Array 1 62498-62309 **** Predicted by CRISPRDetect 2.4 *** >NZ_FODV01000015.1 Halogranum amylolyticum strain CGMCC 1.10121, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ================================== ================== 62497 23 100.0 34 ....................... CTGTGTGCGCAGACTTGGCTCTATTCGCTCGCTG 62440 23 100.0 29 ....................... TTCTCTGTGAGAGAGGCGGCAGTCGGGGT 62388 23 91.3 34 ..A................G... CACTCTCCATGGACTTGGCTCCATTCGACTGCTG 62331 23 91.3 0 .A.................G... | ========== ====== ====== ====== ======================= ================================== ================== 4 23 95.7 33 TGGACATACGAAATGTACTCTCT # Left flank : CCCGTTCCCAATCCACGTTTTGGGAACGAACTTGCATGGTCGGGGAGAAGATCGTTGACGAGGCTCCGAACAACCATGAACAACGACTGCCCGTTGCAGTTCTTTTGATGGACGTGGAGGTCGTCGATGTCGTCGTTTTCTGTGACCTTCGCCTGGAGCGCGTCCATCATGTACTTCGTGACTGCCGTCTTCCCAAGGCCGGCTTTCCCGTAGAGCATGATGTTCTCGGGTTGTCGGCCGTTCAACACATGACGAAGCGAGAAGCGGTAGTCGTCGATTTCTTCGTCCCGCTCAAGAATCACCTCGGGTTGGTAATCCTCGGTGAGAACGTGCTGGTTGAGAAGAATATTGTCCTCCATATCCTCGAACGGGTCCGTAGACATGCAATTGGTACACACACTCCTTGGGTAATACTTAAAACCATGGTTCGTTAGATTCGTATGTTCGACTCAACTTTGCTAACATGCTGTCTTTGGGGTTCTCGGCGTGTCTATTGTGAG # Right flank : GTGACCAGCGCTACCAAAGTGGGGACGACGCTCTCGAACGGTTTCTCGACCGCCGGCAATCGCGGTACGGTCTCGCGACGTCGTCCGTCGAGACTCTCCGAACACGGCTGAACCTGTACGTCCGTGCCTATCGAGAGGCAAACGATACAGACGACCTCCTCACGCCGATTCAACGTGACGGGGATGCTCCGGCCTACGAAGCCGTTGACGCGTGCTATGCAGCGTTCGACTGGTTGAACGAAGACGCAGACCGTTCCTACAGCGCCCAGACCCTCCAGCGGGTGCGGCGCATCGTCGACGCCTGGTATCAACATCTGGTCGGACGACGCGTCGCCGCGATGAATCCGGCAAGTGGTCTCTACGACGAGTTCAAGTGGGAACTCGACGAGTCGTCGACGCCAGCACTCTCTGCAGCCCACATTCGGAAGTTGATGCAGGTCACAACGACGCCGCGAGAGCAGCTGTTGGTGGTCGCACTCGCTGGGTGGGGACTCCGCGCA # Questionable array : NO Score: 2.65 # Score Detail : 1:0, 2:0, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGGACATACGAAATGTACTCTCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.87%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.70,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 1 28707-28479 **** Predicted by CRISPRDetect 2.4 *** >NZ_FODV01000013.1 Halogranum amylolyticum strain CGMCC 1.10121, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 28706 30 100.0 37 .............................. CGACAATACTCCCGAGACGACCAGGCGATCCTCATCC 28639 30 100.0 36 .............................. TTCGAGTTCGTCCCACGCTTCGGCGAACGCCGACTT 28573 30 90.0 34 .A..............T............T GACCGCAGAGCGGTCTCAGGCAAAGCAAGATTCA 28509 29 86.7 0 ................-...AAA....... | T,C [28497,28505] ========== ====== ====== ====== ============================== ===================================== ================== 4 30 94.2 36 GTTTCAGACGAACCCTCGTGGGGTTGAAGC # Left flank : GCCCACGCATGAGCGCACGCGAGGAGTTGGAGATGCACCTCTCTCAAGCGCTGTCGCGAACGGAGGATACGGAGGTGCAAGCCCATCTGTATGCGGCCTTGGAGTCGACCGAGGAGTTACCGCCGACGCCGCTTGTCGAGTGTCCCGTCTGTGGGACAGTAGGGTTGGCGGAGCGGATCGAAAGGCACGATTGTCAAGTCAGATAGCTTGGCATAGCTCATCTCCCTTCAAATTCTTATCACCCCCTTGCTTGATCCTGCTACACAACAGTGGTGAGTGAGCAGATTGAACCAAATTCTGCGACGTCTTTACAACCTCGGAACGTCCCACTGTCCAGTTGCGTATTTTGCGTATATGCAGCTAAACCGGTTCCAGTATAGTCAGATGCCACCTCCTCCGAATTCCGTCGACCCCCCGCAGTGAGAGGGTAATTGGAGGTCGACGGAAAGTCTGATGTATATCCGGTTAATACAGGCCTCTAAGTGGTCGAATTGGCCATG # Right flank : CTCAATGATCTGCGGAACCGCGGACCCGCGGAGTGGTTACCCAAACATCGTTGAAACGCGGTAGCGACGGTCGCGTAACACCCTCACGGCCGACGACACGCCGAACGTCGAGTGCTGGCTGCCGAAGAAGCTCAAGCGGCGGCAAGCAGCACCCCTACCGATCACCCGAGAGACACCGTCTCACATGTCGGCGAAATCCCAATGGCAGCCGCTTCCTCAAACCCGTATGCGAATCGCACTCCGCCAGCACTCCTGACACCCTGCGCATCGCAGTCTGGCTGCGGCCACGCGAACGTTTCAGGACGCCTTCCGTCGATTGGTACGATGATCCGCGCTGGGGTGCCGACGAATGGCTCCGTTGCTTCTCTCGCTGTGTTACTCTCGAGCCGATACAGGTGATCAACGAGGATTGTTCCGGCTGCTGTGTCCACCTGATAGTGGATGTTGTGCGTGCGATCCGAATAGTTGAACACCTCAACCTCGTGGGCGAGCTGTCGCGA # Questionable array : NO Score: 5.57 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTCGTGGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.10,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 19476-19666 **** Predicted by CRISPRDetect 2.4 *** >NZ_FODV01000027.1 Halogranum amylolyticum strain CGMCC 1.10121, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ================================= ================== 19476 24 100.0 31 ........................ TCTTGCCACTTCGTTATTTCTGAAAAAGCGG 19531 24 100.0 33 ........................ CTCTGATACCTCTCTCAGAGCCGAGACAAGTGG 19588 24 100.0 31 ........................ TCTTGCCACTTCGTTATTTCTGAAAAAAGGG 19643 24 91.7 0 .G.G.................... | ========== ====== ====== ====== ======================== ================================= ================== 4 24 97.9 32 GATTAGCTCATATTGCAAACGGGG # Left flank : CGAACGGTTACCACCAACCACGTTGAGGAAGCAAAAAACCAGGTTGAGAAGAACTATGTCGTTGATGTCATCGAAAATGTCTCCTTCCAGAAGCAGGTTTCACTCTTTGCTGCCGCCGTTGTAAACAAATACGGTCAAGAACAACTCAGCCGTTCCGAATTTCTCAGCGATCGGTCGGCACCTGCCCCAGTCGCGCACACGCTTTATAAGTGGTTTACTGACTACCAGAATATTGAACGGCGGTCGAAACACAGCTATTTGCGGTGGATGCGGGAGTTAGGTACCTACGAGGTTATCGAAGTTAATCGAAAGGGTCGAGGTAACGAGCGAGGGGTGTTTGGGGAGTACATATTCCACAATCTTCCCGCTGATGTCATGGTTGAGACGCTCGTCGACAAGGACGACCGATTCCGCGAAGCATTGGACGATGAGGAACTCATTCGAAGTGTTGTCCGAAACAATCTCAAGGATTTTTGAACTGTGTACTCGTTTCCACTTAT # Right flank : GCTCACTTTGCAAATGGCGCCGTTTTGTTAGTGGCTGATAACACCGAGTGAGCACAAAACACCACTCTCACTAGCTATAAATCTCGGATTTTATTGAGATCTCACATCTGTATGATAGAATAGTCTCATTTCCGTATCACAGTCACGGGACGTGTACTCGTCGCCTCGCGTGGATTAGCCCTGAGTACACGAGTGCGGGCATACAGAACGTGCGAACCGTCATAAGAAGCAGTTCAAGTGTCACTCGTATTCCCATCAAGACCACTCTGACCGTGGTGCAAGCGTCAATATCATCGTGAAAGGCATCAAGAAACCCGATTGGAATGTTCGTGTTCTCAACAGCCTTCCCGTTGTTCGGGAGGTGCGACGGCAAAGCATCGGGGGTTGTGGACGCTCGACCGTGACCTACCCGACCGCACGAGGCTATCAGGCCGACGGTCGGATGGGAGTATCTGATTAAACCACGGGAAGCCTCGGGCTTGCCCTTGAGGCTGTTCACG # Questionable array : NO Score: 2.56 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAGCTCATATTGCAAACGGGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.90,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 61148-61343 **** Predicted by CRISPRDetect 2.4 *** >NZ_FODV01000017.1 Halogranum amylolyticum strain CGMCC 1.10121, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ====================================== ================== 61148 23 100.0 34 ....................... GTCCTTACGAGAAGCGGGTCGGTCGCAGCCCCCC 61205 23 100.0 32 ....................... TCACGCATAAAGCACGGGAGGCCCCCTACTCC 61260 23 100.0 38 ....................... GCTCGTCAAAACGAAGGGGCAACACGCGTAGGCCACCA 61321 23 91.3 0 .........G............A | ========== ====== ====== ====== ======================= ====================================== ================== 4 23 97.8 35 CACCCCACCATGTCCGCATAATC # Left flank : GTCTGTCATTGTCGCTGTACTGAATAATTCTGACTCTGGTATATATTCGCTCTTGTTGTTAACGATTCTTCATATTAAGTTTGGATTTGCAAGACAGACGTAAGTGGCGCTGACGATCGAGGAAACTCTGCTCTTGACGCGGTACGGGCGGTAGCACAAATAGCATGTACTGACATTTGAAACTGTGGCTACCTGAACAGCAGGCGAGATGGAGACAGTATCAAATCGAAGTACCACGGCCCGGCTGACGACGAATGAGCAACGAGTGTCGATCCCGAGAGACGGTAGGAAATCAACGGGGAATCGAGGATGAATCCCACACCACGTTGCGGTTGTAACTCTCGGGTTAACGGAGGTTATGAGGTTTTCCCGGCAGAATCACGATACGTGTACGCTAGGTCTGCGTGTCACTGGATACGGTGGCCAACAGGACGGTCGAGTGTTACTTCGACTGTGGGCAGTCACTGTCGAGCCAGACTCGAGCAGCCGGCGACGAGAGA # Right flank : ATCGCCGCAAGCACGCCTAGAAGCCCAACCTACACAACGTCTCAACTAGAATTTCTACTTCACGGCAATAGATTATTTCTATTACGGATTTGTTTGAATGGCCACCTACTTCAAACTTCGCCTATTCAAGGTCTCATTCCGGTTCCAGATGAACCGGGGGTCATTCGTGTCGGGGATTATGCGGACACGGTGGGGGGAGGGGAGGTATATAAAGAACCGTGTATGCGGACACAGTGGACACTCCGGACACGGGGGTTTTATTGCCATCCATACTATCGGCTCAAGCAACATGTCTGATGACGGCGCCGGATCGAGGAACCCGTACGCGATCCTCGACGAGAATCCCTACAGCAGGGCCGTCGAGATCTTCGCTGACGAACGGGTCCTCCAAGAAGACTGGCAACCCGAGCAACTGCCCGAGCGTGAAGTTGAACTCACAGAGATTCGGAACGCTCTCGCCCCAGCAACGAGGGGCGTCAATGCGCACAACCTCTTTCTCT # Questionable array : NO Score: 2.75 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CACCCCACCATGTCCGCATAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA //