Array 1 419742-420746 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJSLL010000001.1 Escherichia coli isolate Fecal samples, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 419742 29 100.0 32 ............................. TCCGTAATAGCCGAACAAATCACCGAGTTTGA 419803 29 100.0 32 ............................. GCTGTTTGTAAATTTAGAATTGCTGACTGAGC 419864 29 100.0 32 ............................. CCGCCCATTGAATTAGCGAGGCGCATAATAGT 419925 29 100.0 32 ............................. TCCGAGCGCGTAATAGCGCGCGCCCGGAAACA 419986 29 100.0 32 ............................. CGTTGACCGCCATCAAAAATGGTACAACCTCG 420047 29 100.0 32 ............................. CGACCGCGTGGGCGTCTACGTGGGGGATCAGA 420108 29 100.0 32 ............................. TAAATTAAAAATCGCCCGCACCGACTACCGAT 420169 29 100.0 32 ............................. ACTCCGATAGCCTGCTCAGAATTAAGGCGCAG 420230 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 420291 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 420352 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 420413 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 420474 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 420535 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 420596 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 420657 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 420718 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 436245-437312 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJSLL010000001.1 Escherichia coli isolate Fecal samples, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 436245 29 100.0 32 ............................. CGGTCCGCATCGTCCTGATTGTTCTTACACTG 436306 29 100.0 32 ............................. GCTATTTGCAATTTGCTCAGCTGAATCACACA 436367 29 100.0 32 ............................. CCGCACACCAGGGCGTCTCATCGTCTTTAATT 436428 29 100.0 32 ............................. GGGCAAGCGACAGTCTGAACGACGCGGCGGGG 436489 29 100.0 32 ............................. TTGTGAATTTTTGCACTACATCAGGTGTGGTC 436550 29 100.0 32 ............................. TCGCCCGAAAAACAGCTTGAATCTTATATCGC 436611 29 100.0 32 ............................. TGGCAGATCGATTTTACCGCCAGAATGACAGG 436672 29 100.0 32 ............................. ATTAAGGCGGACGAGGAAAAGGCAGACGTTAC 436733 29 100.0 32 ............................. GTCCATGGCCTGACGAAGCTCGTAATATTTTG 436794 29 100.0 32 ............................. CGACATAAAAACGTCCGGAGGCGCGTACTACC 436855 29 100.0 32 ............................. ATCAGGTAATCGAGACACCTGTCAGCACTCTC 436916 29 96.6 32 ............................C CCAGCGCCAGACGGGAACACAATTTTAAAGCC 436977 29 100.0 32 ............................. TTGTCGGGGATCTGTTCAAACTGACTCATTAG 437038 29 100.0 34 ............................. GGGGCGCATTAACAGAGAGAAAAACGCATAGGCC 437101 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 437162 29 100.0 32 ............................. TCGCTATTGCCGGTAGTGTCGCTGATAGACTC 437223 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 437284 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================== ================== 18 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //