Array 1 191082-190662 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABUHG010000002.1 Gardnerella vaginalis strain UMB0202 SC_contig000002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================ ================== 191081 36 100.0 28 .................................... AAAAACTTCGCTAGCATCTTTACCACGT 191017 36 100.0 28 .................................... GGAAACCATTAATCATGTCAGTAAAACG 190953 36 100.0 28 .................................... GGAAACCATTAATCATGTCAGTAAAACG 190889 36 100.0 28 .................................... GTATATATGACCGGGGTTTTTTTCAACT 190825 36 100.0 28 .................................... ACTTAAAGGCTTAAAAGCTGCATGGGAC 190761 36 100.0 28 .................................... TGATGTCGTGACACTTTTTGCATAAAGC 190697 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================ ================== 7 36 100.0 28 CAATTATATCAAGAATGGTAGAAGCTAATTTTCAAC # Left flank : TAATGGTTCTGGACATACAATTCCTAGCGCCTTATCTGATTTAGCTCAATCATATGGTATTTATGTGGAAAAAGACATGGAAGAATTTCAAGTACCACAATTTGTAAGGAGTGAATTATGAAAGTCGATGAGGACAGTGGTGGCATGTGGTGTTTAGTAATGTTTGATTTACCAGTGAAAACAAAAGTAGAGCGTCACGCTGCAACTGTATTTCGCAATATGCTGCTTGATATGGGGTATGCAATGGTACAATTTTCTGTGTATGTCCGTTATAGCCCCACTCAAACAGGAAATAGAACTTCAGTAAAAATAATTAAGGATAATCTTCCTCCACGTGGATCTATACGCATTTTACATGTCAGTGATCATCAATGGTCATCTGCACAACGTTATTACAATGCAAGGCAAGAAAAGAAAGAGGAGACTCCCGATATTGCTATGCTTTTTTAATCATAAAATGTCTTATAATGGTTGGAATTCTACCATTCTTGATGATATAC # Right flank : GAATAAATAAAAACGGGGAAGCTGGAAAGCTTCCCCTGCAGTGATAATCATCAAAACTGCTGAGCAATCAAACTGGATAACGAGTCCAGCCTTATTGAAAATTAGCACTTCTAATATATCATTTTTAAGAAATAAAAAACAAGTGGACTTTTTTAAGTTTTGTTAAAAGATTTGAAAAGTTAACATATCGATATATTCAATGAATGACGCAGTTGGAAATATTACTATTATTATGTTTAACATATATGCGTTTTTTTAAAAAGTGCATTCCTAGAATGCATGTATGTACATAGACAGCATCCATATATTCATAATGGGAACGTTACTAATGTAGCATTCCCATTATGTTTTTTATAATATGCGACTTATTTGCAACTTACCAAATGTGTACGCGCTCGCTTGGGTCGAGCCACATCTCGTCGCCGTCTTTAACGTCGAAAGCATCGTAGAACAAGTCAACGTTGCGTGCAATGCCATTAGTGCGGCACTCTGCAGGGGAG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAATTATATCAAGAATGGTAGAAGCTAATTTTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [58.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 1 1078365-1079612 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABUHG010000001.1 Gardnerella vaginalis strain UMB0202 SC_contig000001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1078365 28 96.4 33 ..............C............. CGAAATCCATTGATGATTGGTGATGACGTTTAT 1078426 28 96.4 33 ..............C............. TTGTTCAGCTTTCATGTCGCGCTGATGTTTAAA 1078487 28 96.4 33 ..............C............. TTATGCAGAACATTTAATGACGCAAACCACAGA 1078548 28 100.0 33 ............................ TCAACGACACCGTAGAAACAAACCGCCAGCACG 1078609 28 100.0 33 ............................ TTGTTCAGCTTTCATATCACGTTGATGCTTAAA 1078670 28 100.0 33 ............................ CTTTTTTGTTTGGTCGCCTTGAATAATAAAAGG 1078731 28 100.0 33 ............................ CGAAATAAAAACAATTTTTGAAAATGGTGTAAC 1078792 28 100.0 33 ............................ TACAATTCCATATATTTTGCCATTCCGTTTGTA 1078853 28 100.0 33 ............................ CTATAAGCGTCTTCATTCCAAGGCGAATCTTGG 1078914 28 100.0 33 ............................ TTGGCAAGGTACAATCAACACGTCAATCGTACC 1078975 28 100.0 33 ............................ CCACCCTTTTGAATATGCAAAACTTGATTAAGG 1079036 28 100.0 33 ............................ CTGGAGGGCGCGCAGCATTGCTAGTACAGCCAG 1079097 28 100.0 33 ............................ TTGCGTACCCGACCTCGCGAAGCGCATTTTTAG 1079158 28 100.0 33 ............................ CAGAGCACTCCGCAAGCAATCCGCCGTCTGGCT 1079219 28 100.0 33 ............................ CGCAAGAACGACAGTCGGAAACAACCGCGTTAA 1079280 28 96.4 33 ..............C............. CTTGTATTCTCAATCAGAGAATACTTTGAGTAT 1079341 28 96.4 33 ..............C............. CGAAGCCTGCGAAGTGTTCCTGCTGGAATGTTT 1079402 28 92.9 33 ..............C........A.... CGTATCATACTTTCTGAGTTTTGTCCTTATTGG 1079463 28 100.0 33 ............................ TCTTGCTCACGTAGGGCTTTTATTCCTTTCACT 1079524 28 96.4 33 ..............C............. TCAGTGTCACCACCCGTAGGTTTCACCTTATCA 1079585 28 96.4 0 ..............C............. | ========== ====== ====== ====== ============================ ================================= ================== 21 28 98.5 33 GTATTTCCCGCATAGGCGGGGGTGATCC # Left flank : TTTATTCCTAATGAAATTATTGAGCTAACTGGTATTACATCCAACATGCTTGAATCTTATGGTGTCGGATTAGATTTAGCATTAAGAGAATTTATTGATTTTGTGGGAAAATTACCATTATTAGGATATAACGTATCGTTTGATATTGGATTTTTTAATTCGGCTTTATTCTCATTAGATGAGAAACTCAGCAGTGCTTTTTCTGTTAATAAAGTTATTGATATTTCACGTTTTGTGAAGCATGATAGGAGGTTTTTGAAAAATTATCAGTTGAAGACTGTTCTGCATGAGTATAACATTTCTGAGTCAGTTCCTCATAGAGCTCTCCTGGATGCTAGGCTAACGGCGCGTCTTGTTCTTAATTTGACAGAATTGTTAAAGTTTCTTTCATAAGGTTATAATTTTGAAGGATTGTGTGCAACAATGGGTTAATTTTGAAAAGTAAATAGTTTTTACTATTTAGTCTTGGAAAAATAGCTATTTTATTGGGATTTTTAAGT # Right flank : CTAAGCACCCTAAAAACGCGGCGGGTATAACCACGTCTTTTCCGCATACGCTGGATAAAACCTACATGTGCGGCAAGTGTGGTTGTAGTAGTCTAGTGGTGGATATGATAGCGGACGCACAAGTGGAGGTTAAAACGCTACGCGGCGTATTATATCGCGCGCGTTGATTGTTTTTATAATAGGGTAGGCAAATAAAAACTTGCCTACCCCTTATTTTTACTGTTGATTGTTTGACTCTGCTTTAGCTGCTTTACTAACCGCCTCTTGCAGCGCTTGCCATGATGACGGCAGCTCTACAGGGCGATGTGGGCGGCGCGCAGCCCAATCACGTATAATGTCATAATCCCACGCAGGCTTTGCTGTTAGCGCACCAACTGAGTGCGTTGGTAGTGGGATCAGACCGCGGAGGCTACTCGCATCTTGACCATCTAAGGCTGCACGCCTAGATCGCACCAAATACTGGCGCATAGACTCGTAGCCGACGCCAAGAAGACGCGCAA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTTCCCGCATAGGCGGGGGTGATCC # Alternate repeat : GTATTTCCCGCATACGCGGGGGTGATCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.80,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA //