Array 1 134196-134773 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CAJHQK010000011.1 Klebsiella pneumoniae isolate Kp5166, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence             	Spacer_Sequence                  	Insertion/Deletion
==========	======	======	======	============================	=================================	==================
    134196	    28	 100.0	    33	............................	TGCCTCCAATGCAATCACCGGCCTGCTAACCGG	
    134257	    28	 100.0	    33	............................	CGTGTCGAAGCGCACCTCGTAGCCGAGCCAGTC	
    134318	    28	 100.0	    33	............................	CGTCATCAGCGCCTTGTTCCAGCGGCGACCACC	
    134379	    28	 100.0	    33	............................	TCCAGTCGTCGTAGTCCTCGGTAATGTCCTCGA	
    134440	    28	 100.0	    33	............................	TATCGTGCAGAGTCACAACCTGACGGGATTATC	
    134501	    28	 100.0	    33	............................	TCGTGCATGGTGAGGATTCTACAGTCGCACCAT	
    134562	    28	 100.0	    33	............................	TACCTCCCGGCGTCCGCGCCAGGGCGATCACGT	
    134623	    28	 100.0	    33	............................	CCTGCAGCTGGCCGTCGAGCTGACGGATGCCGG	C [134632]
    134685	    28	  92.9	    33	............T.T.............	TTCATCACGTGTGAGCGGATTTGGCTCTATCCT	
    134746	    28	  89.3	     0	............T......A.......T	|                                	
==========	======	======	======	============================	=================================	==================
        10	    28	  98.2	    33	GTCTTCCCCACACGCGTGGGGGTGTTTC	                                 	       

# Left flank :   TTAGCGTTGGCGAGCCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGACTCGACGGCGCAGCGCAGGATAACAGCCTCCAGCTACCGCTGCTGACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGCGCCTACGGAACGGCGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTGTGGATTTTTCCGCAGCGGTAACTTCGCGAAGCCACGGAAGGCAAGCGCCAGGATGACGCGCTACGTTCTGGGGATGACAAAAGCGTTTTACCCCCGGCTGCGGGCCGGGCAGGCCAGTAGGGTAGACCGGTCCAGGTCAGCAGCAAATCGACGGTGGTTATATGGTGACATACTTTTTCGTTTGATGAATGTTGATGCTGATGCGGAAACCCTGCGGAGTGCAATTGTTGTAAATCTGGCGTTTTAATACGCCGCTAAACACAATATGCTGGT
# Right flank :  TCGCCTTTCAAGTGACGACAAGTCACGTCTGTGCGCATTTCTCAGATGAAAGGGGATTCCTGACGTAGAGGCATCAATGCCGTGACATAGTTATCCTTAATGTACATCAATGTCTTCGAAATTTCGTTTGGCCAGCACAGTCTCATATGTTTTTTGTATGATTTTACTTATAAATATTCGTGAACTATGTTTGTCCTATACTTTCTTTAGGGGCATCTAAATCATTCGAGTTTATTACTCGTCTGGAGATATTGTTCTTCATATTAATTATTTATAGCTTTTTATATTATTATTTTTGGCTTTTATCTTTAATTCAGTGTGTTGTGGATATTTTTGATTTTATAAAAAGTTATTTATAAGTTTCCCGGTTTTTAGTATTAATAAAGGGCACATGTTTTTTAAGGAAAAATTCCATGAGGCGCTTGATCAGGGTTTCGCTACAAAATCAACATGCCATCGCGGCGATAAGTTTTGAAAACTGTCCAGCGAAAACCCGGATG

# Questionable array : NO	 Score: 6.17
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCTTCCCCACACGCGTGGGGGTGTTTC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [2,8] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-11.50,-10.80] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-9] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [56.7-50.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.28,0.37   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
//


Array 2 143527-144232 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CAJHQK010000011.1 Klebsiella pneumoniae isolate Kp5166, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence             	Spacer_Sequence                          	Insertion/Deletion
==========	======	======	======	============================	=========================================	==================
    143527	    28	 100.0	    33	............................	TTCGCATGGCCCGATCTCGGCGCCGCCGGTGGC        	
    143588	    28	 100.0	    33	............................	TGACGGACATACCGCGCTGCCCGGTCTGCGGCA        	
    143649	    28	 100.0	    33	............................	CCGTTGGCGGGACAGTTTTTTCACTGACAGGTA        	
    143710	    28	 100.0	    33	............................	TGGCACTGTCACTGTCGAGACGATATCGACTGC        	
    143771	    28	 100.0	    33	............................	TAGATACGGCTGCATTTGGCGTGAAGGGGTGCA        	
    143832	    28	  96.4	    33	.....................A......	TACACTGAGCATGTACGCCGTGGATGCAGTAGC        	
    143893	    28	 100.0	    33	............................	TGTCGTCACATAGTGCTCTATCCACTGGTTAGC        	
    143954	    28	 100.0	    33	............................	TAGTTCGCGAGGAGACGCCCCAAGGTTCACCGC        	
    144015	    28	 100.0	    33	............................	CCTCATCTAGTAAAAGCGGTTTTGTTATGAATG        	
    144076	    28	 100.0	    33	............................	TCCGCCGTTTAATCGCGGTGATGATATCCGGCA        	
    144137	    28	 100.0	    41	............................	TGGAATCCACGACGCGCCGTACCAGCGCTGGCATTCGTTCT	
    144206	    27	  85.7	     0	......A...T.T....-..........	|                                        	
==========	======	======	======	============================	=========================================	==================
        12	    28	  98.5	    34	GTCTTCCCCACGCACGTGGGGGTGTTTC	                                         	       

# Left flank :   TTTACAAAGAACGGCTCTGTATTGATTTGGCATTTTCACTCTCGAGGGAAATGGCGGGCCGCTACGATAAACACAAAGTCTCTGAGGCATTCAGAAAGCGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCGGCCGATATCAATGAGCTGATGGGAGGGAAAGGTGCTCGTCGTACTGGCAAATGATCTGCCGCCAGCGGTGCGTGGACGAATGAAGCTGTGGTTTGTCGAACCACGGCCAAATGTTTTTGTCTCAGGCGTCAAAGATTCGGTCGCGCAAACCGTTGTTGATTACCTGTTGCAGTACACGCCTGTGGAATCAGGCCTGATGCTGTTTCGCAGTATTCCTCAACCGCCTGGTTATGAAATTCGCTACAAGGGTGAGGTCAGAAAGCCGATTATTGATCTCAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATACGTGGATATTGTGGTTAAACTCTCGCTCTTTCACAATATGTTGGT
# Right flank :  CTTGTGAGGGGTCTACCAGCATTGGCGTACTGGAGTCTTCCCTACACATGTGGGACTTAGCAATAAGCGGAATACTCGTATTAGAATAAATATTTTATAGCCAGCGAAACTAAAATAATTTTTAGCTAATGAAACTGTCGTTTGGTAGAGGTAGGAATATTTTATTGCGATAGAGAAGGGAACTGTTTAAAGCAATAACGGCGAATGATTCTTATAAAATGAAGGATAGGGAATTCATATGTTTCGACTTTACCAGTCACATGATTTAATACGCCAATTAAATCCTGAAGACTTTCAATATATTTTGACACCAGCAGGTTCGCTAAGAGAAGCGTGTATAAATTACGACCTCTCCTGTGAGGCGAATGGTCACAGCCTCGCTTTTGGCCTACCGAAGGAAATATACAACTCATCTCCACATAAAAGGCCATATGAACGAAGGCAACGTAGCTATGCAGATCCTATCTATGATGAGGTAGAGCACAGGCTACAAATTGGCT

# Questionable array : NO	 Score: 6.19
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCTTCCCCACGCACGTGGGGGTGTTTC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [2,9] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-11.50,-10.80] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [1-5] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [63.3-46.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.55,0.37   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
//