Array 1 925660-925992 **** Predicted by CRISPRDetect 2.4 ***
>NZ_LS483455.1 Salmonella enterica subsp. enterica serovar Carmel strain NCTC9872 chromosome 1, complete sequence Array_Orientation: Forward
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ============================= ================================ ==================
925660 29 100.0 32 ............................. CCCAGAAAAGTTTGTTTAGGCAATCAAGCCCC
925721 29 100.0 32 ............................. CGTTACAGCCAGTTCATGGAAAGTTTCAGGCA
925782 29 100.0 32 ............................. ATCCCAAAACATCTTTCCCTGGTTCCTCTCAG
925843 29 96.6 32 ......G...................... GGGATCGCGTTGGCGGTCGCATCCGTTGCCGT
925904 29 93.1 32 .....A......T................ TACCAACAATTCAGCGTTACGCCAACGGTAAC
925965 28 82.8 0 ...............A.AA....-.G... |
========== ====== ====== ====== ============================= ================================ ==================
6 29 95.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATCGCCTGATGCATTACTAATCCTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACGTTTAGT
# Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGGTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG
# Questionable array : NO Score: 6.03
# Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37
# Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37
# Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41
# AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: F [5.65,0 Confidence: HIGH]
# Array family : I-E [Matched known repeat from this family],
//
Array 2 934820-935765 **** Predicted by CRISPRDetect 2.4 ***
>NZ_LS483455.1 Salmonella enterica subsp. enterica serovar Carmel strain NCTC9872 chromosome 1, complete sequence Array_Orientation: Forward
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ============================= ================================= ==================
934820 29 100.0 32 ............................. ATGATGAGCGCATCGTTCCGGGGACGGTGGAA
934881 29 100.0 32 ............................. CGTGGCCTCGTTATTAACTGGCAGCAATTCTA
934942 29 100.0 32 ............................. CCAAAAGCGGAGGCACCACCTCGTAAAACGAC
935003 29 100.0 32 ............................. GGATCGGCAACTTCTCCACCATCCTGGTAAAC
935064 29 100.0 32 ............................. CATCCCAAAAGGCCTGATTCAGGCCTTTATTG
935125 29 100.0 32 ............................. GCGAACGTCTGCGGTTATTTCGGGCATGAAAT
935186 29 100.0 32 ............................. GCTGCGGTCCTCCCGACTGTGCATTTTTTTGC
935247 29 100.0 32 ............................. TGCAACCACACGAGCTCAAAAAATGCGTATGA
935308 29 100.0 32 ............................. TGCAACCACACGAGCTCAAAAAATGCGTATGA
935369 29 100.0 33 ............................. GGTACTGCCAGTTGACGGGGTTTATCGTTAAGC
935431 29 100.0 32 ............................. GCTGCGGAATGTCCTTTACCAGCGCCACAAGG
935492 29 100.0 32 ............................. CCGTTTAATCTCTTCATCTGTGGCAATTTTTA
935553 29 100.0 32 ............................. ATGTCGGAGCGCTGTCAGTTAATGGAGGGAGG
935614 29 96.6 32 .A........................... GTGAGCTCGGTTTTAATTTCGTCGCTAAGGTG
935675 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGTCTGAAAA
935736 29 93.1 0 A...........T................ | A [935762]
========== ====== ====== ====== ============================= ================================= ==================
16 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Left flank : TTAATACCTTACCACGTCGTTCAGAAACGGGGGCATTGTTACCAAACCAGTTTAACGTTTTATTTTCAATAGCAATACGATCGATAAAAGCAAAACGGCTGTGGAAAAGCAAAAGATCCTGCTCTGGAACGATTCCCTCGTGTAGCAACTGCTGGTAAGTATCCAGCGCATCATCAACCGTGTTGCGGATCCAACAAATGCACTGTCCGGTTGCCACAACGCGATAAATAATGTCCAGTGCTTCCTGGCGCTGCTGTATCCAATTAACGGCTACAGTCCTTTGAACTTCGGGACGTGTGGCCAGTGGTTGCTCTAACAGACCGGAGGAAGTGAGGTGGCTTAACCATGGATAACCCGCGTTATCGCTACCACCAGCGCTCATAAATCCCGCGCCATCGCTAAACGCATTAAGTAATTTTTCCCGTAAAGCGGCGGGAAGAGTGGCGCTCAGAATAATAGCGCTACCGCCCTGGGCGGCATGGAAGCGCAATAAACCTTCC
# Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCTATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG
# Questionable array : NO Score: 6.23
# Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37
# Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37
# Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41
# AT richness analysis in flanks prediction: NA [41.7-48.3]%AT Score: 0/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: F [5.65,0 Confidence: HIGH]
# Array family : I-E [Matched known repeat from this family],
//