Array 1 134196-134773 **** Predicted by CRISPRDetect 2.4 ***
>NZ_CAJHQK010000011.1 Klebsiella pneumoniae isolate Kp5166, whole genome shotgun sequence Array_Orientation: Forward
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ============================ ================================= ==================
134196 28 100.0 33 ............................ TGCCTCCAATGCAATCACCGGCCTGCTAACCGG
134257 28 100.0 33 ............................ CGTGTCGAAGCGCACCTCGTAGCCGAGCCAGTC
134318 28 100.0 33 ............................ CGTCATCAGCGCCTTGTTCCAGCGGCGACCACC
134379 28 100.0 33 ............................ TCCAGTCGTCGTAGTCCTCGGTAATGTCCTCGA
134440 28 100.0 33 ............................ TATCGTGCAGAGTCACAACCTGACGGGATTATC
134501 28 100.0 33 ............................ TCGTGCATGGTGAGGATTCTACAGTCGCACCAT
134562 28 100.0 33 ............................ TACCTCCCGGCGTCCGCGCCAGGGCGATCACGT
134623 28 100.0 33 ............................ CCTGCAGCTGGCCGTCGAGCTGACGGATGCCGG C [134632]
134685 28 92.9 33 ............T.T............. TTCATCACGTGTGAGCGGATTTGGCTCTATCCT
134746 28 89.3 0 ............T......A.......T |
========== ====== ====== ====== ============================ ================================= ==================
10 28 98.2 33 GTCTTCCCCACACGCGTGGGGGTGTTTC
# Left flank : TTAGCGTTGGCGAGCCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGACTCGACGGCGCAGCGCAGGATAACAGCCTCCAGCTACCGCTGCTGACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGCGCCTACGGAACGGCGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTGTGGATTTTTCCGCAGCGGTAACTTCGCGAAGCCACGGAAGGCAAGCGCCAGGATGACGCGCTACGTTCTGGGGATGACAAAAGCGTTTTACCCCCGGCTGCGGGCCGGGCAGGCCAGTAGGGTAGACCGGTCCAGGTCAGCAGCAAATCGACGGTGGTTATATGGTGACATACTTTTTCGTTTGATGAATGTTGATGCTGATGCGGAAACCCTGCGGAGTGCAATTGTTGTAAATCTGGCGTTTTAATACGCCGCTAAACACAATATGCTGGT
# Right flank : TCGCCTTTCAAGTGACGACAAGTCACGTCTGTGCGCATTTCTCAGATGAAAGGGGATTCCTGACGTAGAGGCATCAATGCCGTGACATAGTTATCCTTAATGTACATCAATGTCTTCGAAATTTCGTTTGGCCAGCACAGTCTCATATGTTTTTTGTATGATTTTACTTATAAATATTCGTGAACTATGTTTGTCCTATACTTTCTTTAGGGGCATCTAAATCATTCGAGTTTATTACTCGTCTGGAGATATTGTTCTTCATATTAATTATTTATAGCTTTTTATATTATTATTTTTGGCTTTTATCTTTAATTCAGTGTGTTGTGGATATTTTTGATTTTATAAAAAGTTATTTATAAGTTTCCCGGTTTTTAGTATTAATAAAGGGCACATGTTTTTTAAGGAAAAATTCCATGAGGCGCTTGATCAGGGTTTCGCTACAAAATCAACATGCCATCGCGGCGATAAGTTTTGAAAACTGTCCAGCGAAAACCCGGATG
# Questionable array : NO Score: 6.17
# Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTCTTCCCCACACGCGTGGGGGTGTTTC
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37
# Reference repeat match prediction: F [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37
# Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41
# AT richness analysis in flanks prediction: NA [56.7-50.0]%AT Score: 0/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: F [5.28,0.37 Confidence: HIGH]
# Array family : I-E [Matched known repeat from this family],
//
Array 2 143527-144232 **** Predicted by CRISPRDetect 2.4 ***
>NZ_CAJHQK010000011.1 Klebsiella pneumoniae isolate Kp5166, whole genome shotgun sequence Array_Orientation: Forward
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ============================ ========================================= ==================
143527 28 100.0 33 ............................ TTCGCATGGCCCGATCTCGGCGCCGCCGGTGGC
143588 28 100.0 33 ............................ TGACGGACATACCGCGCTGCCCGGTCTGCGGCA
143649 28 100.0 33 ............................ CCGTTGGCGGGACAGTTTTTTCACTGACAGGTA
143710 28 100.0 33 ............................ TGGCACTGTCACTGTCGAGACGATATCGACTGC
143771 28 100.0 33 ............................ TAGATACGGCTGCATTTGGCGTGAAGGGGTGCA
143832 28 96.4 33 .....................A...... TACACTGAGCATGTACGCCGTGGATGCAGTAGC
143893 28 100.0 33 ............................ TGTCGTCACATAGTGCTCTATCCACTGGTTAGC
143954 28 100.0 33 ............................ TAGTTCGCGAGGAGACGCCCCAAGGTTCACCGC
144015 28 100.0 33 ............................ CCTCATCTAGTAAAAGCGGTTTTGTTATGAATG
144076 28 100.0 33 ............................ TCCGCCGTTTAATCGCGGTGATGATATCCGGCA
144137 28 100.0 41 ............................ TGGAATCCACGACGCGCCGTACCAGCGCTGGCATTCGTTCT
144206 27 85.7 0 ......A...T.T....-.......... |
========== ====== ====== ====== ============================ ========================================= ==================
12 28 98.5 34 GTCTTCCCCACGCACGTGGGGGTGTTTC
# Left flank : TTTACAAAGAACGGCTCTGTATTGATTTGGCATTTTCACTCTCGAGGGAAATGGCGGGCCGCTACGATAAACACAAAGTCTCTGAGGCATTCAGAAAGCGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCGGCCGATATCAATGAGCTGATGGGAGGGAAAGGTGCTCGTCGTACTGGCAAATGATCTGCCGCCAGCGGTGCGTGGACGAATGAAGCTGTGGTTTGTCGAACCACGGCCAAATGTTTTTGTCTCAGGCGTCAAAGATTCGGTCGCGCAAACCGTTGTTGATTACCTGTTGCAGTACACGCCTGTGGAATCAGGCCTGATGCTGTTTCGCAGTATTCCTCAACCGCCTGGTTATGAAATTCGCTACAAGGGTGAGGTCAGAAAGCCGATTATTGATCTCAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATACGTGGATATTGTGGTTAAACTCTCGCTCTTTCACAATATGTTGGT
# Right flank : CTTGTGAGGGGTCTACCAGCATTGGCGTACTGGAGTCTTCCCTACACATGTGGGACTTAGCAATAAGCGGAATACTCGTATTAGAATAAATATTTTATAGCCAGCGAAACTAAAATAATTTTTAGCTAATGAAACTGTCGTTTGGTAGAGGTAGGAATATTTTATTGCGATAGAGAAGGGAACTGTTTAAAGCAATAACGGCGAATGATTCTTATAAAATGAAGGATAGGGAATTCATATGTTTCGACTTTACCAGTCACATGATTTAATACGCCAATTAAATCCTGAAGACTTTCAATATATTTTGACACCAGCAGGTTCGCTAAGAGAAGCGTGTATAAATTACGACCTCTCCTGTGAGGCGAATGGTCACAGCCTCGCTTTTGGCCTACCGAAGGAAATATACAACTCATCTCCACATAAAAGGCCATATGAACGAAGGCAACGTAGCTATGCAGATCCTATCTATGATGAGGTAGAGCACAGGCTACAAATTGGCT
# Questionable array : NO Score: 6.19
# Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: R [2,9] Score: 0.37/0.37
# Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37
# Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41
# AT richness analysis in flanks prediction: F [63.3-46.7]%AT Score: 0.27/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: F [5.55,0.37 Confidence: HIGH]
# Array family : I-E [Matched known repeat from this family],
//