGAGGTAAGATGGGAGTAGGGATGAAAATGGACGG # Right flank : CCCTTCAATCATGCTAGTAAAGCTGCAGAAATAATTATTTCGAATTATAAATTCATCTAGCAACAAAAACATAGATAGTAGCATTATCATAAATTTCCCAGACAATAAAAAATTAAAATCAAATTCTTTACTAGTTTTAAGGTATAAATCTTTTTAACAAAAAGTGAAAAATTTCAATTAATCATATAGCAAATGTTAAGTAAAACACTAGTATTTCCAGTGTTTTTTTTTCGCTAGCATTCACTCTTTTTTTGTGTTAAATTAAACACAAGCAACAGATGGGGGTGACAAAAATGAGACTAAAAATAAATTGTGATTTCGAATCCAACATAATACCGAAAGACTACAGAGGTAAAATAGTCAGTTTATTCAAAACAGGAATTGAGAAATCTAGTCCAGAAAGATATGGAGATTTATTTGGTAGTAATAAGCGGAAAAATTACACTTTTTCGATATACTTGCCTAAACCTAAAAATAATAAAAATGAAATTTATCTTGAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 3 73792-73440 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJUD01000004.1 Listeria seeligeri strain BCW_4759 PROKKA_contig000004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 73791 29 100.0 36 ............................. TGCGTAGATTCATCTCAAGCGCGTATCTGATTTTAT 73726 29 100.0 34 ............................. AAAACCAGCTAGTGAGAACTACGCAAGCAACACG 73663 29 100.0 36 ............................. ATCTTCAAATAGAACTAGTTTCATTTTAAGTTCTCC 73598 29 100.0 35 ............................. TTAAACATGATTCGTAAAACGGCGATTGTTAACGC 73534 29 100.0 37 ............................. CCAGGACTAGGTGCAACTGTTGCCATTGCAACGTTTG 73468 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ===================================== ================== 6 29 100.0 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : CGCAACAACTTCAGCCGATGTCCTGCTAGAAAAAGGCGCTGTAGAAGTTATTGCCTGCGCAACCCATTCGGTTATGGCCGGAAGCGCAACTGAACGCTTACAAAACTCAAAAATCAAAGAAGTTATCACCTCTGATTCCATTGATCTACCAGAAGATAAACAATTTGATAAACTAACAACCATCTCCATCGGCCGCATCCTAGGCCGCGCAATCGAAGGCGTTCAAGAAAACCGCTCATTGCATCCGTTGTTTTAAGAAAATCTATAAGCAGAGACTCAAAATTAGGTCTCTGCTTTTTTGTGCGTTAACATCTGTCGACCGTTAGTAGTGTAGAAAACAAGGGGGATCGACAGAACATTGAATTCCTTTGTGGGAGAATAGGTTTGGTGGGTTTTGAGTTATGAAATTAAAGTTTGGTGCTTTGATTTTAAGAGGTTTTTTGGAGGTCGACAAAAATAGGCGCTTGAGGTAAGATTGGAGTAAGAGGAAAAGTGAACGG # Right flank : TTGAGTTTAAGGTTACGTTCCTTTTTACTAGTTGCGATAACACCCATTCCCCGTCATAATAGAAAAAAATACTAGGAGATGATGCTTTGATTATTGACGTTCTACAACATGTGCCGCACGAAGGACCAGGACTTATTGCGAAATGGGCGAAAGAAAATCAACATCAATTGAAAGTTCATAGTTTATTTAATGAAAAAGATCAAGTTCCAACTGATTCGGAATTTTTAATCATTCTAGGAGGACCAATGGGAGTGAGTGATACCGCTGAATTTCCATGGTTAGAAGAAGAACGAAACTTGATAAAACAACTAATAGAGCAAAACAAACCAGTTTTTGGTGTATGTCTTGGAGCGCAACAAATTGCGACAGCGCTAGGAAGTACTATTTCGATGAATAGTGAAAAAGAAGTAGGCTGGTTCCCAGTTAACAGAATCTCCACTGAACTATCATTTTTTCCAGAGCGACTAGATGTTTTTCACTGGCATCAAGAGACTTTTTCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 313034-314390 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJUD01000007.1 Listeria seeligeri strain BCW_4759 PROKKA_contig000007, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 313034 36 100.0 30 .................................... AAGGTGATTGTCGTGACTACATCGCGACGG 313100 36 100.0 30 .................................... CATTTTGTGCTTTTGTGTCCATCTTATACC 313166 36 100.0 30 .................................... ATTACGCGCTAACATTACAACACCACATTC 313232 36 100.0 30 .................................... GTATTCTTTGAAATTATTATAAGGTTTGTT 313298 36 100.0 30 .................................... AAAATGATATCCTTATTAAGTCCAGCCTCA 313364 36 100.0 30 .................................... TTTATCGTGACGGATTCTTATGAACTCTTT 313430 36 100.0 30 .................................... GAATGACTTTGCTTTTACTACACGAGATTA 313496 36 100.0 30 .................................... ATATTAAGTATCTGTATCAACATCGCAGAA 313562 36 100.0 30 .................................... ACCCCTTTTAACGTTAACTGGGTGTACCCC 313628 36 100.0 30 .................................... AATCAACATGCTTTCTATTTCTAAGTCGCT 313694 36 100.0 30 .................................... AGTTTATTGATGATTACGATAAAAGTGATT 313760 36 100.0 30 .................................... CTCTCGTTTCGCCAGAGCTAGGGTCTTTCA 313826 36 100.0 31 .................................... CAAAAGAATTAACTGATGTATTTGAAAAACA 313893 36 100.0 30 .................................... TTCATTGACGAAATTAACTAACCCACCACT 313959 36 100.0 30 .................................... CCAATTATTCGAGGGAGAGATGATGGAATT 314025 36 100.0 30 .................................... AACGATTTAAATCTATAGATTGTCCTGTGA 314091 36 100.0 30 .................................... CTTCATAAAAGACTTCACTAGTATCGCTAG 314157 36 100.0 30 .................................... AAAGGGGATCTTTCATTGGATAGAAGTTCA 314223 36 100.0 30 .................................... ATAGAGTAGGGAGCTATTTAGAAGTATCCG 314289 36 97.2 30 .........T.......................... TTCATAGATAGCTTATAAATCACTTTTTCG 314355 36 97.2 0 .....................A.............. | ========== ====== ====== ====== ==================================== =============================== ================== 21 36 99.7 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : TGATAAGCTGACTGCAACAATTAGCGAGTTGATAGGTTACGAGCTATTGGAGCACGAGCTGGATTTAGAAGAAGACGAAATTACAGTCATTGAATTATTCAAAGCTTTAGGGATAAAAATAGAAACAAAAAGCGACACCATCTTTGAAAAAATAATTGAAATTGTACAAGTTTATAAATATTTATCAAAAAAGAAGCTGTTAGTTTTTATTAATGTATGTGCTTATCTTACAAAGGAAGAATTGTTAGAACTAAAGCGGTATATTTCTTTAAATCAAGTGAAAGTTTTATTTATTGAACCTAGAAAAATAAAGGAAGTTTCACAAATAGTTTTAGATTTAGATTATTTTTTACATGTGGAAAATGACGTTTAAGAATCGAATGCTCTTTGAAAATAAAATATATTTTATTTAACCCATTAAAACAGCATTCAAAATTGAAATCTTGCTATGGATGAGTAGTGCGATTACGAAATCTTAGAGGATAAAAAAATCCTACGAG # Right flank : CAGAGAGGGTGAACTACAAAAGTAATATCCTTTACATCTGTTTTTTTCTATATATAGTGGTAAAACTAGTTGGTTTATGTTATAAATTTTCTACAAAAAGATCACCTCGTTAGTTTGTTGTTTTGTCACTTTTATTCTAACAAAGGTGGTCTTTTTTGTGTATTAAAAAATGGATTTGATTATTCCTCTCAAAAAGAAATTCTCAAATCCATTTTTCTACTTACTAGGATTTATGTCCCACCCTCTTTTTCTATACGGACTGCTGTCTAAAACAAAACACCGAAGCAATTATCAATAACACAATCGCGGGAAAAGCTAAAAGTGCAGTAATGGCAAAACATGCGCACCCAATTATGCCTAAAATATGACCAATAATAGAAATCCCAGCTTTTTTAGATTTAACTAAACCGATAATATGAATAATAAGTCCAATAGCGGCCATTACGTAAAAGAAAGCACCGACTCCGCTTGTTTGTGATCCATCTCCGCCTGAGAAACTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //