Array 1 396150-397556 **** Predicted by CRISPRDetect 2.4 *** >NZ_RWGX01000003.1 Flavobacterium columnare strain BGFS27 000003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================================================== ================== 396150 36 88.9 82 ..GA.TA............................. CCGTTTCAAAACATTAGTCATCGTAAGTTGGTTTACAAACACCAAGTTAATATTTATTATAGGTGTGTTTGTGAATCTCCCT AA [396157] 396270 36 91.7 29 C.G...A............................. AAGATAGAATTAAGATACGATTTAACAAC C [396274] 396336 36 100.0 29 .................................... AATAGAACCTACTTTCATTTCAACACGTT 396401 36 100.0 30 .................................... TTAATTCAATTAATTGTTTTAGCCCTTGGT 396467 36 100.0 29 .................................... CGACAAAAATAAATGTGGAAAAAACTGAT 396532 36 100.0 30 .................................... AAACCTAATAAATTATAGCCTTTCTTCAGG 396598 36 100.0 31 .................................... TATGACAGTTGATGCCTTAATAGAAAGCAAG 396665 36 100.0 30 .................................... GCATTGATTGTCCACCCTTAAGATAGGTAA 396731 36 100.0 30 .................................... AATTGAAATAAATCCAAGAGGCAAGCACGT 396797 36 100.0 30 .................................... CTTTGTTTTCTGTTTTTACAATTTCAGTAC 396863 36 100.0 30 .................................... CCTGTGTGATAACAAGTTTTCCACCGATAG 396929 36 100.0 30 .................................... AGATTATCCTAATATCATCAAGCAAAGCGT 396995 36 100.0 30 .................................... CAAATTCATCTGTTTCTTCATCGTAAGATT 397061 36 100.0 29 .................................... TGCGGAGTGGTTTTTTCTTTTTTTGGCGC 397126 36 100.0 30 .................................... TTTATAAAAATTAAATTAAACACTAATCGT 397192 36 100.0 30 .................................... GTTAATTATTTCGAGACGGTAGGCTACAAA 397258 36 100.0 30 .................................... TCGTTAACCACTAATTCACCATCAAAGGGT 397324 36 100.0 30 .................................... AAAAGCGATGATTTCATACTCTCATCAATA 397390 36 100.0 30 .................................... GCTCGTAGTCTTTATCGCAAAAAGTGATTA 397456 36 100.0 29 .................................... TCTTTCTATTTCGTCTACAAACTCCGTTA 397521 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================================================================== ================== 21 36 99.1 32 GTTGTGGTTTGATTAAAGATTAGAAAACACGATATT # Left flank : GCTTGCCGAATTTAAAAAACGATTAAATGTATAATTATGATTTAAGCGAGCAAGCTAAAATAGATTTGTTGCGTATTTATGAATATAGAATTGGTCAGTTTGGTCTAGACCAAGCTGATAAATATTTTGACATGATGCACGATTGTTTTAATAAAATTGCTAAAAATCCATATTTATTCCCTTTGGCATCAAATATTAAGTCAAATTATTACAAATGTGTTTGCGGAATTGACATCATCTATTATAAAGTTGTTACAAATGGAGTTATCATTACAACAATAGTCGGAAGGCAGGATTTTGAAATTCAAAATTTAGTTCATTGACATACACTATCAAATCGCAAATAACCAAACTTCATACAGATTGGTTTGATTAAAGATTAGAAACCGAGGGACGAGTTTCGGCGAAGTCAAAACACGATATTATTTGGTTAAAAATTACGATTGTAATTTCAGTTGTGGTTTACAAACACCAAGTCAATATTTGTTATAGGTGTGTTT # Right flank : TAGTTGATGTTTTATCTTCTAATTATCAAATGGTTAAGTTTTGATATCGTTAAAAAAAATGCTTCTTTTTTGGGGTGCTATGCCAAAATTGAAGCATTTTTTTATTCCTAAAATAATTCAAGTTGAGTGGGTTGAGGTCCCGAAGGAATTTCTACTTTTCCCCAGAAATTTTGTATATTCCCAAATTGCTTGTCTGTAATTCGTAATATACTTACTTTTCCTGAAGGAGGTAGAAGTTTTTGTACACGTTTTTCATGTACATCAGCACTTTCGCTACTCGCGCAATGTCGTATATACACCGAGTATTGCATCATACTGAATCCATCTTTCAAAAGTTGGTTCCGAAAACCAGAAGCATTTTTTCGGTCTTTTTTAGTATCAGTAGGCAAATCAAAAAATACAAACAACCACATGATTCGATACCCGTTTAAATCCATAATTTTGGGTATTTTATCTTTTTGCGCTCCCCAGCAAAACATTGCTGCAAGGAACTAGCCGTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGGTTTGATTAAAGATTAGAAAACACGATATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTGTGGTTTGATTAAAGATTAGAAAACACGATATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.00,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.68 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 775720-777073 **** Predicted by CRISPRDetect 2.4 *** >NZ_RWGX01000004.1 Flavobacterium columnare strain BGFS27 000004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================================================================================================================== ================== 775720 36 100.0 30 .................................... TCTTTTGCTTTTCCTGTTAATTTAAACATA 775786 36 100.0 30 .................................... GCTCATGTTTTTCTATTTTATAAGTAGGTA 775852 36 100.0 30 .................................... TTTGTATCTGTGTAGTATATTGTAAATTTT 775918 36 100.0 29 .................................... GCTTCAATAGGTGCTACAAATTGAGCATT 775983 36 100.0 29 .................................... TATAGGATATGAAATACCATTATTGAAAT 776048 36 100.0 29 .................................... GTAATGAAGTTTTCTATTTCTTCATCTAA 776113 36 100.0 28 .................................... TGCAACTGAAATTGTAAAATTAAACCCA 776177 36 100.0 146 .................................... ATTTTCTTTTTGTTCGTCAAAAATTGTGTTGTTGGGAAAGCCCTTATTTTACTCACGCTCTTTTCTATTGTTTTTTATAGGAGTTCGTGAATGATTATTTGAAGGGTATCTACAACTCTTATTCTTTCTAGTTCGTGCTGTTGCAC 776359 36 97.2 29 ..........T......................... AAATCCGTTATCAATAATTGTAGGCATTG 776424 36 100.0 30 .................................... TTTTCGGGGTCTTTTGTTTTTTCAATGCTT 776490 36 77.8 57 ..........................G.CGAG.GTT AAGAAATAGTCCAGTGGACTATTTTAGCGATGTAGCCAGGAGGCGCGTGGGCATTTA GA [776514] 776585 36 72.2 30 AAACC...TT.AA..T.................... TACGGCGATTTCAATTCTCCATAGGTTGCC 776651 36 77.8 57 ..........................G.CGAG.GTT AAGAAATAGTCCAGTGGACTATTTTAGCGATGTAGCCAGGAGGCGCGTGGGCGTTTA GA [776675] 776746 36 72.2 30 AAACC...TT.AT..T.................... TTGAAAAACTTAGTAGTATTTGTTCCCACT 776812 34 83.3 56 .........................--.GGG....G CGTTAAGAAATAGTCCAGTGGACTATTTTAGCGATGTAGCCAGGAGGCGCGTGGGC 776902 36 80.6 30 A..T.A...ATT...T.................... GCTTTAAAGTCTTTTATAAATACAACTATG CCG,AA [776910,776918] 776973 36 100.0 28 .................................... AGGCTAACAATTGAAGTATTTCAATTTG 777037 36 77.8 0 ..........................GGA.G.GCGT | A [777062] ========== ====== ====== ====== ==================================== ================================================================================================================================================== ================== 18 36 91.0 41 GTTGGGAAAGCCCTTATTTTGAAGGGTATCTACAAC # Left flank : TTTTAATTAAATATTATGATTATAATACTGAAAAGTTGAAGGAAAAAATAAAAAATATGGATGAGGATGAAAAAGCCAAAATAGTTAATACTAAAGAGAATTATAACAAAATAACCAATGTTTTAATTAAAAAAGCACTTGTTTTAATTATCATTCGCAACAAAATGGCGCACAATCAATATCCACCTAAATTTATTTACGATTTAGCTACTAGTTTTCAAAATGATAAAAGGAATAAAGATTGGGAAAAATTTGTACACCAAAAAGAAAGCGAATACTTTGCGACCTATTTCAACCGAGTTTTTGAAACCATAACAACAGAATTATGGGAAAACAAAAAGGAAAAAGCTAAAGAAATAGTTTAAAAGCTATTGCTCTTTGATATTTTGAGAAGGATTTAAAAAAAGAGTAGCTTTGGGGTATAAAGTTCAGAAAAAGTTCATTTTTTTGTATAAAAAATTGTAGTAATCCCTTACTACGAGAGGCTTACCAACACTTAG # Right flank : TTAAGGAAGCTGTCCAAAAAGTACTAAATCAACATCCAGTTTGTCACTCCTACGTAGAAGGAGTCTCATAATCAATAGCATGTAATTTTTTCCTTTGGTCAAAATCACAAGATTGCGAACTTTTTGGACAGTCTCTAGCAAAATAGCGAGCAGGCGTTTGAAACCAAATTTAATTATTTAAAAAATAAATAAACCATAATTCTTATTCATAGAAATACCTCTTTTTTAAAAATAACAAAAACAAACCTATAACACAATCAAGTAAATATGATCCATATACTGCCTCCTAAACTTCCTTATAATTTAACCTCAACACCTAAGATATTTTTGTAAATTTGAATCATCAAACCATTTGGAATCATGAAGGCTAAATACATCAATCCGTTTACCGACTTTGGATTTAAAAAAATATTTGGGGAAGAAGCCAGCAAAAATTTGCTTATAGACTTCCTTAACACACTATTGCCTGAACACGACCAAATTAAAGAACTTTCTTTTAA # Questionable array : NO Score: 4.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.55, 5:0, 6:0.25, 7:-0.77, 8:1, 9:0.94, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGGGAAAGCCCTTATTTTGAAGGGTATCTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-57] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //