Array 1 1525234-1522948 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP018190.1 Granulibacter bethesdensis strain NIH5.1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1525233 29 100.0 32 ............................. ATGGGGTTCCAGTCACGCGCACTTTCGCCATC 1525172 29 100.0 32 ............................. GCGGCTGATGTCAGGATGGCTGATATTTTTCC 1525111 29 96.6 32 ............................A TGCAGGCGATTGATCAGCACTCGGTTGTGGTC 1525050 29 100.0 32 ............................. CGCCGCTGATCATATATCGCAGCGCGGTCCAG 1524989 29 100.0 32 ............................. ATCGCTCGATGAACCGCCGTTCTTGGCTTCGA 1524928 29 100.0 32 ............................. TCTGCGCAGCCACCCGGAACCGTATTCTGAAA 1524867 29 100.0 32 ............................. GTGCCGAGGCAGGTCGTGAGACCGGTTACGGT 1524806 29 100.0 32 ............................. CCACCGCGCGCCAGATCGAGCAGCTGCGCATT 1524745 29 100.0 32 ............................. GTGGAAATAGGCCGTATGCGGGTAGGAAAACG 1524684 29 100.0 32 ............................. GCCAGCGAGGCACATGCGCGCGGCTTCGCGGT 1524623 29 100.0 32 ............................. GCCGCCACAATCGGTGCTGGCAGCAGCTCAGG 1524562 29 96.6 32 ............................T CTCTCTCCTGCTGATCTGGGTTCGATGCTACG 1524501 29 100.0 32 ............................. ATGCTGCTCCTGGATAGCGGATGGCCGCCTCG 1524440 29 100.0 32 ............................. GTAGAAATGCGATCTACATTCATCGGCTCAAG 1524379 29 100.0 32 ............................. AAAAATTCGAATTCTTCCTCGTCGCAGCAGGA 1524318 29 100.0 32 ............................. CGAAAACCCATGACGGGATTTTCGCAAAAATA 1524257 29 100.0 32 ............................. CCCGCGTTGCGCTCCTGCGCCATGCGCTGGCA 1524196 29 100.0 32 ............................. TCGCTGACTAATGGGAAAAAAAATAGAGTCTC 1524135 29 100.0 32 ............................. ACCTCTGTATCTAAGAAAGAAAGGGGAGCGCC 1524074 29 100.0 32 ............................. GTCCAGCACACTCAGCGCCAGCGCCCTGTATC 1524013 29 100.0 32 ............................. GTGCGGCCGTGATAAAAGCGCGCGTCGCGAGT 1523952 29 100.0 32 ............................. GCATCTTCTGTCCTGGATGATCGGTCGGCGTT 1523891 29 100.0 32 ............................. ACGCTCCGGCGTTATTGGTGATCCCACCGTTC 1523830 29 100.0 32 ............................. CCGCTACAGGGCGCTTCCCACCGAGCATTTTT 1523769 29 100.0 32 ............................. CGCCCATCTGAACATTTTACGAATGCGTGGAG 1523708 29 100.0 32 ............................. CAGTCGGTGACTGCTGATACAGCGACTGCGAT 1523647 29 100.0 32 ............................. GGCTGGTCGGTCCATGAAATTATTTGGCAAAT 1523586 29 100.0 32 ............................. ATTTCCGCCATTTATTTGCCTTAGTCGGCGCT 1523525 29 100.0 32 ............................. CCGATGCGATCATGCGACGTGTCAGCGATCAG 1523464 29 100.0 32 ............................. TCACTTAAATAGGGAAAATGCTGAGAGGTTGA 1523403 29 100.0 32 ............................. GATTTCGAGCCGCTCTACGCTGAACCCAGCGT 1523342 29 100.0 32 ............................. GCGCTGGGCGAGATACTGGTGTTGCGTGCGCC 1523281 29 100.0 32 ............................. ATCATCGCCCTCGATACCGGCGTTACCACAGG 1523220 29 100.0 32 ............................. GAATCACGAGGGAGCACAATATGCACACTGAC 1523159 29 100.0 32 ............................. CTGCCGATAATCTGTTCCACGCGGGGATCGTT 1523098 29 100.0 32 ............................. ATAACGCCAAACCCGGGCTCCCTTGAGCAACT 1523037 29 100.0 32 ............................. GCTGATATTTGGCTATTCTCAGGAGTATCGCC 1522976 29 96.6 0 ........................G.... | ========== ====== ====== ====== ============================= ================================ ================== 38 29 99.7 32 GTGTTCCCCGCCTGCGCGGGGATGAACCG # Left flank : TCGGACGGGACTTCTTGGACGTATTATTCCCGCGATTGAGGACGTTCTTTCTGCTGCGGACATTCCACGTCCCGAGCCCCCACCCGAGGCTGCTCTACCCGCTTTTGACGAAGAAAAGTCTGGCGATGAGGGCCATCGCGGATGATGGTTGTGGTTGTCACCAATGCGCCGCCACGCCTGCGTGGCAGACTTGCTGCATGGCTGGTTGAAGTGAGGGCCGGTGTCTATGTCGGCAACTATTCGGCTCGGACGCGTGAAATGATCTGGCGCCAGGTGACGGAAGGTCTGGAAACAGGCGACGCCGTCATGGTGTGGAAGGCCCCAACGGATCAGGGATATGACTTCCTCACTTTTGGTCGCAACCGCCGCATGCCCATTGATTTTGATGGACTGAAGCTCGTAACTTTTCTTCCCGAAAAGTCGGCCTAAAAACCTCTTTTTCTGTCGGTAAGATCTTTGACAATGTAAAAAATATTTTGAATCAATTACTTATGCGAAGA # Right flank : ATTTGCCTGTATGGGCTACTTGGCGCGTTCATCCTTTCATCCGGCTGATGCCATTGTTGGCTGACGCCCTTCATGATCAGGTTCTCGATCGTCGCATGGCCACCAGCAACGATATCCGCGCCACGTTCCTTAACTACTTCGCCCGTAACGGGCATGAGGTGGTCGACAGTTCTCCGCTTGTGCCGCGTAACGACCCCACACTGCTGTTCGTCAACAGCGGTATGGTGCAGTTCAAGAACGTGTTCACAGGCCAGGAAAGGCGGCCTTACAGCAGGGCCACGACCTCCCAGAAATGCGTCCGCGCCGGGGGGAAGCATAACGACCTCGATAATGTCGGCTACACCGCCCGGCATCATACTTTCTTTGAAATGCTGGGTAATTTCTCCTTTGGCGATTACTTCAAGGAACAGGCGATCACCCATGCCTGGAACGTCGTTACGCGCGAGTTCGGTCTGCCGGCCGAAAAGCTGCTGGTCACGGTCTATCAGGATGATGACGAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCCTGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCCTGCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-2] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.77 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1534573-1534179 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP018190.1 Granulibacter bethesdensis strain NIH5.1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1534572 28 100.0 33 ............................ CAGCGCGGTGGCTTTTGTGACCGCAGCGCCCGC 1534511 28 100.0 33 ............................ TGCGACTGCCATACTGCACCGCTGTTGCTCGAG 1534450 28 100.0 33 ............................ AGCGTCCCGCGCGCTCCCTATAAACTATAGCAA 1534389 28 100.0 33 ............................ CCCCGGCTGCACGAGCAAAATTTGTCGCGTCAA 1534328 28 100.0 33 ............................ CGAGTTGCGCCCGGTTTCCATCGTCTCGGCCGC 1534267 28 100.0 33 ............................ TGGATCTGTTGATGAAGCGCGTGGGATAGCTGC 1534206 28 96.4 0 ....................A....... | ========== ====== ====== ====== ============================ ================================= ================== 7 28 99.5 33 GGTTCCCCCGCGTGCGCGGGGATAGTCC # Left flank : TTGATGCCGCAGCGTGCCCGCTGGACCGGGCTGACGTTGAACTGGTTGAGGTGGCGAGGGCGGTCATGCGGCAGCATTATCGCCCATTATGGCATACGGTGGCAGCTGCTTTGCGGGATGCCAATGGCCGTATATGGACCGGCCTTCATCTTGGCGCGACGGTGGGGCGTTTGCAGATTTGCGCAGAAGCGATTGCACTGGGCCGGGCCAAGCTGGAAGGGGCGGCTGACATCGAAACGGTGGTTGCCGTCCGTCATCCCAAACAGGATGAACCCGATCAGGATATTGCCGTTGTCTCCCCTTGCGGTGCATGCCGGGAGATGTTTGCGGATTTTGCCCCTTCCACCATGGTCATTGTTACGGGGGAGCAGGGGTTGATCAAGGTGCCGCTTGCTTTGCTTCTCCCCCTTCCTTACCGGCGCTGAAAAAGCCGGCTTGCATTTTTCTCAAAATGTGGAAAATAGGGATTGTTCTTTGAAATCAATAATATCAGCCCTAGA # Right flank : TTTTAATCGAGAGCATGTGGGCGCAGATGGCCACCATGAAGCGGCCGATGCGGACAGAACTGTAAAAGACTTACTGCAAGACGCTGCTGAACACCTGTTCCGGCATCCCTATACGAAAATCGAGTCTGTTCAGTCCGACTTGGGCATAGCGCGTCAGACGGTGGGTAAATATGCCAATCAGCTTTCGGAGAAAGGTCTACTTTCCAAGCACCGTTCAGAGCGTAGCAACTATTATATCAACGCACCTTTGGTCCGCCTCTTCCTGAGAAGTGTAGGGTGGTGCATGCTCCAGGATTGCCGAAGCACCTTTTAATCCTGTGTCTTTTATATTGCCGTAATTTTTACCTATCCATGAGATTAAACATCTCCGGACAGTTACGTTGATGGAGCTGCGTAATGCAGTGGAAAAACTGGCCGGGTAAAAGCTCGGTCACTCCGGATGGTCCTGAACATCCGGCAGCCTTTCATATGCTTGATGTTGCTGCGGTGGCGGAAAGGCT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTCCCCCGCGTGCGCGGGGATAGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 3 1835949-1832443 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP018190.1 Granulibacter bethesdensis strain NIH5.1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 1835948 28 100.0 33 ............................ CCACAAAATTGCCCCCGGGATTTTTGCGATACC 1835887 28 100.0 33 ............................ TTGAGACTGCGTGCCCTGCGGTAATTGCATACA 1835826 28 100.0 33 ............................ CTCCCCCGCGGGCACCGGCGTTGCCCGCACCGC 1835765 28 100.0 33 ............................ GTCATCGACGACAGATTTACATCGCCCCCAGAG 1835704 28 100.0 33 ............................ TTTCGCAAACGGCTGTCGGCGCGTTTGCGCCTG 1835643 28 100.0 33 ............................ CTGGTTGAAAATTTCGGATAGTGTCATTGTTTT 1835582 28 100.0 33 ............................ CAGTCAGATTTCAGCCCTGGCGATGGAGTGGGT 1835521 28 100.0 33 ............................ TTTTGTAGACAGAAACACGAAGAGAGCCGACTG 1835460 28 100.0 33 ............................ TTCGTCGAAATTTTTTAGCCACTGGTCTCGCAA 1835399 28 100.0 33 ............................ TTGTTCGGGCAGTGATTTTCCGCGTTTTTCGGC 1835338 28 100.0 33 ............................ CAAGAGGGAATTTGCGAAATGCGAAACGAAAAA 1835277 28 100.0 33 ............................ GCTGGCCTGAGTAACGCCATCGGCCCGCGTTAT 1835216 28 100.0 33 ............................ CGGTTCCTGCAAAACCGCGTCGCGCGCGGCAGC 1835155 28 100.0 33 ............................ CGTCAGCGGAGGGCCGATTTCCATATCTCGCTG 1835094 28 100.0 33 ............................ CTCGGTTGACCCTCGGGGATCGTAAAAAACAGA 1835033 28 100.0 33 ............................ CTGGCTACGTACACGCCAATCCGTGTCCGATTT 1834972 28 100.0 33 ............................ TTGCCGTTAGCGCCGTTCGTCTGGCCGTTAGCG 1834911 28 100.0 33 ............................ GCTCCGTCACCTCCGCATTAGGGGCTTCATCCG 1834850 28 100.0 33 ............................ CGAGCTTTCTGACCTGCCGCGCACTTAGGAGTG 1834789 28 100.0 33 ............................ GTCATGATAGTTGATTTCCCGTTCCATATGCAG 1834728 28 100.0 33 ............................ TCCGGCCGGTCCGGCCGAGTATCGTGCGATCGG 1834667 28 100.0 33 ............................ CGACCTGTATTGCGACGTTGCGCTCCAATACAG 1834606 28 100.0 34 ............................ TTTGACCGACCGTTTCCGAGCGCCCAAGGCAGCG 1834544 28 100.0 33 ............................ TTGTGCCCCACGTCCCTTGGCTTTTTTTCTGCT 1834483 28 100.0 33 ............................ CTGCTGGCGTAACGGGCACTCAGACAGAAACGC 1834422 28 100.0 33 ............................ CGACGATAGCTCCGATACGTACGCACCGTTCCA 1834361 28 100.0 33 ............................ TGTGTGCGTCCAACACGGCGGAATTGGCCGAAC 1834300 28 100.0 33 ............................ TGATTGATGAATAAAATAGACGGGGGCCTAATC 1834239 28 100.0 33 ............................ CTGGCAAACCGGGCAGCCAAGGCAGTGGTGAGC 1834178 28 100.0 33 ............................ CAGCCGTTCGGCAGTTTGCACCCGACAGTAACG 1834117 28 100.0 33 ............................ CGGGCCGAGCTGCCCTGGCGTTCGGACGACAGA 1834056 28 100.0 33 ............................ CGCGGTGGTGAACGCCAGCCTGAATCCACTCGT 1833995 28 100.0 33 ............................ CTGCGCGGTCACCATGGCGCGGCACAGATCGTA 1833934 28 100.0 33 ............................ GCGATCCGGGCTGCGGAGCCCAAGGAGAAGATG 1833873 28 100.0 33 ............................ CCGATATCGCCGGATGGGCCGGGTGCATCATCC 1833812 28 100.0 33 ............................ GTGGGCAGCTATGCTAGCATCCATGGTCAGCCC 1833751 28 100.0 33 ............................ TCGGCACGACCTGCTGATCGACCCCGCCATCCT 1833690 28 100.0 33 ............................ CCGTAGCGCGTGAGACTACCAGCGATACAGAGC 1833629 28 100.0 33 ............................ CCACCCACGCTTTTCGAGCAAAAATAGCCCGGG 1833568 28 100.0 33 ............................ CTTCGTCTTGCGCACTCCACTCCCACCCCGGGA 1833507 28 100.0 33 ............................ TCATCGATCCGACCCGCCTTGTCGTGATCTACG 1833446 28 100.0 33 ............................ CGGTCTCATGCAGACGGTGCCGGATGCGCCTGA 1833385 28 100.0 33 ............................ CAATGTCGTCCCGAATGCAAAAATGGTGGACGA 1833324 28 100.0 33 ............................ CCACGGGATCAAAAGAATAACTTTCGCCTAAAT 1833263 28 100.0 33 ............................ CTGTACTGGGAGCCGATCAGGGCCGATCAACTG 1833202 28 100.0 33 ............................ CATTGTTCGCAGAGATGAAGATGGTCGGCTACA 1833141 28 100.0 33 ............................ TCCCCGTGCCGTTCGCCATCGACTGCGCCAGCA 1833080 28 100.0 33 ............................ CGATATCTGAAAAGCGGGGCCGCTGATTTGCGG 1833019 28 100.0 33 ............................ CGACTGGTCGCCGGGAGAGGTTGGGCACGCATT 1832958 28 100.0 33 ............................ CTCGCGCGGTCGGCACCATCCGCGCGCGCTGGC 1832897 28 100.0 33 ............................ CGAATCTCTGATAGGTTTCGTCTGTCTCAAGAT 1832836 28 100.0 33 ............................ TGTATAGGACTGCGAGCCATCAATCAGGAATGA 1832775 28 100.0 33 ............................ TGCCCCCTCACTAGGGGTTGCCGCACTGTCGGC 1832714 28 100.0 33 ............................ TTGGTGTCATGCAGGACGGCGATATCGGTCCCA 1832653 28 100.0 33 ............................ CCTAAGGCGCGCCCGCGAGGAAGGGGAGGGGTG 1832592 28 100.0 33 ............................ CGTGCGCGGCAAGGCGTTCAACTAGGGGACACC 1832531 28 100.0 33 ............................ TCCGTGCCGTTGAAATGCACCGCCGGAAAGCGG 1832470 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 58 28 100.0 33 GGTTCCTCCGCGTGCGCGGAGATAGACC # Left flank : ATTGCTGCGTCCGGCCTGATGTTTGAAGAAAAATCCCTTTTCGGTCCGGCTTTCAAGCCATCTGGGTGCTCTCGGTAATGAAAGTGGAAAGGTCTTTCCGCACAAAATCGATTTTGATGTCAGGAGGGTGGAGCAGATTATTTAATATATCCTTGCGCAGCCTGCGCTTCATGCAGTTCGTCCGGGCTTTGTTCCATCAATGATTGCCAAGCATGTTCTGGATGTTCCGCCAACGGGTGAGCGTATAGAGAGCCAATCTTCTCATGCCCCTTTTTAATCCTGCACCCGTTGCAGAAGACGATCAGACGCGTCTTTAATTCTGCATGAGGAAGTGGGAGAGGAGCAGGGTTGGTATAGCTCCTAACCTGATTCTGTTCTGATTGTGATGCTCCGAAGGACATTATCGATGCCGGTGGAGTACTGCTGCTTCAGAGAAGTTAATTTCTGAAACATTGTGTTCTTTGAGATTGTCAATAAGTATCAATGTGTTGTAGGCAAGA # Right flank : TCACTCATCATAATGGATCGCTACTCTCCCGCCGGGGGTGTGCAAACCGCCCCCCGGCCTGATACACCCGGGTGCATGGATGCACGCCCGCTCGATCAGGTAACGGATCAGTCGCCACCCCCACACGCTCCGCCAAAGCGGAGAGGTAAAGGGGCGCGGAAGATCAACGTGGAGTTGGAGCCGACCGCCCTCGCCATGATGGGGCGGCTGTGGCGGGAGCATATCGCGCATCACCGTGTTCGTATGCTGGTGGTGATCCTGCTGACGGCGCTGATGGCGGGCAGCACGGCGCTGTATCCGGTGGTGATCCAGCATGCGATCGACCTGTTCAATGCCCGTGACCGGCGGATTTTGTACCAGATTCCGGTGCTGGTGCTGATCGTCACCGCCATCAAGGGCGCGGCGATGTATGGGCAGACGGTCTCCATGCAGCAACTGGTGCTGATCGTCATCAGGGAGTTGCAGGAGCGTATGTTCAGCCACCTCGCCCATGCCGATCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTCCTCCGCGTGCGCGGAGATAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.00,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [36.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 4 1918110-1920577 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP018190.1 Granulibacter bethesdensis strain NIH5.1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1918110 28 100.0 33 ............................ AAATCCCCCGAGGCGGAAAGGCGACGCCTGAGC 1918171 28 100.0 33 ............................ TTCTTCAGTAACACCAAACACGTATCTGATTGG 1918232 28 100.0 33 ............................ GTTAAGCCGAAGGATGTCGAAAAAATGCCATCT 1918293 28 100.0 33 ............................ CGTGTCGTCGTCCCCTCGCGCAGGTTCGGGTGC 1918354 28 100.0 33 ............................ TTCTGTTTTATCTTGATAGGACGTGTGAAACAT 1918415 28 100.0 33 ............................ CCCGGGGGCATTCAGGAACCCCCAAACGTTCGC 1918476 28 100.0 33 ............................ TCTCGGCCAGTTTTTTTACGCCAAACGGATGCA 1918537 28 100.0 33 ............................ TGCATCGAGCGTAGCGAGGTTGGTCGTTACGTT 1918598 28 100.0 33 ............................ CGCGCGTCGGCGCATCCCGTGCACACCCTCAGA 1918659 28 100.0 33 ............................ TTTTTTTGTTGACACCTGTCTCGCGGGGCGCGT 1918720 28 100.0 33 ............................ CCCACTGTCGCCTACCTGAGGGTCTATAATCAC 1918781 28 100.0 33 ............................ CCCTCCCCTATAGTTTTTTCGTAAAAAACCAGA 1918842 28 100.0 33 ............................ CTCCCGACACGTAGGCCACGCGGTCAACGCCCT 1918903 28 100.0 33 ............................ TCAGCAGGGCGCGATAGCCGCGGCATCCCGCGC 1918964 28 100.0 33 ............................ CGCGGCGGATTGTTTGACGGACGTAACCGCACC 1919025 28 100.0 33 ............................ TGGCGGCACTCCGCTGGCTTCGAAAAACTCTAG 1919086 28 100.0 33 ............................ TTCCGGGAGACGATATCGGAGTTACGCGTTCGC 1919147 28 100.0 33 ............................ GTATTCCGGAACAGGCTTTCGCGCTCAAAAAGA 1919208 28 100.0 33 ............................ TGACGCGCGCGGGTTTTCGTCTCGTATACAATG 1919269 28 100.0 33 ............................ CTGCGTTTTTGTAGTCTGCAACACGAAATTTCG 1919330 28 100.0 33 ............................ GAGTTTCATCGGCTTCAGCGGCCCGCATTTCGC 1919391 28 100.0 33 ............................ GTGGCTGCCACTTCGGCTGACCGCACATTGAGC 1919452 28 100.0 33 ............................ CCCCACACGTTCGCGCCCGCCACGCCGTAGACA 1919513 28 100.0 33 ............................ TCGCTGCGCTCATAGTGAGCGACAGCGCCTGTT 1919574 28 100.0 33 ............................ CGTCCGAACAGACGCTGCGTCAAACGCCAGTGT 1919635 28 100.0 33 ............................ CTGGATATCCTCGGCCGAGATCGCATGCTCTTC 1919696 28 100.0 33 ............................ ATTCCCGCTGTGGTGGACGCCGTTGTTTCTCTG 1919757 28 100.0 33 ............................ GATCGCCATTCAATGGCCGCCAGAAATAGGCCC 1919818 28 100.0 33 ............................ CCATGCAGAATGATGCACCTATGGAGGCCCTCG 1919879 28 100.0 33 ............................ TTACCGCCCCTGTTCCAGTACTGTTCTGTATCG 1919940 28 100.0 33 ............................ TTTATCAAAATCGGTGCGGAGCTTCGGAAGCGC 1920001 28 100.0 33 ............................ CCGGTTCCCCCGGATTTTTGCCATTTTTGCATG 1920062 28 100.0 33 ............................ GCCAGAGAAAAATCTCTGTCTTTAAAAAGAGCA 1920123 28 100.0 33 ............................ CCCTCGTAAAATTTTTTGTTGACGGGGGGTGAT 1920184 28 100.0 33 ............................ TGGTCTTCAGCTGGCTGGGGCAGTGCTACGATC 1920245 28 100.0 33 ............................ TTTTTCAATCGCGCCCGACCTGCCCCTGTAAAG 1920306 28 100.0 33 ............................ CTGCGTCTGCTCACTCTGCGCGTTCTGGCCCAA 1920367 28 100.0 33 ............................ CACCACGCGCGTTTTGCCGCCCTTGCCGAACAC 1920428 28 100.0 33 ............................ CGACCCGAATATAGTTCTCACTCAGTTACATCA 1920489 28 100.0 33 ............................ CTGATCGCTGGAAAGTCAGCGCCGCACCGTCGA 1920550 28 92.9 0 ..........................TT | ========== ====== ====== ====== ============================ ================================= ================== 41 28 99.8 33 GGTTCCTCCGCGTGCGCGGAGATAGACC # Left flank : GGGTCATGAAAATATCGAACGTCTCACCCGACGCCAGACTGGACGCGTTCTGGCAGAACGCTCCGTCATTCCAAAAATGATCGAGCGACTCAAACAACTTTTCGAAAAAGAAACGGAGGCCATCCCATTTCTCGAGGATGATGAATGATGCCAGCCACTCTGGTCATTACAAGAGATGTGGAAGCACGCTATCGCGGCTATCTGACCTCGATCATGCTGGAGCTTTCTGCTGGCGTTTATCTGTCTCCCCAACTATCCTCGGCGGTGCGTGAGCGCACCTGGGCGGTGCTGTCGGAATGGCATTCCGAACTGCGCCGTGGTGCTATCGTGCTGGCATGGCCCGATGCCAAATCCCCCGGAGGCATGGCAATCCGCACCCTTGGCGACGCTCCCAAGGAGATTGTCGATGCCGACGGGGTGCTGCTCGTTCGGAAAAGTTAATTTTAGAAACATATCGTTCTTTAATATTGTCAATAAGTATCAATGTGTTATAGGTAAGA # Right flank : TCTCGGCAATGTCTGCGAGATGGCGGAGAGGGTGGGATTCGAACCCACGGTACCCTTTAGGGGCACAACGGTTTTCGAGACCGTCACCTTCGGCCACTCGGTCACCTCTCCGTTCGGGGTCTCTTAGAGCAGGCGAAAGCCCGCGCCAAGAGGCTGTAGCAGAAAGATGCCCCCTTACCTTCCGGCCCGGTTCCATCCAGCCCGAGCCCGAATCGAAGCCACGGCAAGCGAGAAGCCCCTATACCCGCTGAGCAAACACCTCCTTCGGGCTGCCGGCACGGCAGATATTTCATGAAAATGGGAGCCATGCCGCAAGGAATGTTTGACTTGTGGCGTATGACCGGTATAACCCGCGCCTCTCGGCCGCCGTGCCTCCCGCTTGTCGGGGTGTTCGGAGGCCGCTCGGCGTTGACGGGATGGCTCCGTCGTCGCGGAGCCAGCATTTGGGACCAGAAGCGATGTTCGCAGTTATCCGCACTGGCGGAAAGCAATACCGTGTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTCCTCCGCGTGCGCGGAGATAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.60,-10.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA //